Array 1 1097-17 **** Predicted by CRISPRDetect 2.4 *** >NZ_WFIY01000003.1 Acidianus infernus strain DSM 3191 contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================== ================== 1096 24 100.0 35 ........................ CTAGTTGCGATAGCCTGATAGAAATTGAAACCGTC 1037 24 100.0 35 ........................ TAGTAAGCCATACCTTCAAAAACTTCAGGGGTTCT 978 24 100.0 34 ........................ GCATCTCTATCAAACGCTCTATCGATATGATCGA 920 24 100.0 35 ........................ TTATATTCTTCATACTGGCTTTCTGTCGTTTTTGT 861 24 100.0 35 ........................ AATACTGCCTCCTGCCCCTTAAACGGGGTAATTAA 802 24 100.0 34 ........................ TGAAAATCTTTCAATATTTCGAATTGTTCATCGT 744 24 100.0 34 ........................ AATTGAATCTTCAAAGTTTTCTTTTCTTTGTCGT 686 24 100.0 37 ........................ CACTGTCCAACTCAATATACTCAGTCACTGGTCCGCC 625 24 100.0 36 ........................ ACTCTCAGTAGACCGTATGTATAGAAGTGTTTGTCA 565 24 100.0 36 ........................ TAAACGGCTTCTAGGTAATAGAATAACGCCTCACAT 505 24 100.0 34 ........................ TCGGCTACAGTTACGATATCCGCCTCACCGTAAA 447 24 100.0 33 ........................ TCTACCGTCATTGCGGAATGACTTATATACCAA 390 24 100.0 34 ........................ ATAATAATAGTAAGAATTGACGGGCTTATGCTCG 332 24 100.0 33 ........................ TTGGTCCATCATGCCTTGATCGAACCCAGTAAG 275 24 100.0 35 ........................ ATGTACATCACATCATCACCCCAGCGCTTGATGAC 216 24 100.0 36 ........................ TTCCATAAACCGTGTGAGGAATGTCGGTCTTAGTAT 156 24 100.0 34 ........................ ACATCTGAATTCGGGCAATAATATTTAGACTCAG 98 24 100.0 34 ........................ CCAATTTGTTGTGTCGCAACTGCTAAAAATCTTA 40 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ===================================== ================== 19 24 100.0 35 GTTGAAATAAGGAAGAACTGAAAG # Left flank : TGTGAAGAACTCTTAATCCTCCTATTTCTCTATCTACTTTGAGTATTTTCTCTCTTTCAATTCACTCTAGAAATTAGGAGAGTTAGGAATTAACTTCTCATTCTTGAGATTATTCCTAAACTCCTTCCTTTCTTTCAATTAGTATGTTGATAAAAGGCGGATACGTTATTCCCCCCTTGTCTACAATTTCTCTATCTACTTTGAGTATTTACCCTCTTTCAATTTAACCTAGAAAGTAGGGAAGTTTGCAATAATCTCTTTTTTCAGATAATTGTTCATGTAGATTCTTACGTAAATTCACTCACGTCTTTTACGAGGTTTAAATACACTTTAAAAACTTTTGCGTTGAAAACTTACTTTCAAAAAATCGAGAGATAAACTTTTTCTACTTTGCCTCCCATCAATTTTAGTGAAAAGTAAAGTTTTTATCTTAAAATGAAGTAGTTTAATCTACACAGAACGCAAAAAGAACGTGAAAAAGCAGTGAAAATCAACGCACG # Right flank : GAGTTGTGGTTGTTGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATAAGGAAGAACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 5605-7800 **** Predicted by CRISPRDetect 2.4 *** >NZ_WFIY01000003.1 Acidianus infernus strain DSM 3191 contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================== ================== 5605 24 100.0 34 ........................ ATAAGCCTAAACGTATTGAGCCTGGTGCGTCTAA 5663 24 100.0 35 ........................ GGGATACCCCTGTGGGATAATGGTATACCTTATAC 5722 24 100.0 34 ........................ ATAGTGACGGATTCGTTAACCACCAACATTCCTA 5780 24 100.0 36 ........................ CTCCGAGGAAAGAAGATAACAAGAAGACTGAAATTA 5840 24 100.0 35 ........................ TTCTGGGCATTCAAAAACCTCAACAATATCCAAAA 5899 24 100.0 36 ........................ GGGTGTATTCAAAAAAGACAAAAAGGCTCCAGGCAA 5959 24 100.0 36 ........................ CTGGCATCACCACTGTCATTCGCTGTAACAGCACAA 6019 24 100.0 37 ........................ GTTCCTTCTTTCTCTTCTAATAATATCAATGTGTCTG 6080 24 95.8 34 ...........A............ TATTTTTACCACGCCCCAGATGTCTTGAATAATT 6138 24 95.8 37 ...........A............ TACTCCTGCTCATCTTTGAACCTTAACACTTCCACGT 6199 24 95.8 35 ...........A............ ATTTTTCCTCCTCGTTATAGACCTCTAGAAAGTCT 6258 24 95.8 35 ...........A............ TTATTATCCCACCTGTAACACGCTTGATAAGGTCT 6317 24 95.8 34 ...........A............ AAATTTCTCAACTTTTGCTTTTGGGACTGTCTCT 6375 24 95.8 35 ...........A............ GTGCAGGGACCTGTCGCCCATGCATAAACTTGTGA 6434 24 95.8 34 ...........A............ TGTTTACTTGAGTCCCCGCAAACACTACCCTGGA 6492 24 95.8 34 ...........A............ TTGTAGTAAACGCTGTACCCTCTCTTCCTCAGTT 6550 24 95.8 34 ...........A............ TTGGTTTTTTGGTATCACAATTTTTACTTGTTTC 6608 24 95.8 34 ...........A............ GAGGAACCAGTTTGACTTTGAGCAGGATATAAAA 6666 24 95.8 34 ...........A............ TAATTTCCGAGAATGATCTTGCCCCTATCCAAGA 6724 24 95.8 35 ...........A............ TGAGGTATGCCCTGGGCGTGGTATTTTGCAATTAG 6783 24 95.8 34 ...........A............ TCATACTCTTCGTAATTTGAAATTGTTTCAACCA 6841 24 100.0 34 ........................ AGTTGCAAAATCAGCACCATACACTGTGACACGA 6899 24 100.0 34 ........................ GCTCATTATCTTTTGTACTGTCGTAGTATTATTC 6957 24 100.0 34 ........................ GTATTTGTACATCAACACTTTTGACGACCTTAAG 7015 24 100.0 35 ........................ ACGTTCTTTCTAATGTTCAGTTCTAGCCGTGACGA 7074 24 100.0 36 ........................ TCCGGACAGATTTCAACAAATTCAACTAAATCGCAA 7134 24 100.0 35 ........................ CAGATTCGGTCATGCCAATTCTCGGTCCATTCCTC 7193 24 100.0 33 ........................ CTGTGCCTAACATGTGAATATCTATTGTATTCC 7250 24 100.0 35 ........................ CTTCTTGGCAAGGTATGAGTTAACGGAGTTCTGAC 7309 24 100.0 35 ........................ GTATCCGGACTGTAACCTTGCAGATTATACCCTTT 7368 24 100.0 34 ........................ ATTGAAACCTCATGCTCTTCTCCCTGATAATACT 7426 24 100.0 34 ........................ ATGAGCAAGTTTCGGCAGTGTTAACGCAATACGG 7484 24 100.0 34 ........................ CTAGTCCACTCTGTGTTATACCTAATTCTCTGGC 7542 24 100.0 35 ........................ AGGTTTTTGAATATGTTGGTAACGTTTTTTAATAT 7601 24 100.0 34 ........................ TTCTCTGCAGTAAAAATATAAACTTGGGTTTCGC 7659 24 95.8 34 C....................... ATTCTTCTAATCCATTGTAGATCAATTCTATCTT 7717 24 100.0 36 ........................ CCATCTGTTATCTCAGCAAGTCTTAGAGAACAATAT 7777 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ===================================== ================== 38 24 98.5 35 GTTGAAATAAGGAAGAACTGAAAG # Left flank : TCATCAATTTCTCTATCTACCTTGACTCTTTTTACTAAATTACTTTCTTTCAATTTCACCTAGAAAGTAGGGGAGTTAGGAATTATTTATTTGTTAGCGACACTTTAAGATTATTCCTAAAATCCCTTAATTCTTTCAATTAAACGTGAAGATAAAAATGATAGACGTTCTTTCACCTTCTCTAGAATTTCTCTATCTACTTTGATTGTTTATCCCCTTTCAATTTCATCTAAAAACAAGTGGATTTGAAAATGTTCGTAATCTGGGAAATTTTTTCAGGTAGATTCTTACGTAAATTCACTCACGTCTTTTACGAGGTTTAAATACACTTTAAAAACTTTTGCGTTGAAAACTTACTTTCAAAAAATCGAGAGATAAACTTTTTCTACTTTGCCTCCCATCAATTTTAGTGAAAAGTAAAGTTTTTATCTTAAAATGAAGTAGTTTAATCTACACAGAACGCAAAAAGAACGTGAAAAAGCAGTGAAAATCAACGCACG # Right flank : GCAGGACCCGGGCAAATCGCCCCAGGGACTACTCTATGGGCATATGTAACCAATCTTAATATAACATCTTATTACAACTATGCTAAGGCACAGGTAATAAATGGTTGGGCATCTCAATATAGTAGATGGGAATACTTATATCAGTTCTGTTATCCATATATCAATGTAGAAACAACTGGTCTATAAGGAAAAAGTTTTTTTATTTTTTATCTTCTTTATTCTCATGGAATCTAATTCATCTATAACAAACTTACCTACTTACCCTACTTACTTTAACGTCACTAACATTAGTTGTATTAAGCCTGGATATCCCCTCATATTATCACAAAATCCCCCATCAACGCCATGGTATATCCAATATTTACCGGAGCTTATTTTGATTGCAGGAATTGCTTCAACTGTGTTAACTTTCTACTTCTCACCGGGATTAAGAGGCGCTGTAAAAAGGTTATTTTTAAGGAAGTAATCCACTTTAGGGTTTTTTAACTCTCTTTCTTTTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATAAGGAAGAACTGAAAG # Alternate repeat : GTTGAAATAAGAAAGAACTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 3 11232-12899 **** Predicted by CRISPRDetect 2.4 *** >NZ_WFIY01000003.1 Acidianus infernus strain DSM 3191 contig_2, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================== ================== 11232 24 100.0 35 ........................ GAATAGCGTCGGTACTGAACATGATATTCATGGAT 11291 24 100.0 34 ........................ ATGAGACAATATGTATTATACATATATTATATAT 11349 24 95.8 35 ....T................... CCAAAATTTCGTACACGTCGTTATCAACGTAAACA 11408 24 95.8 35 ....T................... CTATTCGAGACTTATAAGGTGGGGCTTCAGTTGTT 11467 24 100.0 37 ........................ TAAGCTTTGCATATAGTATATAATATAGGGGAGACTA 11528 24 100.0 34 ........................ TAATAACAGGTTCTCCACTATGTCAACAAGTCTG 11586 24 100.0 34 ........................ AATCTGATAGGAATGGCGGTACGAAAACATGCGA 11644 24 100.0 34 ........................ CTGTCCACAGTCAGAGGAATTACAAAAGGCAGAT 11702 24 100.0 35 ........................ ACATGAGGCGTTTATATGCAGATATAAAATCAATT 11761 24 100.0 35 ........................ TACGATCCAGCTATCGAAAGCCCCCTATTAGTCAA 11820 24 100.0 35 ........................ ACTAGAAAAGGTAATCGGAGAAATGGCGGAGACTT 11879 24 100.0 34 ........................ TTTCCTTTCCAGTTAGGTAAAACATAGTATCTTT 11937 24 100.0 35 ........................ CTATCCTTCTGAGCGTTGTGCCCACTTTGCCAAAA 11996 24 100.0 34 ........................ ATGAATCCCTATGAAAAGTTGAGGAGAATTACAG 12054 24 100.0 33 ........................ CGTATTTTTACGTGTTCCTAAGCAAAAAAGGAT 12111 24 100.0 35 ........................ ACGGCATACGAATTCGCCAAGCTTCCCATTTACTT 12170 24 100.0 34 ........................ ATGCAGTAACTAACATAATCCTAGGGTCGCCTAA 12228 24 100.0 36 ........................ AAAGCCAGTGGAATGAGCGCCAGGTAAAAATTTGAG 12288 24 100.0 34 ........................ TGAAGGGGCATCTGGTCCCCTTGGATGAGTGTGA 12346 24 100.0 33 ........................ TCGATTGGTTTACAAGGCATTACTCAGTACTAT 12404 24 100.0 34 ........................ GGATTGATTTTTTGGATGCAGAAGGGTGGTATTA 12462 24 100.0 34 ........................ TTGAGGTTACGGACTACACAATAGAATACTGGAA 12520 24 100.0 36 ........................ TATTCTGTTGAAGCAATGCTACATAGTGTTCGGCAG 12580 24 100.0 36 ........................ AAATATTGATATTGGGGTGTTCACTATTGGATCTGA 12640 24 100.0 35 ........................ ACTTCCCACAAGTAAATCGAAGCTATTTCCGCTAA 12699 24 100.0 35 ........................ ACGGAAATTTTTGCAACTCTTTGAATGTCTCTGCG 12758 24 100.0 35 ........................ TTATTTTTCTCATTTCTATGGCGTTTTATGCGTAA 12817 24 100.0 35 ........................ ACTTGATTCGCCGAATTCACTCAGACTAGGGCTAA 12876 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ===================================== ================== 29 24 99.7 35 CTTTCAGTTCTTCCTTATTTCAAC # Left flank : CCGACACAAGTTTTGAAAAAACTCCTTTACCTTCCTCAATAAACTCTTTGTCTATGATGACTTAATAGAGTATTTCTTCGTCCAATCGTAGTACTATAGCCCCAGTCCATTCCTTTCTATAAAATACGTTTCGAACGTTCTTCTTTCGTTAAATAATGAAAATTTAAAAATCAACATTAACTCCATCATTTACTTCAAAAGTCCTAGCATTTCCTTCTACTCCTTGTTTTTACCATTTAACCGCATAATCTTATCCTAGCTGGCATTGAGTGACACTATTAGAAAGCCCGCAAATTTGCATATTCACACTTTCACCGTGATGACTTTCTAATCGTCATTAAACGTAATATTGTAAGACAAGATCACACGTGCATGAAGTTCATAAAATCTTTCTCTGAAGTCTCCAACGAGGTTTACTGCTTATACCTAGTGTTTTACACGTAACATCGTTTACATAGCATTCTTTTACATCCTTTCCATCATCTAAAGTCATTTCTCCA # Right flank : CCGTGCGTCGATTTTCACGGCTTTTTCACGTTCTTTTTACGTTCTGTGTAGATTAATTTGCGTGAATCTAAGATAAAAACTTTACTTTTCACAAAAAGTGAGGAAATGCAAAGTAGAAAAAGTTTATCTCTCGATTTTTTGAAAGTAAGTTTTCAACACAAAAGTTTTTAAAGGGTATTTAAACCCCGGGAAAAGACGTGAGTGAATTTACGTAAGAATCTACATGAAAAAATTTCCCAAATTATGAACATTTTCAAATTCCCTTGTTTTTAGAAGAAATTGAAAGGGGATAAATACTCAAAGTAGATAGAAAAATACATCACCTCACAAACCTACATGAAAAAATATCAATTATAGTAAAAATATTATATAAAACCATTTGGTTTAATATTTTCTATATCATGCTTAGAAAACGTTTTCAATTGGAGAACAGGTTTTTGCATAACGGTTACTAGAATTAGATAGTCAGAATTACTGAACGTTTAGGACTTTATTCATTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAGTTCTTCCTTATTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 4 16822-16962 **** Predicted by CRISPRDetect 2.4 *** >NZ_WFIY01000003.1 Acidianus infernus strain DSM 3191 contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =================================== ================== 16822 24 100.0 35 ........................ AGGCAATTCATTCATTCCACCCTTCTTATGTAATA 16881 24 100.0 34 ........................ TTCCGTATGGGACTGGGTATGTGTGGAAGTACTA 16939 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =================================== ================== 3 24 100.0 35 GTTGAAATAAGGAAGAACTGAAAG # Left flank : TTTTGAAAAGCTTAATGAAACTTTGAAATCTTAATTTCACGTAGGTAGTAAGTTTGTTAAGGACTATATTATCATTAGATGTATCTATAAGAGTTTTGTAATACAATTAATATAAGGGAGTAAATAGTTTTATATAATATTTTTACTATAATTGATATTTTTCATGTAGGTTTGTGAGGTGATGTATTTTTCTATCTACTTTGAGTATTTATCCCCTTTCAATTTCTTCTAAAAACAAGGGAATTTGAAAATGTTCATAATTTGGGAAATTTTTTCATGTAGATTCTTACGTAAATTCACTCACGTCTTTTCCCGGGGTTTAAATACCCTTTAAAAACTTTTGTGTTGAAAACTTACTTTCAAAAAATCGAGAGATAAACTTTTTCTACTTTGCATTTCCTCACTTTTTGTGAAAAGTAAAGTTTTTATCTTAGATTCACGCAAATTAATCTACACAGAACGCAAAAAGAACGTGAAAAAGCCGTGAAAATCGACGCACG # Right flank : GCCTAAACTTCCATGTTCCCCATTCCTCCACG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATAAGGAAGAACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 197-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_WFIY01000004.1 Acidianus infernus strain DSM 3191 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================= ================== 196 25 100.0 33 ......................... CCATCAATTCACCCAGACAGTACTAAGGACAAC 138 25 100.0 32 ......................... GTTTTTTTAATGTACAAACAAGAATTAAAGCA 81 25 100.0 33 ......................... CAACTTTTGCAAAATTCTCCCGGCTTCTTGTCT 23 23 88.0 0 T......................-- | ========== ====== ====== ====== ========================= ================================= ================== 4 25 97.0 33 AGTTGAAATAAGGAAGAACTGAAAG # Left flank : CAAATGAATAAAGTCCTAAACGTTCAGTAATTCTGACTATCTAATTGTAGTAACAGTTATGCAAAAACCTGTTCTCCAACTGAAAACGTTTTCTAAGCATGATATAGAAAATATTAAACCAAATAGTTTTATGTAATATTTTTACTATAATTGATATTTTTTCATGTAGGTTTGTGAGGTGATGTATTTTTCTATCTACTTTGATTATTTATCCCCTTTCAATTTAACCTAGAAAGTAGGGAAGTTTGTAATAATCTCTTTTTTCAGATAATTGTTCATGTAGATTCTTACGTAAATTCGCTCACGTCTTTTCCCGGGGTTTAAATACCCTTTAAAAACTTTTGTGTTGAAAACTTACTTTCAAAAAATCGAGAGATAGAGTTTTTCTACTTTGCATTTCCTCAATTTTAGTGAAAAGTAAAGTTTTTATCTTAGATTCACGTAAATTAATCTACACAGAACGTAAAAAGAACGTGAAAAAGACGTGAAAATCAACGCAC # Right flank : A # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTGAAATAAGGAAGAACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 4061-6609 **** Predicted by CRISPRDetect 2.4 *** >NZ_WFIY01000004.1 Acidianus infernus strain DSM 3191 contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================= ================== 4061 24 100.0 39 ........................ TGGAGCGTCCCAGACGTTTTCTTCCCAGAGCTGATATCC 4124 24 100.0 34 ........................ TTCTGATTCTGAATGTGGCTTCACTATCTTTGAA 4182 24 100.0 34 ........................ CCAGCTAGACCAGTTTATGACATAGTTGAGAATG 4240 24 100.0 35 ........................ TTGTAAATTGAGAAGTAGTAATATTAAAACAAAAA 4299 24 100.0 38 ........................ ACAAGAAATACAAAGCTGAAGATCCGCAATCTGCCCCA 4361 24 100.0 38 ........................ ACAAGAAATACAAAGCTGAAGATCCGCAATCTGCCCCA 4423 24 100.0 34 ........................ AAGTGAGGCGTGAAACGCCGAACGAAGTGACTGG 4481 24 100.0 34 ........................ CCACTTGGCGCTTTTGTTTTATGCTTTGCCTTCT 4539 24 100.0 34 ........................ AACCAACCATCAGGATCAAAAAAACAAACATAAA 4597 24 100.0 35 ........................ GGGGTATACAGATGGACAAAGAAGAAGGGGATTTA 4656 24 100.0 34 ........................ TTACACGGAATAATCACAAGTGGGCTTGTGACGC 4714 24 100.0 34 ........................ ATTGGGAAGAGGAGATGCCTGGCTCTGACTTCCA 4772 24 100.0 34 ........................ ACTGTGAGCCTTGCCTTCAGATTCCTTTTTCTTA 4830 24 100.0 34 ........................ AGCCCCACCTCCTTCTTCTTAGCCTCGGTATCAG 4888 24 100.0 34 ........................ TGTGGCGATAATGGTATTACGCTTATGCCATATG 4946 24 100.0 34 ........................ CCATTATCTGTCGGTTCTAAAACGATTGTCTCTA 5004 24 100.0 34 ........................ ACTGTGAAAATTTCTGATTCACAAATTATGAAAG 5062 24 100.0 34 ........................ ACAAAGCATCTAGAACCATCACTCGCTCTACCGC 5120 24 100.0 34 ........................ GTAAGTCTGTAGTATGTGCGTTTATCCGGATATA 5178 24 100.0 34 ........................ CTTGCCAAAAAGTTTACAAAATTTTCCAGAGCAG 5236 24 100.0 35 ........................ TGGTTAGGGGCAAGATCATTTTCAGAATTGAAAGA 5295 24 100.0 35 ........................ ATACAGTATTTCTTTAGCTTCTTATGTTGTTCTTT 5354 24 100.0 35 ........................ GTAGGACTCGAGAAGGGGCTTTACACTTATAACAA 5413 24 100.0 37 ........................ AATCATTTCGGCTAACTCAAAATCGTCCAATTTTTTA 5474 24 100.0 34 ........................ AAACCTTTTTGGCTTAAATACTGCTCAAACATGA 5532 24 100.0 37 ........................ CCAGACCTTTGTTTTTTAGGCTCCTGACGAGTCCTCT 5593 24 100.0 33 ........................ TTCGTGATTCCTCATAATGCCACGGGGGTGAAA 5650 24 100.0 36 ........................ ACAGCTGACGCTTTATCATTAATACTTGGTGTAAAG 5710 24 100.0 34 ........................ ATAATGAAGTTGAAGTGGATCTTGAAGAAGAGAA 5768 24 100.0 34 ........................ TCCACAATTAGGCTAACATGGAAACCCATGTAGT 5826 24 100.0 34 ........................ TAAGTAGTTATGTTTATGTCATAATTATTCGACT 5884 24 100.0 34 ........................ TTTGATGTTTTTATTTATAAACGTTTCTCTGTAA 5942 24 100.0 35 ........................ TTGATATCGGATTGCCGGCATAAATAATTGGTAAA 6001 24 100.0 34 ........................ ATTTTTTAAACATAGGCTTTTCTTCTTCCTGATT 6059 24 100.0 34 ........................ CTAAGCGACGCGTTGTTGGTGTTGCTCATCGTGT 6117 24 100.0 35 ........................ ATATGCAAAGTATTACCAATTACAAGGTATTACCA 6176 24 100.0 35 ........................ GTTGCAGACACTCTACTTTACGCACTGGCTTACGT 6235 24 100.0 35 ........................ TGTTGTCCACAATTTCTCTTCATTAGTAACGGCTC 6294 24 100.0 34 ........................ TGAGATATTGGGGGCGTAAGCCCATAAAACTTAT 6352 24 100.0 35 ........................ CTACATCCACCTAGTATAATTTACAACAGCATCAT 6411 24 100.0 35 ........................ CTACGCTGACTTTGCGAGTGCAATGTTTAATGATG 6470 24 100.0 34 ........................ CGCTCAACAATTGAAAATATTTCAGCGTTATATT 6528 24 95.8 34 ....G................... AAACTCGATTACATATTCGTTTACTCTATATGTA 6586 24 87.5 0 ....G.............C..G.. | ========== ====== ====== ====== ======================== ======================================= ================== 44 24 99.6 35 GTTGAAATAAGGAAGAACTGAAAG # Left flank : TTTGAAAAGCTTAATGAAACTTTGAAATCTTAATTTCACGTAGGTAGTAAGTTTGTTAAGGATTATATTATCATCAGATGTATCTATAAGAGTTTTGTAATACAATTAATATAAAGGAGTAAATAGTTTTATGTAATATTTTTACTATAATTGATATTTTTTCATGTAGGTTTGTGAGGTGATGTATTTTTCTATCTACTTTGATTATTTATCCCCTTTCAATTTCATCTAAAAACAAGGGAATTTGAAAATGTTCATAATCTGGGAAATTTTTTCAGGTAGATTCTTACGTAAATTCGCTCACGTCTTTTCCCGGGGTTTAAATACCCTTTAAAAACTTTTGTGTTGAAAACTTACTTTCAAAAAATCGAGAGATAGAGTTTTTCTACTTTGCATTTCCTCAATTTTAGTGAAAAGTAAAGTTTTTATCTTAGATTCACGTAAATTAATCTACACAGAACGTAAAAAGAACGTGAAAAAGACGTGAAAATCAACGCACA # Right flank : GTAAAAAGTAGAATTTAGTTGAGGGTACGACCAGTAGACGTTAAGGTTAATAAATCGCTGTCGATGAAGGTGGTAAAAATTCCGAGGTCAAATTAATTATAGTGGATGATGACTTTGTGCGTAAGCTCTTGGAGGAACTAGAAATTACGTCAAGGAAATAAATTAGCCTTTTATAAGCAAGGATTTCCTAGATAGAAAAATCCATACCAGATGCTATAGGGCGCCATATTGAAGAACTGCTACCTAGATAGAAGGATTCACACAGATTTAAAGTGATACGATTATAGTCCAATTAAATTCTTCATTCTAGAATAAAAATAGAAACGGGTAAACTAAATCAAAGTGGGGGTTATAGGTAAGAGTCTCTTATGAAGTCATAAGACTAGACCTCGTCTGGGGCTGGAGAGTAAGGCAATGTTATTTAAGCCTCAAGGTTGCAGAAGAGGTAAATTAAAGCCCTTTCAGAGGAGTTCAATACTAATAAGCCGTGGAGGTGACAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATAAGGAAGAACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 40612-40758 **** Predicted by CRISPRDetect 2.4 *** >NZ_WFIY01000004.1 Acidianus infernus strain DSM 3191 contig_1, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 40612 26 96.2 35 ......G................... GATCTTTGATGACGCGGGTATCTGGCTTTCGAAAG 40673 26 100.0 34 .......................... TACGTGTGTATTACCGACTACCTCTACAACTCAG 40733 26 96.2 0 ........................A. | ========== ====== ====== ====== ========================== =================================== ================== 3 26 97.5 35 GTAACAACACAAAGAAACTAAAACTT # Left flank : AGTAAATCGTCGTGACTTTTATAGCAGAGAGAATCTCCATAGTAATGCCAAACAGAAGTGGGGAAAGGATGAGATATTTAGTTCCCCTTTTTAGTCTTTCCAATGCAATGAGCTCCGAGCTGTAACTCATTGTAGAGATATTTCTAGATCTTCGATATTAAAATTTTTATGACTGGACAATCTTGTGATATTGACTTCCTCCTAGAAGGGTTCCCCTCATCGATTCGAGAAGGGCAGAGACTCATTTAAATTCATAATCGCGACTACGTCAAGATCACACGAAGAAAGTGCCTATGAGTAATCTCAATCATCTTCTTACCACACTTAGGACAAGAGACTCAGGAAATACCTAGGGTTAACATACTCCACAATCAACCCATGCTTCTTGACTTACCAACCAGTACTGAATACGACGATATTAATCAAATAAAGTTTATCGTGAAATTCAGCTGACAGTTTATTAACGTTCTTAATGGGGTTCTTAAGATTCTCCAATTTTT # Right flank : TTCTATATACTAGAAAGTTACACAGACAAATATCTTTATAAGTTCTACTAACCTTCTTTTTAAATAAAATAAAAATGCTGTCCATAGTGATTCCAGCGTATAACGAAGAAAGGAGGATAGGAAATACTTTAAGTAAATTGAAATCATGGTATTCGTCGTCGGAGATTATAGTTGTATTTGACGGTAATGATAATACGCCAGAAGTTGTAAAGGAATATAACGTAAAACTTTACGTAAGCAAGGAAAGATTGGGAAAAGGAGCATCGCTAAGGAGAGGTATAGAGTTCTCGTCCTATGAGAAAATCCTGTTAATTGATGCTGATTTACCGGTAACTCGTGAAGATTTGGATAAAATAATAACAACTGACGCTGATCTGGTAATTACTAACAGAAAGATTGTGGGAATGCCTTGGAAGAGGAGGTTCCTACACAAAGGCTTCATCGTTTTGACCAAGCTCTTCTTCCCTAGTCTTAGAAAGTTTAAGGATTTCCAGTCGGGA # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAACAACACAAAGAAACTAAAACTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.08%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 4 2156505-2159691 **** Predicted by CRISPRDetect 2.4 *** >NZ_WFIY01000004.1 Acidianus infernus strain DSM 3191 contig_1, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================== ================== 2156505 24 100.0 34 ........................ ACTAATTACGGGATTTCGGTTTATCTAGCACATA 2156563 24 100.0 35 ........................ ACAAGAAGGACAAGTAATACAGTCCATAAACGAAT 2156622 24 100.0 35 ........................ AAAATTATTTGTGGACTGACCTGATGCCCCAATTC 2156681 24 100.0 35 ........................ GCATTAGTAATTGTAAGGAGAATTAGCATTGCCAA 2156740 24 100.0 35 ........................ TTGATTACAAAGTATCCGATTATGTAGTAGAATTT 2156799 24 100.0 36 ........................ ATTACGTTTTCGTTCAGACAACACTGAATACAACAG 2156859 24 100.0 35 ........................ GACAGGTCAAAATTTTTGTTTTCACAGGTAAAGGA 2156918 24 100.0 37 ........................ AGGAGTGTGATGCACTAACATTCGCAATGGAAATAAT 2156979 24 100.0 34 ........................ GACATACTACTACGTTTTCTTGTCCGAGAAAGGA 2157037 24 100.0 34 ........................ ACTATTTTTTTATCTACGTATAAACAGGGTTTAT 2157095 24 100.0 34 ........................ CGACTATGAAGTGAGCGACTATACGGTGGAGTTC 2157153 24 100.0 34 ........................ CACTAACACTGAACCCACAACCGCCCGTGGACTT 2157211 24 100.0 35 ........................ AAAGGATTCCCTGGGTATGGTTAGGATCATTGCAA 2157270 24 100.0 35 ........................ AAATATAAGGGCTTACTGGATTTCGTTAGAAATAA 2157329 24 100.0 35 ........................ TACGATTTGTACTATATTGAAAGGGTGAGTTGAAA 2157388 24 100.0 34 ........................ TCAGAAGAATTGAACCAGACAAGGCATGGTATCT 2157446 24 100.0 33 ........................ AAAATCAACAATCTCCATCAGATCAACAGACTC 2157503 24 100.0 34 ........................ TGTGGTTGTGCCTTGCATAGGGGTTGAATAGAAT 2157561 24 100.0 35 ........................ CCAGACAGCTACGTTTTCGATGGAGAAGTACCAGA 2157620 24 100.0 36 ........................ GATCCAGAACTTTAATAGCTTTGCCTGCCCCCCTAT 2157680 24 100.0 35 ........................ TATTTCTTAGCCAGGTTGCATAGGTTAGAAAAGAG 2157739 24 100.0 34 ........................ GACAGCGTAAAATGGGAAGTTTACGCCTTGACCT 2157797 24 100.0 33 ........................ ATTCCCGGCTATCTCTGATATTTTTTGGGATAA 2157854 24 100.0 34 ........................ AGACAAATGCGCTGAGGGCATGGCGACTTGGGAA 2157912 24 100.0 35 ........................ TCTTCTGCCCGCTCTGCAGGAAAAAAATAAGACCG 2157971 24 100.0 34 ........................ AAAATGAGAAATGTAAAATGGGGAGTGGGAAAAT 2158029 24 100.0 34 ........................ GGGAGGATTATAGTCTATGGTAGGTTAGCATTTA 2158087 24 100.0 35 ........................ GTATACACACAATTAAGCCAAAAAAAATCAAATAT 2158146 24 100.0 33 ........................ ATTGGTGACGATATTGAAGTAAAATGTGATCCA 2158203 24 100.0 35 ........................ TTTACAAATTTACAATTTAGGTCAGAAATGTTTAC 2158262 24 100.0 35 ........................ AAGTTCAACTGCCACGGCACAAATTGTATTGTCGG 2158321 24 100.0 36 ........................ ACATATTCATCAAATGGCATTAAGATTTTCAATTTA 2158381 24 100.0 35 ........................ ATTTATAGAAGAACTGCCAGAATCCGAAGACGAAA 2158440 24 100.0 34 ........................ ATTCGCAATTTTTACAAAATGACGCATCACCAGT 2158498 24 100.0 35 ........................ GAAACTGGAATTCTTGCGACTTTGTAACCTTCATT 2158557 24 100.0 34 ........................ TCGTATTCCTTAAAAACGAAATTATACCTCTGAT 2158615 24 100.0 34 ........................ TTTTTCTCCAGTCCGTGACCCACAATCCTCTTGC 2158673 24 100.0 34 ........................ CCAAGGATTTAGGTCTAATGATCTGGGGCGAGTA 2158731 24 100.0 37 ........................ GGAAGTACAAAAGGCAAAGGTAGTTAAATTATCCTTA 2158792 24 100.0 35 ........................ TCATTTTCGTAATGATATTTGTTTTGAAGAATCTT 2158851 24 100.0 34 ........................ TGTAATAATTGTAAAAACTTGATGGAATATTCAA 2158909 24 100.0 34 ........................ ATACGTGGACGATTATCAAAGAGCCAGGCGGAAT 2158967 24 100.0 35 ........................ GGATGCAATGAGAAATGTGCCAGGGACTATAACAT 2159026 24 100.0 36 ........................ TTTACTTCCTCGTAGAACTTCTCCTCATTTTTCTTT 2159086 24 100.0 34 ........................ ATATTTGATTACTTGTGGATCGATAGCAAGTTAG 2159144 24 100.0 34 ........................ TTGTCCAAATGCAATTTTCAATTCCTGTCGATAA 2159202 24 100.0 35 ........................ TGGTTTTGGTGCGTTTATCAACAAACGATAAATAG 2159261 24 100.0 34 ........................ TATCATTATTAACTGTCTTAACAAGTTTATCTAC 2159319 24 100.0 34 ........................ TGGTGAGAAAAAATGTTGTACCTATTAAATTCTT 2159377 24 100.0 34 ........................ CTTACCGATATTAATATCTTATTTTCTCCGGACA 2159435 24 100.0 34 ........................ AAAATGGCAGAAGGAAACCAAATTAAAACCTTTA 2159493 24 100.0 34 ........................ ATGGCTGTAAAATGGGAATGGTAGCGATTGGCTA 2159551 24 100.0 35 ........................ AGGTTACTGACTATACCATTGAATACTGGAACGAT 2159610 24 100.0 34 ........................ AGCAAATTGCTAATGATGGAAGCAATGAGCCCAA 2159668 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ===================================== ================== 55 24 100.0 35 CTTTCAGTTCTTCCTTATTTCAAC # Left flank : TCCCTTATATCCACACTATTTTGAAGATCCACGTTAGTTTGCTTCGTATAGGTCTTCCAACTTCTTCACGTTTTTATCCAAACTGTCCTTTGTAAGTTATGTTACCGTCAGCCTTATCGCTATCGTTCAATTTTAACTCTATTTGCCTCTCACTCTAACTATGACTTTATGTTAATCATACTCATAACGTCTTGAGTCATTATCTGCAGCTTAACTTCGTTTATCAACTTATGGAGTTCCCTCAATATCACTTCATCTCGTCTAAAAACAAACCAACAAGTTCTGAAGGTCTTCCAAAAACTCTAAGTCCAGATCCTTGTTGTACTCCATATAATACAACCTTTCCGCATAGCCGTAAACTCTATCCCACGCCTTCCTTTAGCACATGTGCCTTAACCAGTTCGGGAATTTTTCACGAAGCCAATATAGCCTATTTCCCCTTTGTGGTCATAAAGAAAGTTGAAAGCGTTAGACCTAACCCTTCAACGGCTAATGAGTTA # Right flank : CCGTGCGTTGATTTTCACGGCTTTTTCACGTTCTTTTTGCGTTCTGTGTAGATTAAACTACTTCATTTTAAGATAAAAACTTTACTTTTCACTAAAATTGATGGAAGGTAGAGTAGAAAAACTCTATCTCTCGATTTTTTGAAAGTAAGTTTTCAACACAAAAGTTTTTAAAGGGTATTTAAACCCCGGTAAAAGACGTAAGCGAATTTACGTAAGAATCTACATGAAAAAATTTCCCAGATTATGAACATTTTCAAATCCCCTTGTTTTTAGAAGAAATTGAAAGAGGGTAAATACTCAAAGTAGATAGAAAAATTCTAGAGAAGGTGAAAGAACGTCCACCATTTTTATCTTCACGCTTAATTGAAAGAATTAAGGGATTTTAGGAATAATCTTAAAGTGTCGCTAACAAATAAATAATTCCTAACTCCCCTACTTTCTAGGTGAAATTGAAAGAAAGTCATTTAGTAAAAAGAGTCAAGGTAGATAGAGAAATTGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAGTTCTTCCTTATTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 5 2164471-2168648 **** Predicted by CRISPRDetect 2.4 *** >NZ_WFIY01000004.1 Acidianus infernus strain DSM 3191 contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================================== ================== 2164471 24 100.0 33 ........................ TTATCGCTCCGCCGGAAGCCCCTGCACTCCCGC 2164528 24 100.0 33 ........................ TCTTGTACGTGAGTCCCATTAAAATGAGAATGA 2164585 24 100.0 35 ........................ ACAAGCGTATCCGTACGTTGGTCCTCCGTTATATG 2164644 24 100.0 35 ........................ TGACATATAATGCAAACGAAATTAGAGCGAAAATA 2164703 24 100.0 34 ........................ CCTCAGTAAGTTTGTTATCGGGCGTGCCATTACT 2164761 24 100.0 34 ........................ CAAAGGCAAAGGAAATAAACATAGAGCAAGCGAA 2164819 24 100.0 35 ........................ CAAAGTGCCGAGAATGCAAGATCGTCAACGCCGAA 2164878 24 100.0 34 ........................ AGATGAGGGCTCAGTTCATAAAACGTTTGATAAG 2164936 24 100.0 33 ........................ CGTTATCATTCTATTATGCTCAGTAAAGAAAAA 2164993 24 100.0 35 ........................ GGCACTGTTTGGCGAGTCTAGCAATAAAGACTTTA 2165052 24 100.0 35 ........................ TTCTTCTAATCTAAACGTATGCAAACCAAACCAAA 2165111 24 100.0 34 ........................ GTTCTCCTACAACGGACCTATCTCTAACGTTAGC 2165169 24 100.0 34 ........................ CTGCTACCTCTTCGTCATAATCATCTGCTTGATA 2165227 24 100.0 37 ........................ CTGTTGTCCAAAATCAAGACTATCTGTGATCTTGCCT 2165288 24 100.0 36 ........................ CTGAAAATAGCAAAAATCGTTGCAGATAGTTATGAA 2165348 24 100.0 34 ........................ TAAACAGCGTCAAGATAGTAAAACAGAGATTCGC 2165406 24 100.0 34 ........................ ACTTGATCAGAACACAAAAATATTCGAATTCTAA 2165464 24 100.0 34 ........................ GCGATAAATAAAGAAAAAGGAATAATACTGGATA 2165522 24 100.0 34 ........................ ACCTATGTATCGGAACCGTTCATAGAACAAGGGC 2165580 24 100.0 30 ........................ TAAAGTATAAATTGCCACTCCAATATCTCT 2165634 24 100.0 35 ........................ ATATTTCTTTGCCTGCGCAAACTGTTTAACCAAGT 2165693 24 100.0 34 ........................ TTTGTTTTATTTATTGAAGGTCTCATTACTCTTC 2165751 24 100.0 34 ........................ AGTGCCAGGCTCAAGGACTCAAGCAACGCTTATA 2165809 24 100.0 33 ........................ ACGCCACTAGGTCTTATATAAACGTCAAAATCA 2165866 24 100.0 34 ........................ ACAACCGCTAAAAATCCATCTAGTGCTATTTCTT 2165924 24 100.0 33 ........................ TAAAAATAGATGAAAATGGAGAAATAAAAACAA 2165981 24 100.0 34 ........................ AAATATAAACCATAAATCGTCAACAATTAAGCTA 2166039 24 100.0 35 ........................ CCAGAGTAAGAATGTGCTATGTCGCAAAATTATCC 2166098 24 100.0 35 ........................ TAAAATGGGAGGAAATAGAGGAAGTTGAGTATAGA 2166157 24 100.0 34 ........................ CTAAAGAAAGATGAAGGTAATCAAACATAAATCA 2166215 24 100.0 34 ........................ ATTCTCGGTCCATTCCTCTGAGGAACGACGTCGG 2166273 24 100.0 34 ........................ AAAAAGCCGTTATTTGGTTTGTGGGGGCTATCTT 2166331 24 100.0 38 ........................ ACAGGATTGGTATTGGGCACACAGGGGGCTCTATACTT 2166393 24 100.0 34 ........................ TATCTTCCCTCTTCGCATCTCTCCATGAACATTT 2166451 24 100.0 34 ........................ CGCAGAGTTCTACTTGCCAGACGACGTGGCATTA 2166509 24 100.0 35 ........................ CTTGAAGGTCTAACATTTACATATGTTGCAGATGA 2166568 24 100.0 35 ........................ GAAATTACAAAGAAATGGACATTTTTAGCAATATC 2166627 24 100.0 34 ........................ CGCCTTCCTGTCTGCCTCTTACGACAACATATCC 2166685 24 100.0 37 ........................ TAGCCTGATTGAATTTGGCGAATCTAATAGTAGGCTT 2166746 24 100.0 35 ........................ TTCAGATCTCTTTTGTCAAGAGCATTATCGAATTT 2166805 24 100.0 34 ........................ TCATACTCGGAATAGTGAGACTCTGTTTCTTTAA 2166863 24 100.0 36 ........................ CATTAGGGTTTAAAATATGTTAGACAAATATTTTCA 2166923 24 100.0 43 ........................ AGGTCATCAACTACGCATCAACGAACATATTAGCCCCTTACCA 2166990 24 100.0 34 ........................ GGCAGAATTTGTGGCAGAAGCAATAAGGGAAAAA 2167048 24 100.0 35 ........................ ATTCAGTATCACAAAGAATCAAAAATTATTTTTTA 2167107 24 100.0 36 ........................ CTCTGATAATGTATCAATTGCTATGTTTGAATTTCT 2167167 24 100.0 36 ........................ CAATTCCTGATATAAACAAAGTGGCAGAGATAACAA 2167227 24 100.0 34 ........................ GTGTGGTATGAGCAAACATTCACTGAAGATGAGA 2167285 24 100.0 34 ........................ GAAACGATCTTAAACAACTCATCCAAATTATCTT 2167343 24 100.0 34 ........................ CGAATGAAACCGCAAATTAATTCATTTTTTCTCA 2167401 24 100.0 35 ........................ ACACACGCCAATATATCATCCACCCGACGAAGTGG 2167460 24 100.0 35 ........................ CTTTCAGCGATTACGGGAACAACAGTCGTCCCATT 2167519 24 100.0 34 ........................ CTGATAGTCCTTTGTCGTAACAATAGTCACTATA 2167577 24 100.0 35 ........................ TTCTACTATTACATGGATCTTATCGACAACCTCAC 2167636 24 95.8 34 ...A.................... CTATTCCTTCTGGTTCACCATATGGTGTACGTCT 2167694 24 100.0 34 ........................ ACAATTGCACGAATAAAATATTTTAAATTCGGTA 2167752 24 100.0 33 ........................ CTTCTTCACTCATTTTTCTCGCCAAGAATAATT 2167809 24 100.0 34 ........................ CTTTTTGTCTGTTCCGACGGTATATATTTGTAGA 2167867 24 100.0 34 ........................ GAACCTGCCGACAGACCAGACATCTTAGGGAAAT 2167925 24 100.0 34 ........................ TCCAGGAGAGACTGCCTAGTGAGGAGGAGGTCAG 2167983 24 100.0 34 ........................ AGCGCACAAACTCGCTTTGTGATATGCCTAATTG 2168041 24 100.0 34 ........................ TCGTAACCGTATATCCTTCCTACGAAATATAACA 2168099 24 100.0 34 ........................ TCATACTTCTCATAAGGAATGTTGAAATCCTTGA 2168157 24 100.0 35 ........................ TTGGTAGGGGTGGGAGAAGATGACTAACGAAGAAA 2168216 24 100.0 34 ........................ AGGTTATTGTTCCTGGTGTGTTTAAATAGCATGT 2168274 24 100.0 34 ........................ GCAAAATATGAAGGGGAATTTATAAACGCATATA 2168332 24 100.0 33 ........................ AACTATCCTTACATCCTCTAATACCTCACCGCC 2168389 24 100.0 36 ........................ TTTCTTAGGTAGGTAATCTTTGCAATTCCGAAATCA 2168449 24 100.0 36 ........................ CTACAAAAGATTTTTAGAGAGTTTCGAATAATGCGT 2168509 24 100.0 33 ........................ CTCAATATTGTGTAGTAGAATAAATTATAATTG 2168566 24 95.8 35 ..........A............. CTTTGTCTGATATGAAGAAATTTTGGAGTTTTTGT 2168625 24 95.8 0 ..............A......... | ========== ====== ====== ====== ======================== =========================================== ================== 72 24 99.8 35 GTTGAAATAAGGAAGAACTGAAAG # Left flank : GTGAAGAACTCTTAATCCTCCCATTTCTCTATCTACTTTGAGTATTTATCCCCTTTCAATTCACTCTAGAAATTAGGAGAGTTAGGAATTAACTTCTCACTCTTGAGATTATTCCTAAACTCCTTCCTTTCTTTCAATTAGTATGTTGATAAAAGGCGAATACGTTATTCCCCCCTTGTCTACAATTTCTCTATCTACTTTGAGTATTTACCCTCTTTCAATTTAACCTAGAAAGTAGGGAAGTTTGTAATAATCTCTTTTTTCAGATAATTGTTCATGTAGATTCTTACGTAAATTCACTCACGTCTTTTACCGGGGTTTAAATACACTTTAAAAACTTTTGTGTTGAAAAATTTCTTTCAAAAAATCGAGAGATAAAGTTTTTCTACTTTGCCTTCCCTCAATTTTAGTGAAAAGTAAAGTTTTTATCTTAAAATGACGTAGCTTAATCTACACAGAACGCAAAAAGAACGTGAAAAAGCCGTGAAAATCAACGCACG # Right flank : GGTCACCTTAACCAAACTCTCTGTATTTCTTTAACTCGGTCAAAATCCTTATCTTCACTTATTATTTTACTAATTGAGTTATTTAACATTACGGCGACGTGAAATGAGTCAGAAGGCTTTAGGTCGTATTTTAACATTATGTCCTTTGCCTTCTCATAATCTTCCTTTCTTATAGGAAGGATAAGGGAGTTAGGTAAGACAATCTCGTCTAGAAAGCTTATCGTATCGTTAAAGTTCACGTTATACTTCTTCTTTGAAATATAAATCACCTCATCTATAACTAATGGGTCTAAAGCTAGTCGATCTTCTTGTAATATTTTAATATAAAAATTTTCCACTTCCTTAACACCCAAATTCAAATATATGAGAAAGTTTGCGTCAAGAAAAATCATCGAATTCCTCCTCAAGGCTTGAATGAGCCAAGTCTCCTAATTTAGCGCTTTTCGCATAAGATGATATTTTAGCGTAATGCCCCTCGAGTCTTTTTAAAATCTCGTTTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATAAGGAAGAACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 6 2174756-2179005 **** Predicted by CRISPRDetect 2.4 *** >NZ_WFIY01000004.1 Acidianus infernus strain DSM 3191 contig_1, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ====================================== ================== 2174756 24 100.0 35 ........................ TTCGCTCTTTTCCACGCTTTTTTACGTGGTTTTAG 2174815 24 100.0 35 ........................ AAGCTCTTCTAAGCAAAAGTGCCCGGCATCCAAGC 2174874 24 100.0 34 ........................ CAACCGTGGGAATACGTCTATAAATTACTACTGC 2174932 24 100.0 34 ........................ CGGCTTGAGACAAACTGGGCACCATGGAATTCCG 2174990 24 100.0 35 ........................ CTTCTTTTCCTTCTGGATCACTACGTTCTCGTTAT 2175049 24 100.0 36 ........................ GTAAAGCTATCATCGGAAAAGATCATAAACACATAC 2175109 24 100.0 35 ........................ TCTCAAACGTATACACAAAGGGTTTCCCTACTGCC 2175168 24 100.0 35 ........................ AGAGTAGTGACCTTCAAGTTGGAGGAATATCTACT 2175227 24 100.0 36 ........................ ACTGTTACCATGTGCAGTATTGTTGCACCAACCTGA 2175287 24 100.0 34 ........................ AAATCAAATAGTCCCAAGGTAAAATACTTGTAAC 2175345 24 100.0 34 ........................ AAGTTTCAAATTTTAAAGAATGCATTTCATTTTT 2175403 24 100.0 34 ........................ GCCCCTGGAGATGAAGGTATCGCAATAGTTCTAA 2175461 24 100.0 34 ........................ CCTATGCCACACCCTTCCATGAACCCGCTCTTGT 2175519 24 100.0 34 ........................ GTGCCGGTAACTGATGGGCTAGAGCCTGTGGTTA 2175577 24 100.0 38 ........................ TGGGAAAAATGATATATAAGCTTTTTTGTAATACTCTA 2175639 24 100.0 36 ........................ TTTAACGGATGTGCCGACAGTTAGAGACATATACGG 2175699 24 100.0 36 ........................ GTAGTCTACAAGATGGATGATGATAACGAAATTATG 2175759 24 100.0 35 ........................ CGGTATACAACACAAGTGTGTTGGCAAAGGCAGTG 2175818 24 100.0 34 ........................ AATTGTCTGTGAACTTAGTTATTGCCCCAATTTG 2175876 24 100.0 36 ........................ GTGTGTATCTTCTTACACATCCGCCTGTGCGAAAAG 2175936 24 100.0 35 ........................ TTCCTCAAGTCTTGTTTGTGATGTTACGTAGTCTG 2175995 24 100.0 34 ........................ CTGATGCATATAAGGAATACTTGATGCGCAATAA 2176053 24 100.0 35 ........................ GAGAGTCTTGTCGGGATCGACTTATTCGACTCAAA 2176112 24 100.0 36 ........................ AAGAGGAGTTGTTTATAGAAAATGGCTAAGGTATGG 2176172 24 100.0 34 ........................ AGGAGGGTATGGTGAGATTTGTTGGTGTTACAAA 2176230 24 100.0 36 ........................ GACAATAATTTTGTTTTCATATTCTTTTGTTTTTTT 2176290 24 100.0 35 ........................ GCCCTAGTTCTGTATTTGAACATGATAGAGAAAGA 2176349 24 100.0 35 ........................ TAAGCCTTGAAGAAGGAGGCCGTGGCTATGCGCAC 2176408 24 100.0 34 ........................ TTGTTTTAGAAGATCTTGGACATACGGATGTTGT 2176466 24 100.0 34 ........................ AAGAAGTAATGGTCAGATTCGAAAAAGAGTTAAT 2176524 24 100.0 35 ........................ GACAAGAAGGTGCCGTATCCAACTTTCGATTTAGT 2176583 24 100.0 34 ........................ AGAAATTCTCTATAAGTCTGTTTATATTTTGAAT 2176641 24 100.0 34 ........................ CATAATTGATAGCGGAGTCGCACTTGATGTGGCA 2176699 24 100.0 35 ........................ CCTTCTTCTTCTTTTCAGATCTAGCTAAGTAATCT 2176758 24 100.0 35 ........................ TCACCAGATGACCTGGCGCTCTTTTTGAGGGAGAA 2176817 24 100.0 34 ........................ GGGATTCGTAAATTGCAACTTGTTGCTTTAAAAG 2176875 24 100.0 34 ........................ AGATCATGTTTAATCTTCAACAAATCGTAGCAAG 2176933 24 100.0 35 ........................ CCGATTATCAGCTACGTTAATTGGATAACAACATC 2176992 24 100.0 35 ........................ TGGCGTGGCGCATGCGAAAGGAATCGTGGAGATTG 2177051 24 100.0 33 ........................ AATTCAGTGCGCCTAAAATTAAGGGCATTTTAG 2177108 24 100.0 35 ........................ ATCGTAAATGAGGTAAAGTTCTTCAGCTTTTTTTC 2177167 24 100.0 35 ........................ TACTAGGGGCAACATTAGTGCTGTTAAAAATAATA 2177226 24 100.0 36 ........................ TTGAGATAAGCAGAAAAGAGGCAATCGATGTGGCTA 2177286 24 100.0 35 ........................ TATGCCCTCAGCCTATTTCTTAGCGCCACGTCGTC 2177345 24 100.0 35 ........................ CCTGGCGGGGGACTTGGCGGGGTGTGAAGCGTTGG 2177404 24 100.0 35 ........................ AAAACTCTTAAATGAAGCGTCAAAAAATCCAACAG 2177463 24 100.0 37 ........................ TCGCATTGTTTATACAGACTATTTGCCCGCTCAGATG 2177524 24 100.0 35 ........................ TTTAAAGAACTACAAAAATTCCCGCCAGAAATCTT 2177583 24 100.0 34 ........................ AGAAGAAGCTAAGGGAATTGTATAACATTATTTT 2177641 24 100.0 35 ........................ GCATATTTTCACAAACATTATTGGTTAATTGCTAA 2177700 24 100.0 34 ........................ TGCCGAATGGGAATCTTTGTCTTTCCAACAACAA 2177758 24 100.0 35 ........................ TGTCATCTGGAAGCTCATTCGCTCACCCGTTAATA 2177817 24 100.0 35 ........................ ACAAATATACGCCTTTCTCTAGTAAAATTGGGTCA 2177876 24 100.0 34 ........................ AACATTCCCCAAAGATTATGTGAGAATAGGAACA 2177934 24 100.0 34 ........................ CTGGGCGTTTACTATTGGGACGGTAAGCCTGAAA 2177992 24 100.0 34 ........................ CTATGATAGAAATCACAGATTTTCCACTGCCAGT 2178050 24 100.0 35 ........................ TTATTAATTTTTTGCATTTCTCCAGCAAAATATGA 2178109 24 100.0 36 ........................ TGAACCCCTTCAAGTGGGGGCGATAATTCTTTTTCG 2178169 24 100.0 35 ........................ GTGTGGCAGTTCGTTTGCCATGCACCACCTATCTG 2178228 24 100.0 34 ........................ GATCTAAATGCTCTACTAATTCGTGAAATTCTTG 2178286 24 100.0 34 ........................ AGATACCAATCACGGTAATAACGTGTTTGAATGT 2178344 24 100.0 34 ........................ GAATTGAGAAAAGAAATAGACGAAGCATGCGAGA 2178402 24 100.0 34 ........................ TTGAATTCATCTAGAGATGCCACGATAAATTATT 2178460 24 100.0 34 ........................ TGTACAACAGAATGGCATTTATGATGACTTCAAG 2178518 24 100.0 34 ........................ ATAATATGGTGATAAGAAAAATGGTTCAATTGAA 2178576 24 100.0 34 ........................ CAGAGACTGTTGTCATTCCGCCGTAAATCATTGA 2178634 24 100.0 34 ........................ TCCATTTCTCATTGCGTATGGCTTTCGAATCCGG 2178692 24 100.0 34 ........................ ACGATTGGGCTGACGAAATTAGACCATTTTGCAG 2178750 24 100.0 34 ........................ TAGATGGGGGCTTCAAGATTGCTAACGAATATAG 2178808 24 100.0 34 ........................ ATAAATATAGGCAAATTGAATTAAGGCAAGTTAG 2178866 24 100.0 34 ........................ ATAAATTGTCTTGGCGGGATCTTGTATATCTTCC 2178924 24 100.0 34 ........................ CGAAATAATAAGAGAAAACAGCGTAAGGATCAGG 2178982 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ====================================== ================== 73 24 100.0 35 CTTTCAGTTCTTCCTTATTTCAAC # Left flank : AGTTTAGGATTGACGACCTTCTTAAGCCCCGACACAAGTTTTGAAAAACTCCTTTACCTTCCTCAATAAACTCTTTGTCTATGATGACGTAATAGAGTATTTCTTCGTCCAATCGTAGTACTATAGCCCCAGTCCATTCCTTTCTATAAAATACGTTTCGAACGTTCTTCTTTCGTTAAATAATGAAAATTTAAAATATCAACCTTGCATTTCCTTCTACTCCTTGTTTTTACCATTTAACCGCATAATCTTATCCTAGCTGGCATTGCGTGACACTATTAGAAAGCCCGCAAATTTGCATATTCACACTTTCACCGTGATGACTTTCTAATCGTCATTAAACGTAATATTGTAAGACAAGATCACACGTGCACGAAGTTCATAAAATCTTTCTCTGAAGTCTCCAACGAGGTTTACTGCTTATACCTAGTGTTTTACACGTAACATCGTTTACATGGCATTCTTTTACGTCCTTTCCATCATCTAAAGTCATTTCTCCA # Right flank : CCGTGCGTCGATTTTCACGTTCTTTTTGCGTTCTGTGTAGATTAAACTACTTCATTTTAAGATAAAAACTTTACTTTTCACTAAAATTGATGGAAGGTAGAGTAGAAAAAGTTTATCTCTCGATTTTTTGAAAGAAATTTTTCAACACAAAAGTTTTTAAAGGGTATTTAAACCCCGGTAAAAGACGTGAGTGGATTTACGTAAGAATCTACATGAAAAAATTTCCCAGATTACGAATATTTTCAAATCCCCTTGTTTTTAGAAGAAATTGAAAGAGGGTAAATACTCAAAGTAGATAGAAAAATTCTAGAGAAGGTGAAAGAACGTCCACCATTTTTATCTTCACGCTTAATTGAAAGAATTAAGGGATTTTAGGAATAATCTTAAAGTGTCGCTAACAAACAAATAATTCCTAACTCCCCTACTTTCTAGGTGAAATTGAAAGAAAGTCATTTAGTAAAAAGAGTCAAGGTAGATAGAGAAATTGATGAACTCAAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAGTTCTTCCTTATTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 7 2179521-2179659 **** Predicted by CRISPRDetect 2.4 *** >NZ_WFIY01000004.1 Acidianus infernus strain DSM 3191 contig_1, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =================================== ================== 2179521 23 100.0 35 ....................... AAAATCCTCCTGATTCTTCAATGCCAATACTTGAG 2179579 23 100.0 35 ....................... TCTTCTGAATAGCCCAGATAATTTAGCGCAACGAG 2179637 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= =================================== ================== 3 23 100.0 36 TCTAAGTAATGCATATTTTTCAT # Left flank : ACGTTCTTTTTGCGTTCTGTGTAGATTAAACTACTTCATTTTAAGATAAAAACTTTACTTTTCACTAAAATTGATGGAAGGTAGAGTAGAAAAAGTTTATCTCTCGATTTTTTGAAAGAAATTTTTCAACACAAAAGTTTTTAAAGGGTATTTAAACCCCGGTAAAAGACGTGAGTGGATTTACGTAAGAATCTACATGAAAAAATTTCCCAGATTACGAATATTTTCAAATCCCCTTGTTTTTAGAAGAAATTGAAAGAGGGTAAATACTCAAAGTAGATAGAAAAATTCTAGAGAAGGTGAAAGAACGTCCACCATTTTTATCTTCACGCTTAATTGAAAGAATTAAGGGATTTTAGGAATAATCTTAAAGTGTCGCTAACAAACAAATAATTCCTAACTCCCCTACTTTCTAGGTGAAATTGAAAGAAAGTCATTTAGTAAAAAGAGTCAAGGTAGATAGAGAAATTGATGAACTCAAAAATCTACCTGAAAAAATC # Right flank : TTCTTCTAGTTAATTCGTTTTAAAACATGTTTTACCCATTCTTCTTGACTACGGAAAGAGTCACTCAGCGGAGGAGACAGGTAGAATAAACTCCGCAGCTAGTACGAAAGGCTACTAGTCCTCCCTTAAGGCTAAGGCTTAGGCAACTCGCTTTTTCTCCTTCACGTCTGTCTCCTGTTATTATTTAATGTTCACCAGTTACACCCTAACAGTTAAGATGAAATACGAAACAATAATAATTGCCCTTCTAACCGAGAAATAGGAGGTTGTTATTATGCATCAAGACTAGGCGTAACAAAGTTCTTAGAATCTAGAAGAAAACGTAACAACACAAAGAAACTAAAACAGCGATAATTTGATTGGCTTGCTTTTGATAAGTATGTAACAACACAAAGAAACTAAAACACAAGAAATGGGCGGGCGAAAGATGGGTTTTACTGTTTGTAACAACACAAAGAAACTAAAACATGAGTAAGCTTTAAATAAGTAGTACGCATAAA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTAAGTAATGCATATTTTTCAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.26%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 8 2179981-2180185 **** Predicted by CRISPRDetect 2.4 *** >NZ_WFIY01000004.1 Acidianus infernus strain DSM 3191 contig_1, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ===================================== ================== 2179981 25 100.0 34 ......................... GCGATAATTTGATTGGCTTGCTTTTGATAAGTAT 2180040 25 100.0 37 ......................... CAAGAAATGGGCGGGCGAAAGATGGGTTTTACTGTTT 2180102 25 100.0 34 ......................... TGAGTAAGCTTTAAATAAGTAGTACGCATAAATA 2180161 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ===================================== ================== 4 25 100.0 38 GTAACAACACAAAGAAACTAAAACA # Left flank : TAGAGAAATTGATGAACTCAAAAATCTACCTGAAAAAATCTCTAAGTAATGCATATTTTTCATAAAATCCTCCTGATTCTTCAATGCCAATACTTGAGTCTAAGTAATGCATATTTTTCATTCTTCTGAATAGCCCAGATAATTTAGCGCAACGAGTCTAAGTAATGCATATTTTTCATTCTTCTAGTTAATTCGTTTTAAAACATGTTTTACCCATTCTTCTTGACTACGGAAAGAGTCACTCAGCGGAGGAGACAGGTAGAATAAACTCCGCAGCTAGTACGAAAGGCTACTAGTCCTCCCTTAAGGCTAAGGCTTAGGCAACTCGCTTTTTCTCCTTCACGTCTGTCTCCTGTTATTATTTAATGTTCACCAGTTACACCCTAACAGTTAAGATGAAATACGAAACAATAATAATTGCCCTTCTAACCGAGAAATAGGAGGTTGTTATTATGCATCAAGACTAGGCGTAACAAAGTTCTTAGAATCTAGAAGAAAAC # Right flank : AAGTGATAAGCAATGATTTATGACATTCTTCTGTTTATGGGAATGCAATTTGACGATCTTTTTAGCACACTACTAGGGTTCAAAACAAAGAAAGTGAAGGAGCTCAACCCGCTACTCCCTAACGATCCGCTTTTACTGTCTCAGGTCAAAATAGGTATCGCGTTTCTAGTTCTCCTTATAATTCTACTGACAATTTGCCCATTCTCCAAGTCTTTCGCGCAGGATCTTTTCATGTTCGATTCGATATTGGAGGCTATTGTGACACTCAATAATACTTTAGTTATAGCGAAAGTGAAACACAATCTTTAGGAGTAACAACACAAAGAAACTAAAACAGCGTTTTACAAAGTTTATGTGAAAGGGATAACACTGTTAAGCCATAACATTATCAAATAAGCTAAAACATAAACGCTTCTAGACTATATTTTAATTTTGTGGAAATTTATACATCCTTCTTACGCTTTGCATAAACTAGTACTCTCAATTCCATAGACCAATTA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAACAACACAAAGAAACTAAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //