Array 1 1060742-1062234 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAESGZ010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain D6-10116 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1060742 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 1060803 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 1060864 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 1060925 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 1060986 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 1061047 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 1061108 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 1061169 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 1061230 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 1061291 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 1061352 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 1061413 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 1061474 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 1061535 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 1061596 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 1061657 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 1061719 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 1061780 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 1061841 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 1061902 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 1061963 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 1062024 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 1062085 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 1062146 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 1062207 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1078366-1080269 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAESGZ010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain D6-10116 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1078366 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 1078427 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 1078488 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 1078549 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 1078610 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 1078671 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 1078732 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 1078794 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 1078855 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 1078916 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 1078977 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1079038 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1079099 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1079160 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1079221 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1079282 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 1079343 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 1079404 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 1079465 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 1079526 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 1079588 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 1079691 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 1079752 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 1079813 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 1079874 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 1079935 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 1079996 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 1080057 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1080118 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1080179 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1080240 29 96.6 0 A............................ | A [1080266] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //