Array 1 2075-39 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCJC01000003.1 Moraxella catarrhalis strain K117 NODE_3_length_177180_cov_31.202713, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2074 28 100.0 32 ............................ TTTGTCTGTTAAGCTTTGATTAAGTGTGTTAA 2014 28 100.0 32 ............................ CAAACGGTGGGGTCTCATACCTCATCAATCCG 1954 28 100.0 32 ............................ AGTCGTCGAAGCGTGGCTTGTCGCTGTCGGTA 1894 28 100.0 32 ............................ AATTGCCAATCTTGGCACAATTGAAAGCAACA 1834 28 100.0 6 ............................ TGATTT Deletion [1801] 1800 28 92.9 0 ..........................CT - Deletion [1773] 1772 26 92.9 33 --.......................... TGATAAGATATCAAGCACTTTATCAGCGTCTGC 1713 28 100.0 32 ............................ TTGCTAAGCCGATGCCTGATACAATGCCGCCA 1653 28 100.0 32 ............................ TGCCCCTGCAGCGATTAGCCCAGCATTGCCTA 1593 28 100.0 33 ............................ CGCAAAATCAGACACGCCATTATTACTTGCTAA 1532 28 100.0 32 ............................ CATAAAGTATCATCACATTCACTTGAAATTGA 1472 28 100.0 32 ............................ AGTTGTTTATTATTGATGGCTTTGGTATAGGG 1412 28 100.0 32 ............................ AATGTTGGTTTTTTGAGTGCGTTTTTCGCCGT 1352 28 100.0 32 ............................ ACGACGGTCGAACAGGTATTCGCTGCGTGAAA 1292 28 96.4 32 ..............G............. GTAATCAGAAGGCGGTGGTCTGCCCCCTCCAT 1232 28 100.0 32 ............................ AATGCTGATACTACCGCCTCGGATGTTGGGGG 1172 28 100.0 32 ............................ AAGGTAATTTAAACGCAAATTCAGGCGTGTTC 1112 28 100.0 32 ............................ AATGGGGTGAAACATTACTTTAGAGACAATAC 1052 28 100.0 32 ............................ TATGAGCCAATTAGACTGCTCGCTGGGCAACC 992 28 100.0 32 ............................ GCTTGGCGTTGATGGCTTTGATTTCACTAATC 932 28 100.0 32 ............................ AATTTTGCCTGCCATACGGTCAAGGGTGATTT 872 28 100.0 32 ............................ TCTCCAGTTGGCAACGAAAATCCATTTTTCTC 812 28 96.4 32 ..........A................. TTATTGGTAGGGTAAGCGAATGTACCAAGCGT 752 28 100.0 32 ............................ TACTTTAAATAATTGATTGTTCATAGTTTTAA 692 28 100.0 32 ............................ ATATTAGATGAAAAGCGATTGGCGGAGTTGGT 632 28 85.7 0 .......................CTTC. - Deletion [605] 604 23 82.1 32 -----....................... GTGCTGAATGTGAAAGCATTGCATGGTCGGCT 549 28 100.0 32 ............................ ATCTTTGCACATAGAGACCAAAACCTTATCAA 489 28 100.0 33 ............................ TTCAAAATGAGCGCCCAAAATTATTACAAGATT 428 28 100.0 32 ............................ AGCCACAACACCAAGTGCACCCCAAAGATCAT 368 28 100.0 33 ............................ AAGCTTCAACGACTGGGGTTTTTTCACTAGAAA 307 28 100.0 32 ............................ TTGTAGCTCAAAATTGGCTTTGGCGATGTCCA 247 28 100.0 32 ............................ GCCTTGGTGTTGTCAGTTTTTGAGCAGAACGA 187 28 100.0 32 ............................ TTACACGCTACTGACCTACATTTGGGTAGGAC 127 28 100.0 33 ............................ AAGCTTCAACGACTGGGGTTTTTTCACTAGAAA 66 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 36 28 98.5 30 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : ATTGTAGCTCAAAATTGGCTTTGGCGATGTCCACTTCAC # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 27772-27083 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCJC01000017.1 Moraxella catarrhalis strain K117 NODE_17_length_27809_cov_29.338709, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 27771 28 100.0 32 ............................ TTACACGCTACTGACCTACATTTGGGTAGGAC 27711 28 100.0 32 ............................ AGTTTCAAAATATCAACTTCCCCTAGTAGCTT 27651 28 100.0 32 ............................ TCATTATTATCGCCAAAACTCACCCAGTCAAA 27591 28 100.0 34 ............................ TCTCAAACCCTGCCCCGTTTAGCGTATCAATAAT 27529 28 100.0 31 ............................ AAAGGTTTGCATCCCCTTTTGATGGTTTATA 27470 28 100.0 32 ............................ AGTTATCGGGCTTGTATTCGCCATTTTCTTTA 27410 28 100.0 32 ............................ TATCGCAATTTTGTTAAAAATGTGATAACCTT 27350 28 100.0 32 ............................ TTACACGCTACTGACCTACATTTGGGTAGGAC 27290 28 100.0 32 ............................ AGTTTCAAAATATCAACTTCCCCTAGTAGCTT 27230 28 100.0 32 ............................ ATTGGGAATTATTAAGAGTTTGATCAACAGTA 27170 28 100.0 32 ............................ ATTGACTGAATTTACCGCAGTTTCAATCGTTG 27110 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 12 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TAGAAAGCCTTGGTGTTGTCAGTTTTTGAGCAGAACG # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //