Array 1 68447-67620 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQYA01000034.1 Streptococcus henryi DSM 19005 F601DRAFT_scaffold00004.4_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 68446 36 100.0 30 .................................... TAGGATTCACTTCTATCAATCCCATGGATA 68380 36 100.0 29 .................................... TTAGATACTTAGCCTCAAGCTCAAACTCA 68315 36 100.0 30 .................................... TATTATCGCAGGACGATTGACCGAGGCACG 68249 36 100.0 30 .................................... TTGAGTTTGCTATCGCTCTTCATAGCAAGT 68183 36 100.0 30 .................................... ATCACCTCCTTTATGGTGTAAAATAGGGTA 68117 36 100.0 30 .................................... TACCCATGATTAAACATTAAAGTTACCGTT 68051 36 100.0 30 .................................... TGATGTTACTGACTACAATCTCGCAGAAAT 67985 36 100.0 30 .................................... AAGACACCGCTTTGGACAAGGTCAGAGCCA 67919 36 100.0 30 .................................... TGTTCAGGTGTTAACGTTTCCAGAACTTCT 67853 36 100.0 30 .................................... AGGGATACCGCGAAGACCCTAAAAAACACT 67787 36 100.0 30 .................................... AAATACTCAGTTGTAATACCTAATACTTTT 67721 36 100.0 30 .................................... ATACAATTGATAATAATTTAGCAAATAGTT 67655 36 91.7 0 ...........................T.T....T. | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.4 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC # Left flank : TATTGAAAAATTTAGATGATTTTTTGAACTATTCATCATTTGTGACAGTTTGCCAAAAATTAGAACAGCTATGTCTTAGTTATCCAAGTTTCTATGTCATTATTTTTCCATCAAGTGAAGGTTATCTATACGCTCGAAGAGAAAATATAGAATTCATAAATATTGTCTCTGATTACATCAATCATTACTATGATTTTGATTTTTTATTTGGTCGTTTTGTAGAACAATATCCAACAAACCAGATTCCCTCAGAAGATGATTTTATACTTTCAATTCAAAAAATTAGTGGCTATTTGTTTAGTAAAGAAATAGAATATATGAGTCTTTCAACAAAAGATTTAGTAACTATAAAAATTTTGAACAATCTTTATCAGTATGATAAAAAACTAAATTATCCATTATCACAGCCAAATCCTTTAGAAATTAAGTTTTTACAAGAAAAGTCATAATTTTGTGATATAATCGAAGTAGAGTATAAAAACCAAAAATGACGATTTGAG # Right flank : ATTATAAATAAGAACATCAATCATATAAGGTAGATTTCAAATTGTCTTAACTAGACTAGGGAGAAAAAATAATGAAAATTGAGTTTTTTAAGAAAACAAAAGTAAAAACTAAGAAGAAATTCATTGTATTTGGTAGTAAATTTATCGGCGAGTTTACAGAAAAACACAGTAAATACGACATGGATGAAGAAGAAGATGTGTATGAATTTCATTCTGATGAATATGGAGGATTACTTTTTAAATTATCTGAGATAAAATCAATTGAGCTACTACGATAACAAAAGATAGTAATTATTTGACGTGTTTTCGAGTAGCAGGGACGATGTCTGTAGTTTTCCCCTGTAAAATCCATATGCTGTTCTAGTATGATAAATGTATCAGATATTTAATGGTAGACTCTGAGACAGAACAGTGTAATATAACTCTGAAAGAGACTGAAAAGATGTAAATAGCAGATAGTAGCTGAAAAAATGTTTGATTTTCGTACCTAAAATGACATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 68856-69550 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQYA01000026.1 Streptococcus henryi DSM 19005 F601DRAFT_scaffold00012.12_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 68856 32 96.9 35 .......A........................ CTCCACCCACTCAGAGTTAGTTAAACATTGCTGTA 68923 32 100.0 33 ................................ AACTAAAATATTTCCGCTTAACAAGTTGTATGT 68988 32 100.0 35 ................................ TTCTCGGTCAGCTGACGTGTTAAATAAAATAGTTT 69055 32 100.0 34 ................................ ATGGAGAAGAATACAAAGGTAAGAAATATAAAAA 69121 32 100.0 35 ................................ ATTGATGTTGATGCCATAGAACTTGATGACAAAGG 69188 32 96.9 33 ....................A........... ATAATCTGCATAATGTTTTGTTGCTGTAGCTGT 69253 32 93.8 34 .....A...........T.............. TTTTAACCAATCCATTTGGTTAACCTCCATAGAT 69319 32 93.8 35 .....A...........T.............. AACAAGGATGAGTATGACAATTTCATCAGCACTAA 69386 32 96.9 34 .....A.......................... GGGTTACACACGTATTTGAAAAATTGACCGTAGA 69452 32 96.9 35 .................T.............. TGGTCAGCAATGACGCCGATTGTGTGCCGTTGATT 69519 32 87.5 0 .....A.........A.TT............. | ========== ====== ====== ====== ================================ =================================== ================== 11 32 96.6 34 GTCGCTCCCTTCGCGGGAGCGTGGATTGAAAT # Left flank : CCAAAGCAGTCCGAGGAGATCTAGAATCTTACCCTCCATTTTTAATCTAGGAGTAATCTTATGATGGTTTTAGTGACCTATGATGTCAATACAGAAACGGCAGCAGGACGTAAGCGACTCCGTCATGTTGCAAAATTGTGTGTGGATTATGGTCAACGTGTACAAAACTCTGTTTTTGAGTGTTCGGTAACTCCAGCAGAGTTCGTTGAAATTAAGAATGAGTTGCTCACAATTATCGACCAAGAGTCTGATAGTATCCGCTTTTATCTGTTGGGAAAAAACTGGCAGAATAGGGTAGAGACAATTGGTCGAGATGATAGTTATGACCCAGATGTGGGGGTCTTGCTCCTATAATCTTATGTGCGAACCTAGGTTACACATCAAAACCTGGGTCATTCGCTCATAAAAATGAAGAATTAGTGGTGAAATAGGTCGATTATTGGGTAATAAGAGCCTGAGTAAGAGTACTTTTTTTGCCACAAACGGTGCAACTACGCGCC # Right flank : TTGCGCCAGCCGATGGAAAAGTTGAATTATCATCCGTCGCTGCACGGATGAAGTATTATACTTTTAGAAATACTGTACTAGTAATTGGTTGTCAAAGGTAATGATTTTAAATTAATAGGAGATACCTTTTTTGAATATCTAATTCATTCTTGGTTGTATTAATCAGTAAAAGTGGAGCATGTCTCGGCTTTTTACTTGACTTTATATACAGAAAGCTATATAATAAACTATACAAAAGGATATATAGAGGTGAAGTCATGGATATTGTTGAAAAAAAGGTACAGGTTAGTTTTAAGACTGATTCTGAATTATTAAAAGAAGCAAAAAAAGTTATCGCTGATAATAATCTTGATATGACAAAGGCTTATAATTTATTTTTGGAAAACATCGTTGCTAGACAAGAGATTCCTTTATTGACAGAAGAGGAACTACGTAAAGAGAAAATATTTAAGAGTCTTCAGCAGGATGTAGCTGAATCAATTGCAGAGTATCATGCAGGT # Questionable array : NO Score: 8.70 # Score Detail : 1:0, 2:3, 3:3, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCGCGGGAGCGTGGATTGAAAT # Alternate repeat : GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.00,-5.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //