Array 1 23801-24561 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386604.1 Thermocrispum agreste DSM 44070 YWYDRAFT_scaffold_1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23801 29 96.6 32 ............................C CCCGAGGACCACCGTCGGCGCCGCCCTCAAAC 23862 29 100.0 32 ............................. ATCCAGGCGGGCGAGGGCGAAGCCGTGTACGG 23923 29 100.0 32 ............................. TGCTGGACCAACAGCCGGTCGTAAGTGGTCTT 23984 29 100.0 32 ............................. ATCCAGGCGGGCGAGGGCGAAGCCGTGTACGG 24045 29 100.0 32 ............................. TGCTGGACCAACAGCCGGTCGTAAGTGGTCTT 24106 29 100.0 32 ............................. TGCACGCGCACGACTGAGTTCACCGAGCTGGA 24167 29 96.6 32 ............................C TTCCGCGTGGTCAGCTCGCGTTCCCCGATCCA 24228 29 96.6 32 ............................C CCGACTGAGCGTTGGGCGAACTACAAGACAGC 24289 29 96.6 32 ............................T GGCAGCGCTCGGGTCTGTCTTGCTCGCGATGG 24350 29 96.6 32 ............................C CTTCTCGATCAGGCTGACAGAGAACGCAGACG 24411 29 96.6 32 ............................T CCGGGTGCGCGTCCCGCAATCCTTGCCGTAAA 24472 29 100.0 32 ............................. GCTGCCGATCGGCAACACGACAAGCTGCGCCG 24533 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.4 32 GTCGTCCCCGCGCGTGCGGGGCTGATCCG # Left flank : GCTGTCGTCGGCCGTCGGCGAGGTGCAGGTGCCCGTGGAGGTCAGCGACGAGGTCATGCCCGGGGTGGTCAGCCTTCCGCACGGCTGGGGTCACGACCGGCCAGGGGTTCGCTTGTCGGTGGCGAGCAGGCACGCGGGCGCCAGCATCAACGATGTCACCGACAACAAGTGCATCGACGAGCTGACCGGAACGGCGGCGTTGTCCGGCCAGCGGGTCACCGTGCGGGCGTTGGCGGCGACTCGCTCATGAAAGGACTTGCTCCTGCAGACAGCGACGAGCGCGCGGCGGACTGTGGCTGCGTTGCTTCTCTTCGATGTTCAGCAAGGGTTGAGCATTGCCTCGCTGTGCGGAGCGGCCGGCGGCGTGCTGCGCAGCTGAGAAGGCCGTGACATCCGGCTGTCCACTGCTCTTCTGCGATCCCCCCCAGGGGCACATCCGGGGGGGCGGACAAGGGGGCAAGAAACAAGACTTCGTCGTGTATCGTTGCAGTTCAGGAAGT # Right flank : GGAGACCAAGATGAGCACCATGTTTGCCGCCCGCATCATCACCGCCGAAGCCGACATGGCCCCTGAGGTCGTCGTCACGCTCCGTGACAACGAGTCCGGGGACGAGCACCTCATCGCCACCTACCCGATCAGCGACGGCGAGGACGCCGCCGGCCTTCTGTGGGAGCACGGCTGGCGCACCCTCGACGACCCGTCGCAGGTCGGCACGAGCGTCGACGTCGGCTACGACATCACGATGGTGGAGCCCGCCGACTACGAGCAGATCGTCCAGCACGTGACTCTCGCTCGCGAGCAGGCCCGGATCGAGCACGAGCGGCAGGACACCGCGTGGCGCGCGATCATCCGCCACGCCATGCACGACAACGCCTCAGCCACCGCGCTCGCCCGGGCGGCCAGGATCTCCCGCGAGCGGATCTACCAAATCCGGGATGGCCGCCGCTGACCCGTGCCCCGGCTCTGCTGCTCTCCCCGGAGCCTGCCCAGCGGCGAGCGTCCCTTTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCGTGCGGGGCTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCGTGCGGGGCTGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 25327-25477 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386604.1 Thermocrispum agreste DSM 44070 YWYDRAFT_scaffold_1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25327 29 100.0 32 ............................. TGGAACTGCAGGTGAGGCTCCGGCGATGCCAC 25388 29 100.0 32 ............................. CTGCTCGTAGGCGTCGGCGAGCGGAACGAACT 25449 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTCGTCCCCGCGCGTGCGGGGCTGATCCC # Left flank : TCCAGCACGTGACTCTCGCTCGCGAGCAGGCCCGGATCGAGCACGAGCGGCAGGACACCGCGTGGCGCGCGATCATCCGCCACGCCATGCACGACAACGCCTCAGCCACCGCGCTCGCCCGGGCGGCCAGGATCTCCCGCGAGCGGATCTACCAAATCCGGGATGGCCGCCGCTGACCCGTGCCCCGGCTCTGCTGCTCTCCCCGGAGCCTGCCCAGCGGCGAGCGTCCCTTTTCGGCAGAGCCGGACCGGCTGCCAGCTGCTGCCCGGCCAGGCGTAGCCGGGGCGCCGCCCCGGGACCCCGGCAGGGCTCTGCCCTGCACCCGGCACCGCTTCGGAGAGGTAGGGAGGCATGGACCGGGCTGGCCCTCTCCTCGCAGCGCGCCCGGAGGGAGCCAGACCGAACCTGCCCAGTCAAGGGCTCGCTTCGCTCGGCCTCCGGCAGACCCTTGACTGGGCAGAACCGGCCTGGCTGGCTGAAGCCCGCGCCGCGAGGAGAGA # Right flank : TCCGGGCCGGTGCGCTCCCCGGAGCTGGGGCTGTCGCCCTAGCAAGGTAGACAGACAGTAGGTGAATGTGGCGCCCTCAGCTGTGCAGGCCTGATCAGGGGCAGCTAGCCGCCGCCTGGCGTTGCGGTGCTGCCTTCATCCACCTGACGCTGCCTTCGCGGCGGGAGGCACGCCCGCCATCGACAGCTGTGCTAGCTGGTTCGGTAGTACACGCAATCAGAGTTGGCGGGACTGCGATCGCCGGAGAAGCTAGCCTGCCACGAACGCCGAATGTGGGCGGTTAGTATGACGGGTTGTGCTGCGGGCGCTACTACCTAACAATCATGTTCAGATTTTGGTGACAAATTCTCGGTTGTTGCCGCACGTGGTTTCTTCTTCCGTCGGGATCGCTAGAGCGCGACAAGTGTATCGTGTCAAGTTCCGATCAGGTGAACTTGGTGAACACCCTTGGTGGCTCTTTGTATTCCTTGTGGCTTGCATGATCGCCGGGGTATGGTCCT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCGTGCGGGGCTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCGTGCGGGGCTGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 35815-34862 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386604.1 Thermocrispum agreste DSM 44070 YWYDRAFT_scaffold_1.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 35814 29 96.6 33 ............................T CCTCGGAGATGCTGCCCTTGACCTGTTTGCCCG 35752 29 96.6 32 ............................C CTCAACAACCTTAAGGCCAGCCTTCTTGAGAA 35691 29 96.6 32 ............................C GAGCTGTTCGCGGCCTACACCGCTTTCACCCA 35630 29 96.6 32 ............................T CCTGCGACGGTGGGCATTCGGCTTGCTTGCTG 35569 29 100.0 32 ............................. CGGATCGTCAAGGCGATCGCGGCGCAGTACGG 35508 29 100.0 32 ............................. GCGTCCGCCACGATGTCGGCGAAACTGATGCC 35447 29 100.0 33 ............................. TCAATCAGGTACTCAACCTGCTTGGCCATCACG 35385 29 100.0 33 ............................. CTGGATGAGCTGGTCGACCAGATCGACCAGGCG 35323 29 100.0 33 ............................. TCAATCAGGTACTCAACCTGCTTGGCCATCACG 35261 29 100.0 33 ............................. CTGGATGAGCTGGTCGACCAGATCGACCAGGCG 35199 29 100.0 32 ............................. TCCTCCGCGTTCCGGCACTTCATGCAGTGGTT 35138 29 89.7 32 ..........................GGC CACCCGGACCGCCGTGGCCGCGTCCGGTGCTT 35077 29 96.6 32 ............................T CCTACGAGGAGAGGGCGGCTATGACTGATGTG 35016 29 96.6 36 ............................C GGACGGAGCACCAGGCCAGTGACGTCTGAGCCGCTG 34951 29 100.0 32 ............................. GCCGACGCGGAGATCATCGGGCATATCCGCCC 34890 29 79.3 0 .............GT......A..GC..C | ========== ====== ====== ====== ============================= ==================================== ================== 16 29 96.8 33 GTCGTCCCCGCGCACGCGGGGCTGATCCG # Left flank : ACCGGCACCCCCGCGACCCAGAGCGTCTTCAGCACCAGGTACGGCAGCGCGCTGACGATCGCCGCATAACAGATCACCCGGCGGCCGAGACTCGGCCGCTGCACCTCGGCCGTGGCTGGCTTGGTGATCACGTCTGTCAGCCTAGAGGCGAACGATGATCAGCTGCCGGGAATTCGCCGGATTCCCCCGCATAGTCGCCGGAACGGGCGGAAGACGCCCACGCCGTGTAACTTCTCGTTGGCCGACCACTTAATCAGGATCAAACCGGAACTCCGGATCGTGGAGCCGGGGTCGTTGTCGGTGCTTGCCGGGGCCCCGACAGAGCGGATAGTCAGTTGCGGCGCCCCTCGTCCAGTGGCGTGGCTGAACGTGTGATGCGCCGCAGAGCTACGAGGAGCATCTGCGCCCCCGGCCGCGGCGTCGCGGCACGAACCGACTGAGGTGGAATCAAGTGTGCGAGAAACTGGGGTTCCGTCGTGTATCGTCGCAGCTCAGGAAGT # Right flank : GGTTTGCTCCGCCGCGAAGACCGGCTGAGCCGGGGAGCTGCCGAGCGATCGAGCTCCAGCGCTGTACACCAGCGATGCGTGGGCAGGTTCGGCGTGAGAATCTCAGCGATTCATTTCCGATAGCGGCGTCGACGTCGTCGAGCGGCGTTGCTCCATCCTTTCGCGGGAGCAGAGCTTGGTGCGTGGGGCCGGAGAATCAACTTGAGTCCGTCGTGATCTATCGGAATCCAGTCGTGACCGTGGACGACGAAGTCGTACCCCTGCTCATTGTCGGCCGTGAAGACCATGATCGCTCGCCCCGTCTTGGCCATGTCGACCACTCTTGCCCAGACGCGATCCCTTACTCGTGCGGTTATCTTGCCGATGAACACTCCTGGGGATATCTCCATCAGCCAGCGGGTGAGATGCCCCCTGAGCCCCACGGGGCACGCCGTGACCACGATGACCGTCATTCGTCGTACGCCACTCCACCTGGAACGTGGCGGCCATTCTCATCCCAC # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGCTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 352413-352622 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATYX01000006.1 Thermocrispum agreste DSM 44070 YWYDRAFT_scaffold_3.4_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 352413 28 100.0 33 ............................ TCCGCCGCAGCAGGCCCTCCAGGCCGGCAGGCG 352474 28 100.0 32 ............................ CCCGGTGGGCAGGGCCGGCTCGTGTTGCCTGC 352534 28 92.9 33 ...C............T........... CACGCCCGAGCAGCAGCACGACGACCACGTCGG 352595 28 96.4 0 ...................T........ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 97.3 33 CAGTGCTCCCTGCGTGCCACGTCGTCTC # Left flank : GCTGTGGCGGGGTCGTTGAGCCTGGTGCCGGGTTCGGTCGAGCGTGTGGGTCGCGTGGGTGCGGCTTGTAGTGGCATCGGTTGATTGCGGCTCGGGCTCGCAGTGCGGGTCTCGAGGGTGTGAGAGCCGTTGTGGCGGGGTCCCGGTGAGGCGTCTGGGTGTCGGGCCAGTGGTCTGTGGCATGCGGGTCGCGTGGAGTGCCGCTTGTCATGGCGCCGGCTCGATTGCCAGTCGGGCTTGCCACGTGGGCGGGGGTCGCAAATCGGTCTCGGGTGTCAGCGCCGCTGTGACCGGATCCAGGTGCGACGTCTCGGTAGCGGGTTCGGGCGTGTTCCACGGGTCTTGTGGGGAGCGACATGGTGCGGTGCCGGCTCGATTGGACGTCGTGCTCACATGGGCACGGAATTCGCCACACCGGTCTGGGGTGAGACCAGCCCCCGCAACGGCTCGGCGTGACGTCGTCCGGCGACAGTTCGGGTTTCCGCGCTCGCCTGATCAGC # Right flank : CGTGACCACCGCCCAGCCGATGCAACCGCTCCGGGCGTGATGTCCGTCCTTGGCGCATGAAACAGCGTTGGGGAGAGGCCGCGGTGGCGGCGGTCATGGTGTTCGTCGCCGGATGCGAGTCCGAGCCCGAGACTCTGCGGCCCGTCGCGGACAGCAGGCCGATCGGCGCAGCGGGCGCGCAGCTGGTCGCCCACGATTCCTGCGCGTCCGCCCTGAAGGCGTTCCAGCAGGCGGTGACACGGGAGCTCGAAGCGGTGGGCTGGCAGTGGTTCGGCATGTACCGTCGGGAACTCGACGTGGCGGGCACAGCCGCGGCTGCCGAACGCGGCGAGCAGTTCTCGCCGACCAATACGCACGAATCGGCCGCGGACGAGCCGGACATCGTCAAGACCGACGGCAAGCGTCTGGTCACCGTGGTGGACCACAAACTACGCGTGATCGACGTCGCCACCCGGAAGCAGACCGTCTCCGTGACGCTGAAGGGGGGCTACCCCAGCGGT # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGTGCTCCCTGCGTGCCACGTCGTCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //