Array 1 2269-2502 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJYA01000065.1 Campylobacter sp. BCW_4321 PROKKA_contig000065, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2269 36 100.0 30 .................................... TGGTAAAATTCAGATAATTTAGAGTATACA 2335 36 97.2 30 ........................G........... TGGTAAAATTCAGATAATTTAGAGCATACG 2401 36 94.4 30 ........................G....A...... TTTAGATTTTATAGGCAAAGCATTTATATT 2467 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 97.9 30 GTTTTAGCCTATTATTAATTGTTTATATGGTAAAAT # Left flank : AGGATAATATATATAAAATAAATTCTTTATTTAATCAAATTTTTACAGCACAAGATTATAAAAATTACAAATTAAATAATGATAAGACATATGCAATAGTTTTCAAAAAAAATAAAATAAATAATTTTATTTTAAATATACTAAATAAACTAGATTCAAAGTATTTCTTTTATTGGAATAGGGAATTAAAAAAGCATTCAAATCCAAAATAATGCAAACCAAAAGCCACGCCTCTTTCGGTTCAATGTTTTTTGTTGCAATTGTATTAAGCTAAGACTAAGCGTGGTTTATTTATAATTATTTCGGTTTTTTAAGTGAGATAATCAACGAGTTTGATTATCTCGTTAATTAATTCTAAGACAAGAACTAAAAACTCAATGATCTTACTCATCATGCCTCCTTCTTATAACCGAAAGAGTAGCCATACTTAATACGCTTTAATTGTAGTATTTTTAAATGAATTTTTATTATCTTGTATTGTTTTATTTTACAAAAATTTT # Right flank : TAGACTTATCTAAAAAGCCTATTTTATCAATGTTTTCACTTTCAAATAGTGTTTTTTACCCATTCAGATTCAACTATTGAAAGAACTCTTGCGGTTTTGTAAATATTATCATGCGGATTTAGTATAGTTCTCACGGCGTAATACTGTTCGTTTTTTACCTCTTCTTTTTCAACTACAACTATCGTATCAACTGATTCTTCTTGAAGTTTCAAAGGAATGTATAAAACTACTCTTTGCTTATAAGCTGCAGGAATAATCATCTTTTGAAGATTATAATTATCTTTGATGATTTTCAATTCACCATTAATAATGTGTCCTATGAACCTATCATTTAGTTTTTTCACAATTTCAGGTAATCGCTCTTTTCTCTCAAAAAGATGCAAATGATTTACCCTAAAATCCAATTTACTGTCAAAAATGATTTCATTTTTGAATGTATCATAATCGCTTAAAGATTTAGGTATTTCTAAATCATCTAAAACTCTATCTCCATTAGAACA # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCCTATTATTAATTGTTTATATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [88.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 90550-90716 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJYA01000066.1 Campylobacter sp. BCW_4321 PROKKA_contig000066, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 90550 36 88.9 29 T.............................A...TA ATAAAGCTAATGCAAAAGTTGAAAACAAA 90615 36 100.0 30 .................................... TCAAGTCTATATGTTTGGTTACTTGGAATT 90681 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 96.3 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : GACATAAAACCAGGTAGACATATCAAAATAGCCAAGGCTAATGAAAAATTCATTATCGCCTTACCAGGTTTTCCTTACTCGGCTATGGTAATGTTTAATCTTTACGCAAGAGAGATTTTAAACTCTTGGTTACTTCAGCCTAAAGACTATATTTGCAAAGCCTTCTTACAAGGAAGCTACAAGAAAAAAACACCTTATTTGGAATTTGTCGCTTGTAACATAAAGTTTGAAAATGGACGCATTTTAGCTAATCTTGAAGGTAAAAAAGAAGGCTCTAGTGCGATTATAAACAATCTTAACAATAAAGCTGCCCTTATGGTGGTGCCAAAAGAATGTGAAATGTTAGAAAATGAAAGTTTAGTGGATATTATCTTTATGCCTTAAAATTATTTAAATAATTTTATTTCGATTTTAATCAACCATAAATTTCAATAAATTTCAAATTTGCAACCTCCTTTTAGTGGAGTAATTAGCCCTAGCGGAGTTTCAATCCACTAGGG # Right flank : TAGATATTTACCAGATAATGAAAATTTCAGGGTTTTTTAATAAAAATAGCAAAAATTATGCTATAATCTCATAAGAAATTTAAAAAGGGACTAAAATAAAGAGTTTGCGGGACTCTGCGGGGTTACAATCCTCTAAAACCGCTTTTAAAATTCAAATAAATTTTGCTGGTGATATTTTTCTTGTTTTTTGTTTATTTGAATTTCTTCATTATTTGAATTTTTGTATTTAAATTCTCCATGACTATCTATATCAAAAAGCGTTAAATTAGTTTCGTTATTAACTTTTTCGTTAAAAACTATGCCACCAAGCAAAAGCTCCATTTTATCAAACTGCTTTTCAGTGATGATTAAAGCCCTTACATTTCCATAAGGTGGCAAAATCTTTTTTACATTTTCAATAGAACTTTTTGCGGAACTTAAACCCTTGCAAATACGCATATAAACGCTAAATTGCAGCATAAAATAACCTAATTTTATAAGATTGTTTCTAAATTTACTTG # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.79%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //