Array 1 88353-89845 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYJM01000005.1 Salmonella enterica strain BCW_5828 NODE_5_length_272565_cov_3.94402, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 88353 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 88414 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 88475 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 88536 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 88597 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 88658 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 88719 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 88780 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 88841 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 88902 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 88963 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 89024 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 89085 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 89146 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 89207 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 89268 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 89330 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 89391 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 89452 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 89513 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 89574 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 89635 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 89696 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 89757 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 89818 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 105977-107819 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYJM01000005.1 Salmonella enterica strain BCW_5828 NODE_5_length_272565_cov_3.94402, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 105977 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 106038 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 106099 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 106160 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 106221 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 106282 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 106343 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 106405 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 106466 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 106527 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 106588 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 106649 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 106710 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 106771 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 106832 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 106893 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 106954 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107015 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 107076 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 107138 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 107241 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 107302 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 107363 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 107424 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 107485 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 107546 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 107607 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 107668 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 107729 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 107790 29 96.6 0 A............................ | A [107816] ========== ====== ====== ====== ============================= ========================================================================== ================== 30 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //