Array 1 1037584-1037356 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048104.1 Kroppenstedtia pulmonis strain W9323 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1037583 30 100.0 38 .............................. ATCCACTATCCACCGATTAAGAAACTGTCGGAGGAAGA 1037515 30 100.0 36 .............................. CGGCATTGGACTAAAACAAGTTGAAGGGGTAGGCCT 1037449 30 100.0 34 .............................. CATTTCAACCCGTCGCCTTCCTACCATGTGGAGA 1037385 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 4 30 100.0 36 GTTTTGATCTTACCTATGAGGTATTGAAAC # Left flank : AAAGCCTCACCGCCTGGGCCGAGTTTACGGCAAAGGGGGTGAGGCGTATGGAATGGCTAAAAGGGATTGCGGCGATCATCACCGCTCTCGTAGCCGTTGCACGCTTCTTCCGGGACGGACGAGATGACCGTTCATCCAAACGGAAGAAGCAGCGTTGACCCCTAAGATTTGGGCAGAAAGTTAAAAGCCATTAACGAATTAGCGGTTCGTTAATGGCCACAGGCCCACGGTGGGGCTCCCCTAACGTCTCTCTTGTCTCTTATTATACACTGATTCCGAAAAGATATTCAACACGTTTCATGTGAGCAAAATTGTCGTCGACCCCCAATAGCGTCGTAAACCCCGAAGATCGACGACAAAATGAAAAAAGGAGATAAACGGATATAGCATAAGATAATCTAAGATATATCCCTGTTTCTCCGATCTCACCCCTATCTAAAAAACACTTGATTTGCAATATTCCCTATGGTAATTTTGGCTTAACGACGGGAACTTTTGGG # Right flank : TTAGGTGGTTGCTTTGCCTCTCGAGCGGGTTTCATCACCGTTTTGATCTTACCTATGAGAAAACAAAAAAGCCGGGCAGGGATCACTTCCCACCCGGTTTTACTGTGTGCCTGCCACTGTTTAAGAGCGTGCGGTTTATCGAGAAATCCAGGCACTTAGGACTTTGCGAGGTCGAGGGTGCTACTCGGCTGCGTTCGCTCGGTCCATGATCTCCTGGATGATCGCGGTTTTGGCATCTGCATAGTGTTGCACGTGCCGCCACACACGCCGTGCCAGACTACGCTTGGCACGGGCATAGTTGTCCCGGTCGGTATCGTTGGCCCGTAGCCAATCACGAAAGCGTAGCATTCGTTCGATCTCAGACGTGCCCGCACTGAATACGTGCAGGTTGATGTCGATATCGGGCCCCTTTAACAGACGGTGCTCGAACCACTCGGGCTCACGGATCCACAGCGTGTAACCGGCTGCCTCCAAGGTCGGGACATAGGACGGCTCGTCGG # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGATCTTACCTATGAGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-3.30,-3.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 1038356-1038192 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048104.1 Kroppenstedtia pulmonis strain W9323 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1038355 30 100.0 38 .............................. AGAGCATGACAGAAGAAATCGCGAACGAAGACGGAAAG 1038287 30 100.0 36 .............................. GATTCCCTCCTGTTCCGATATCATGATATCCCAAAA 1038221 30 80.0 0 ....................A..AAA..GA | ========== ====== ====== ====== ============================== ====================================== ================== 3 30 93.3 38 GTTTTGATCTTACCTATGAGGAATTGAAAC # Left flank : TAACACTTCATCTGTTACAGACATTCGTTTATATTCCCAAGTAATCTGTTTATCCATCGTTCAAAGCTCCCTTAGGGAAAACCTCCCCTTCCACCCCAAATATCTCTTCCTCCAGTATGGTAGGTTTTCCTATGTACTTTTCTTTTGGATCGTTTTTAATCTTATTCCAAAGACATTGCAAGGCTTGTTTAAGCTGAGAGTCTGACTTTAAATGATAATCCTTTGGAAGCCTGATTTCTCCTTTACTCCACTGGTCTAATTTAGGAAATCCATTTTTACTAAATAGAACTCTTGTTGTACATGGCTATTTTTTGTCGTCGACCCCCAATAGCGTCGTAAAGCTGGGGGATCGACGACAAAATCAAGACAGGAGATATACTTAGATAATCTAAGATACAGCAATATATAATGCTAATTCCCCTACCTTCCCCCGATCTAAAAAACACTTGATTTGCAATATTCCCTATGGTAACTTTGGCTTAACAACGGGAACTTTTGGG # Right flank : GCCGGGCAGGGATTATTCCCCACCCGGCTCTTTTCGATTTATACGAAATATTAGTCTAGTCTGCCTTATCACTACATGGTAATATATGCATAGGCAAGAGAGAACGGAAAAGCCTCACCGCCTGGGCCGAGTTTACGGCAAAGGGGGTGAGGCGTATGGAATGGCTAAAAGGGATTGCGGCGATCATCACCGCTCTCGTAGCCGTTGCACGCTTCTTCCGGGACGGACGAGATGACCGTTCATCCAAACGGAAGAAGCAGCGTTGACCCCTAAGATTTGGGCAGAAAGTTAAAAGCCATTAACGAATTAGCGGTTCGTTAATGGCCACAGGCCCACGGTGGGGCTCCCCTAACGTCTCTCTTGTCTCTTATTATACACTGATTCCGAAAAGATATTCAACACGTTTCATGTGAGCAAAATTGTCGTCGACCCCCAATAGCGTCGTAAACCCCGAAGATCGACGACAAAATGAAAAAAGGAGATAAACGGATATAGCATAA # Questionable array : NO Score: 8.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.66, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.22%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 1068637-1068207 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048104.1 Kroppenstedtia pulmonis strain W9323 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1068636 30 100.0 36 .............................. AACACTTTCCGGCGAGAGAGTTTTTCCCATGCCTTG 1068570 30 100.0 38 .............................. GTACAGAGCACGCAACTTTTCAACCAAAGTGTTTTTGT 1068502 30 100.0 38 .............................. GCGAATTCGGTTGCTGTCATCTCTTCTTTATCCCTACC 1068434 30 93.3 36 A................A............ ACGATTCACCTTTAATCCTGTACGCTCCATCTTGTA 1068368 30 96.7 36 .................A............ AAAGTTGGATCATGATGGCCACAATTACGAAAAACG 1068302 30 100.0 36 .............................. ATCGGTTTTTCTTTTCTAGGTTCAATTTGATCTTGC 1068236 30 96.7 0 .....................G........ | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 98.1 37 GTTTCGATCTTACCTATGAGGAATTGAAAC # Left flank : GGATTCCTCAATAAAAGACGGGGTAGGGAAGAATTCTGCTTCACGTAATCCTAAAATCACCGCTTGGCCTACGCAACCAGCTCCAAACCGACGAATAAACTCCTTATAATCATCTTGTATTTTAACCCCTAAAATCCCCTCAGCCTTTTCCACTTCTTCCTCGGATACTTGGCCACCAAAAGCTTCCGGAACCCTGTCACATTCTATTTGGATCATCTTTAAGACCTCATCTTTCACGGTTGTATCCCCCTCTCGTGCGATTCTCACTTTCCAATATTGGGTCCTCCATTTATTAATTTCCTAGCGCCCTATTGTCGTCGACCCCCAATAGCGTCATAAACCCCGGAGATCGACGACAACATCGAAAAGGGAGATATTCAGAGATTACACTGGATAACCCGAGGTAAAGACCGATTTTTTAAGCCTTACCCTGATTCAATAAACACTTGATTTGTCATATCCCCTATGTTAACTTTGGCTTAACGACGGGAACTTTTGGG # Right flank : AGGTATAGCCGCTAAAATCGAAGGTTCTAATCTTACCTACGAAGGCAAGCAAAAACCGGGCGGGATCTTTTCCTGCCCGGCTTTTGGTTTGTTTATTTTGCAAGGCCATCATTTTCATCACTTTACCTTATAATAAGGCTCGCCAAAATCTAAGTTTGTTACCTTATCCTCCACATACTTGGAATGGGCCCGACACTTGAAAATCCTGTAAGCACGAAACCTTTAACCATCAGTTACCGATTAACATGGATCCAAAAATATAACTTCCGATAATTGAAGCGTATCGGAAGTTAGGGTTATCTTGATGAAAGATTGTTTTTTATTAGTGCTTGTAATAGTTGATAATACTTTCCATGCTTACAGACCATCCTTGCTAACTTTAGACTCCACTACAAGGTTTATCCTGTAGTCCAAATATGAACCTTCTCCTTTCTTTCAGCAGTCTCGCATCTCCCATCATCATATTCATACGCCGATCACTTAATTTCAATTATCCCATG # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCGATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 4 1070086-1069585 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048104.1 Kroppenstedtia pulmonis strain W9323 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1070085 30 100.0 37 .............................. TCGTGCCGGTAATGTTACCGGTGATCCTGCCGGTAAA 1070018 30 100.0 37 .............................. ATTTCATAAACTCTTTGTCAGAGATCAGGAGTAGAAA 1069951 30 100.0 36 .............................. TCATATTCTTCAAGCTCATCATCGAAATAGTTCGTA 1069885 30 100.0 39 .............................. TAATATCGACCTGCTCTTGAATCGGTAGGTTTTCTGTAC 1069816 30 100.0 37 .............................. ACTGAATGGGAGATCATTTTAAAAGAATCGGGAATTC 1069749 30 96.7 38 .............A................ GCGGTGCAACCAACATGGGAAAGTCCAATTTCTTGAAC 1069681 30 96.7 37 ................C............. GAATATCAAGGCTGACACCCAGGCTATAATGGTTCCT 1069614 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ======================================= ================== 8 30 98.8 37 GTTTTGATCTTACCTATGAGGTATTGAAAC # Left flank : ATAAATACCTCTTGACAATAAAATCAGAAAGTATCTCATTCCACTTACTACAGTAACGGAAGCAACAAACCGTCACTCTTCCGGACGTGGCTTTCACTTCTTCACGAAAACTGAACCATAAAAACAAGCCTTATTCTGGTCTGCTAGTTTGCTACATGGCAAAATACTCACGGACAAAGTATTAACGAAAAAGATATATAATCAAAGCCAAGTCTACCTTAAAAGAAGAGACATATAGAATTCCTAACAGAGAATGGCAGAACATATGACCACTCATTCCAAACTAAAACGTTTGTTTCATAGAAACAAAATTGTCGTCGACCTCCAATAGCGTTATAAACCCCGGAGATCGACGACAAAATGAAAAAAGGAGGGATCCGGAGATTACACTATATAACCCGAGATAAAGACCGATTTTCCAAACTTTACCCTGATCCAATAAACACTTGATTTACCATATCTCCTATGGTAACTTTGGCTTAACGACGGGAACTTTTGGG # Right flank : AATTGCTTCTTCTACTGTGTTTTTGTTGGATTTTGAAACATGACTTCATCCAATAGCCGGATTTATTAATCCTTTTGTTTTAATCTTACCTATGAGAACACGTAAAAAAGCATCCGCTATGGATGCTTTTTCTTTATACACCTATTCACACCGAGTATCATAAAAACGACCAGACCCCACGGCGAACTCAGAGTCAAGCTCCTACACGATCCGGCACCTCCTCAAAACAAACCAACGGATACTAGAAATGTATCCCTAATGTTCGATTTAGCGCCTTCAATATATAATCTTCAAAGGAATTGGCTAAGTCATATCTACCTCCGAAATCGTGATCATATACAAAAATCATTTCACTCGGATATATAAAGCCGATTGGGTTCCCCGCTCCATCTACACCTATAACAACCATTTTAGAGTATGCTGAGGGAAGATGTTTTCTAAAATCTAAGGATTCCTCAATAAAAGACGGGGTAGGGAAGAATTCTGCTTCACGTAATCCT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGATCTTACCTATGAGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-3.30,-3.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 1702851-1703150 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048104.1 Kroppenstedtia pulmonis strain W9323 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1702851 30 100.0 37 .............................. AAGTAGCCCAATCTGCTGTACCACCTGAACCGAATTC 1702918 30 96.7 38 ....C......................... GTCACTGTCTCGATCTTTACCCTGCCAGGACGCTTTCC 1702986 30 96.7 35 ....A......................... CATCTCTCTTTCATGAGAATACCTCCTCTATATTT 1703051 30 93.3 38 .................A.A.......... CTAACTTCTTCGAGGTATACCTCTCAGTCGGTTCCCCC 1703119 30 83.3 0 ....G................A.AA....G | AC [1703142] ========== ====== ====== ====== ============================== ====================================== ================== 5 30 94.0 37 GTTTTGATCTTACCTATGAGGTATTGAAAC # Left flank : CAGATCTTTTGGTGATTCTCCTCTTTCTAGTTTTTTCTGTAACTGACTAGCTTCCTTTTTATCTCCAGGGAGCAAAACGAACCAACCATCTTTTTTCCCTTCTGAACCTGTCGCACCTAGGGTTTCCGGAATTGCTACCAGAGTAAGTAGTAATGTTAAAACCGTAATAACAACTAATCCTCAACATTATTCCGCCTCCTCCGGCAATTTTGATAACTGCATAATCTAACTATACGACACCCAGATGTAATAACCTTCTCATAAAAAGGAAATGATGGATTACATTCCCTGCAACTACTATGGAAACAAAATTGTCGTCGACCCCCAATAGCGTCGTAACCCCTGGAGATCGACGACAAAATGAAAAGATGAGATAAACGGATATAATATAAGATAATCTAAGATATATCCCTGTTTCTCCGATCTCACCCCTATCTAAAAAACACTTGATTTACAATATCCCCTATGGTAACTTTGGCTTAATGACGGGAACTTTTGGG # Right flank : GCCGGGCAGGGATCATCCCCCACCTGGCTCTTTTCGATTTATACGAAATATTAGTCTAGTCTGCCTTATCACTGTATTCATGGGCAAGAGAGAACGGAAAAGCCTCACCGCCTGGGCCGAGTTTACGGCAAAGGGGGTGAGGCGTATGGAATGGCTAAAAGGGATTGCGGCGATTATTACCGCTCTCGTAGCCGTTGCACGCTTCTTCCGGGACGGACGGGATAACCGTTCATCCAAGCGGAAGAAGCGGAGTTTGACCCTCTGACTTGGGTACTTATCATGTGAGAAAAAATATCGTTGCCTATAAAAGTCTTAGTCTAGTCCGCCAGTTGGCAACATGGAGAGATTTCAAACGTTATTTATAATACTTCACTTCTTCTTAAGTTCTTTGATCAAATACATTATACCCAATACTAAAAACACAACAGCCAATCCAGCAACTGAAAAAACAGCTAAAATAGTCAATAAAGCAGATAGATTCATTATTAATCCTCCAATCT # Questionable array : NO Score: 6.77 # Score Detail : 1:0, 2:3, 3:3, 4:0.70, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGATCTTACCTATGAGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-3.30,-3.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 6 2738071-2737599 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048104.1 Kroppenstedtia pulmonis strain W9323 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 2738070 37 100.0 39 ..................................... AGAAGTTGCCAAAGGCCGAGAAATAACACCCGGCCTTTT 2737994 37 100.0 34 ..................................... CGGAAGATTCAACGGTTCTTTAATGTTTCCTGTG 2737923 37 100.0 35 ..................................... TTAATGGTGGGGAACGGGCCACGATCCGTTCCCCA 2737851 37 89.2 35 ..A......C.C.A....................... CTTATTCACTGCTCTGTCCGGCAGGGCTGCCCTCT 2737779 37 97.3 35 .........C........................... AGTTCATAAACCGACCTCCGTTCAATTCCCCGCAT 2737707 37 97.3 35 .........C........................... GATGCGGGAAATAAGCTTCAAACCTATCAGAAGAA 2737635 37 70.3 0 .........C.....C....A..CT...AGC...GTA | ========== ====== ====== ====== ===================================== ======================================= ================== 7 37 93.4 36 GTCACAATATAAAGCACCTCGGTTAGAGGATTGAAAC # Left flank : TAGAGGATTGAAACCATAAGGACAGGGTCTCCTATATCGAAAGATTCCATGAGTCACAATACCAAGCACCTCAGTCTGAGGACTGAGTAGGAAAATCACCGGCTCCTTTGAAAAGAGGATCGGTGATTTTGTTTCCATTCTGTATCGGCACACGGTTGTTTAACAGTGGTAAGCCTTGATCAGGGGTTTCTCATTCTATATTTTTGATAAAGGATGAGAGCTTGGAGGAGGGAGGCTTTTACACAGGTGAATGGCGCTTTCGGCTAGAGAAAGAACAGCATCCCATTCTATAATGCTTGGGGATACCGTTTTCCGAACCCGACCTGCATCGGAATAGAACCAAGGGGTGTTCGGAAAACGGAAATCCCTTGAGGGTCAAGGGATACAAAGGAATCCGAGGAAATGATAGCGAGATGTAAAAGGTGAAAAAGCAGTTTTTAAAGGAGGTGTTCGGAAATGGGTGTCGAAGTAAAGGTATAGCAAGGGATACAACCCCCGCC # Right flank : GGCAAATCACCGGCTTCCTTGGAAAGGGACTGGTGATTTTGTTTCCATTCTGTTTAACGGTACACACGGTCTTTTTTATGGTGGTAATCCTGAATCACACAGGGTTCGGTGATGGGGATCAAGAAGTTGATGATTGAAGAAGAGTGGATGGTAAGGGTGGTGATCAAAGGTTCCCCATTCTATCCTTTTGATAAAGATGAGAGCTTAGAGGAGGGAGGCTTTTACACAGGAGAATGGTGCTTTCGTCTAGAGAAAGAACAACATTCTATTCTTTAATGCCTAGGGATATCGTTTTCCAAACTCCACCTGCATCGGAATAGAACCAAGGGGTGTTCGGAAAAGGGGAACCCCTTGAGGGTCAAGGGATACGAAGGAATCCGAGGAAATGATAGCGAGATGGAAAGGGTCAAAAAACGGTTTTCAAAGGAGGTGTTCGGAAATGGGCGTCGAAGTAAAGGTATAGCAAGGGATACAACCCCCGCCGTCACAATACACAGCAC # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:0, 3:3, 4:0.67, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAATATAAAGCACCTCGGTTAGAGGATTGAAAC # Alternate repeat : GTCACAATACAAAGCACCTCGGTTAGAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.20,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 7 2738742-2738482 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048104.1 Kroppenstedtia pulmonis strain W9323 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2738741 37 100.0 36 ..................................... ACGACATTGGAAACTTGCTTCATCACCTTCGAGGTT 2738668 37 100.0 38 ..................................... AAGGTTCGGGTAGTACTTCAACTGTTTGGCCCCGTCCC 2738593 37 94.6 38 ..........C....C..................... CATAAGGACAGGGTCTCCTATATCGAAAGATTCCATGA 2738518 37 78.4 0 ..........C.........A..CT.....C...GTA | ========== ====== ====== ====== ===================================== ====================================== ================== 4 37 93.2 38 GTCACAATACAAAGCACCTCGGTTAGAGGATTGAAAC # Left flank : GCAGACTTCAAAAAGATATCCGTTTTATGGAGCCCAGATCTACAGGAAAGGGGGAGGAATAAAGAATGACCCCATTTATGCTGATGTGTCTGGGAGGAATCTTTTGTTGTTGTCTCCTGTTCTATTCATTCAAAGCTTATCGTCAATCCCGAGGCAGAGAGGAAGAGAAGGGAAAATCGCAATGATGATTAATGAAAAAGAGCCCACCGACTTGGATGGGGTCTTTTTCGACTTCCTTTGATGTGACAGAAGTGAGGGTATCGTCGATCTATAAGTGTTGCTTCTGTATTTAAAAAGGAGAGCTTCCTTTTCCGAACACCACCTGCATCGGAATAAAGCCAAGGGGTGTTCGGAAAAGGGGAACCCCTTGAGAGGAAAGGGATACAAAGGAATCCGAGGAAATGATAGCGAGGTGTGAACGATCAAAAAACGATTTTCAAAGGAGGTGTTCGGAAATGGGTGTCGAAGTAAAGGTATAGCAAGGGATAACAACCCCCGCC # Right flank : GGAAAATCACCGGCTCCTTTGAAAAGAGGATCGGTGATTTTGTTTCCATTCTGTATCGGCACACGGTTGTTTAACAGTGGTAAGCCTTGATCAGGGGTTTCTCATTCTATATTTTTGATAAAGGATGAGAGCTTGGAGGAGGGAGGCTTTTACACAGGTGAATGGCGCTTTCGGCTAGAGAAAGAACAGCATCCCATTCTATAATGCTTGGGGATACCGTTTTCCGAACCCGACCTGCATCGGAATAGAACCAAGGGGTGTTCGGAAAACGGAAATCCCTTGAGGGTCAAGGGATACAAAGGAATCCGAGGAAATGATAGCGAGATGTAAAAGGTGAAAAAGCAGTTTTTAAAGGAGGTGTTCGGAAATGGGTGTCGAAGTAAAGGTATAGCAAGGGATACAACCCCCGCCGTCACAATATAAAGCACCTCGGTTAGAGGATTGAAACAGAAGTTGCCAAAGGCCGAGAAATAACACCCGGCCTTTTGTCACAATATAAA # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:0, 3:3, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAATACAAAGCACCTCGGTTAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.20,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //