Array 1 11255-13922 **** Predicted by CRISPRDetect 2.4 *** >NZ_WEKD01000046.1 Plesiomonas shigelloides strain G5879 contig46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 11255 28 100.0 32 ............................ TCGGAACCTGCCAAGTAAATAGAGCACCATGC 11315 28 100.0 32 ............................ ACTCAAGGTGAGATTGCGCGCCATTTAGACTT 11375 28 100.0 32 ............................ TCAACCATTATCATGTCTATGTGTGATATGGC 11435 28 100.0 32 ............................ ATCAGCGGAGAAACCATATCTGATATTGGCTC 11495 28 100.0 32 ............................ AAATCTCGGTTCTCTCGCATACGAAGCAAAAC 11555 28 100.0 32 ............................ TCGCTCGGGGCGATTGCGGCGGGATGTAATCA 11615 28 100.0 32 ............................ ACTTGGAACACGCTGGGTTGTTGATGTCGATT 11675 28 100.0 32 ............................ TTTTAACCAAAACATTCGAAGCCCTGCTGAAT 11735 28 100.0 32 ............................ AACTTCGCGTGGCCAAGCATCCACCTCATCAC 11795 28 100.0 32 ............................ TGCTGGCGGGACCATTTGAACCCACGGTTGAG 11855 28 100.0 32 ............................ TACCAGCTTAGATAACACTCGACCCATCATGG 11915 28 100.0 32 ............................ ACAATGCAGCCATAACATGGGTGCTCAAGCTT 11975 28 100.0 32 ............................ GCCAATCAATGCAGAGTAAATCTGACTGGACT 12035 28 100.0 32 ............................ TAAATATTTTGCTGTGGGCATAAAAAAACCCG 12095 28 100.0 32 ............................ GGTCGGCTCAGAAAGCTCAATTTCATTGATTC 12155 28 100.0 32 ............................ TAACGCCGGAAGATAAAAAACATCGGCCAGAA 12215 28 100.0 32 ............................ AGGCATTAAAGAATGGGTTGGCGAACGCCAGC 12275 28 100.0 32 ............................ ATGACTTGGGTCAGCACCCACGCCACCAGGCC 12335 28 100.0 32 ............................ TTGATGTATCTCAGAGCACCATGGCAAACCGC 12395 28 100.0 32 ............................ AAGCAGCTCACCATTGATGCCGAGCAAACGCA 12455 28 100.0 32 ............................ AGTTGCAGGCCGACTTCTTGTCGATCCCGCCG 12515 28 100.0 32 ............................ ATGCTTTCCCGAGTGCCAGCGCTGCACGATGC 12575 28 100.0 32 ............................ GGCTGTGGGGCGATCACCTGCAGTTCTCGCAG 12635 28 100.0 32 ............................ GCTTGAAAAAGTTTGTTCGCGTGGTGGATACC 12695 28 100.0 32 ............................ AATTTCGGTTACGCGTTTTGCGTTTTTCTCCG 12755 28 100.0 32 ............................ TTACAGTGAGGGAGTTAGTTGAGGTATACCAA 12815 28 100.0 32 ............................ CGGACGATCTCAGCGTGGAGCAGATTGAACAA 12875 28 100.0 32 ............................ GGCTGTTGGGCAACCCACGCGGCGGCCTCTTT 12935 28 100.0 32 ............................ AATCCGTTATCAGCCCATGTGGTGTCATCCAG 12995 28 100.0 32 ............................ TGAAAGCGTAATAGCGTTTCGGATTATTCATC 13055 28 100.0 32 ............................ TATAAAGTCTATATATATCATGCCGTTACATC 13115 28 100.0 32 ............................ ATCAGGCCACTTGAATTCGTGCCGATGAATTT 13175 28 100.0 32 ............................ GCTTTTCCCCAGTCTCTACGTGGCTAGCGAGG 13235 28 100.0 32 ............................ GCCCCAGACATCCAATGGCCACTTGAGCCTCA 13295 28 100.0 32 ............................ AGTCACTGCGGCTGTGAATGAAAACACCACGG 13355 28 100.0 32 ............................ AGCTCGGAATTCTTTCAAGATGGCGCGGCCCG 13415 28 100.0 32 ............................ ATTATCGTGAATACCATCATCAGGAACGGAGC 13475 28 100.0 32 ............................ TAATCCTGTGGCTGAGCTTGAGCTTGTCGATT 13535 28 100.0 32 ............................ ACCAGACCGTCGTCGTCCTGAAACACGGGGTC 13595 28 100.0 32 ............................ AGAAGTTTGAGCACAAAGATATGGATGCCGTA 13655 28 100.0 32 ............................ GCTGTCGTCGGCTGCGGTGCAGGCGTTGAAGG 13715 28 100.0 32 ............................ GCACATGCCGATCTGAGATACCAACGGCTTTT 13775 28 96.4 32 .................T.......... GATAAACATCAACTCACGATAAACGGTACTTG 13835 28 96.4 32 ...........C................ ACGTACTGTATTACGTGGGTAGACTAATCGGA 13895 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 45 28 99.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGATGTGACATACGTAAGCTTTGTGCGCAAGCAGGTAAAATCACCGGAGCGTATAGAACGGGACATGCAGCAAAAAGCCACATTATGGGCAGCTAAATCTGGTAAATCGCTAGAGGACTGTTTAGCGGATTTAGAGCAAAGTAAACCGACAGCATTTTGCTCTTTGCCGTTTATTTACTTGCATAGTCAGCAAACTAAGCAGAGATCACCAGAAAAAAGTAGCAAGTTCCCACTGTTTATTCAGATTCAGCAACAAAGGGCACCGCAAGAAGGGCAATTTGATTGCTATGGGCTGAGTGCAAAAGTAAACGGGCTTCCAGCTCTGGCTACCGTTCCACACTTTTAAATTGGACGAAAAAGGGTAAGTTTTACCCTTTATTTTGCTCTTTAAAAATATGCTTTAAATACATATAGTTACATTGGGTGGTTTTTCATAAGGTAAAAATGCGTTTTTAACTCTAACTACCTGTTGTAACTTATTTTTATTGATTTTCTCTATT # Right flank : AGATAGGATTAGTTCATCACAGTGGCTAGCAAAATCACGCTTGAAATCATAACAAATGATTAGTGATTACTTTGTTAGGTAGACAGCCATGTATGTACACATTAGAAAATACCGCTTAGTCAATGCACCTTGGCGTAACGTGATCAAACTTGATGATTACGATGTGCTCATCAAGCAAATTATCAGTAGTGTATTTGGTGCCGATCTTGTTGATGTGGTCGTTGAAGAGAGTTCATTTACCATTACGGTCAATTGTGAGGCGGAGAAACTGCCTCATGGCGTACTGGTGAATATGGGCAAGAAATTAGCGGCAAATCTGCAACACATCACTGCTTGCGCGATGCGAACTTATCAAGTGAAGTCACATCCCGATAGCCGCCAACTGTTCCATTGTTTTGATGCCGCATGTTTATGATCATACACCCCAATCCCTTACATAGGGATTGGGGTGATTCTGTTTCTTATGGCTAAACCAGGAACGAGGGAAATTTGCTGTGCAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //