Array 1 62934-61515 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIVG01000001.1 Zymomonas mobilis strain NRRL B-4286 Ga0314518_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 62933 28 100.0 33 ............................ AACAACACTGACCCCGCGGGCGATAATAGCGAT 62872 28 100.0 33 ............................ ATCATCACCCTTTTTATAGTCTTCATGGATGGA 62811 28 100.0 32 ............................ GCCGAATGACAAGCTTGCGATTTTTGATTGCA 62751 28 100.0 32 ............................ GACGAATTACACGCTTGCGATTTTTGATTGCA 62691 28 100.0 32 ............................ GTATCAGGTCATCAACATTCTTTGCCGAGAAA 62631 28 100.0 32 ............................ ATGATAGCGCGCCTCGGCATTGATGCAGATGA 62571 28 100.0 32 ............................ CATATCTCCGCGGCTTTCTCTTCGCCATTAGT 62511 28 100.0 32 ............................ TTTCCCGACTGAAAATATACATTCTCTAGCAA 62451 28 100.0 32 ............................ GCGTCAACAAGGAATTGAATAAAATGACTACT 62391 28 100.0 33 ............................ AGATCTGTTATTTTGTTATTTTTCAAAAATAAC 62330 28 100.0 33 ............................ TTAGATGTTCTCATCACGTGGTCAGTATCTCAC 62269 28 100.0 33 ............................ GCAAGCCATGACTTACCGTTTCCAACCTCCAAC 62208 28 100.0 32 ............................ GAATGAGTATTTAGCCATAATTCAATCCTTTC 62148 28 100.0 32 ............................ AATGGCAACTTCAGCACTAACGTCAGTTTTAG 62088 28 100.0 32 ............................ TTATTAAAAAAGGCGATACCGTTATCTTCAGT 62028 28 100.0 33 ............................ AAATTATGCTTTCGAGACAGCGACTAGAACCGG 61967 28 100.0 32 ............................ ACCAAGCGACGGTGTCCGGGTCTTTGGTCAGA 61907 28 100.0 32 ............................ TTGCGCGACTTGGCTCCCAAGGCCGACACCAA 61847 28 100.0 32 ............................ TAGAAAACATTACTCCTAGGTAATATTAAGAT 61787 28 100.0 33 ............................ TCTATAAAATAGAGTTTTGTCGCCCCGACTGGC 61726 28 100.0 33 ............................ TCTCTAAGCCCAATATCAGCCAAAGTCTTTGGC 61665 28 100.0 32 ............................ TAAGAAGCAACGCAGCAACATGAGGGTCTGGA 61605 28 100.0 32 ............................ TGTCCGGTTCTAGTCGCTGTCTCGAAAGCATA 61545 28 89.3 0 ............G.............TT | GTT [61521] ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATCGCGTGGTTTTGCATTAGACACCGCTGTATATTTTGAAGCATAGCCGGAATTGAGTTTAATTTTGGCCTGTTGCGGCTAAGCCGTTTTAACCGCGGATAATGCGGCGATATCCTATTTTCTGACGTTGGCATCCTTATGGCCGAGTGAAGGTCTTGGAATGGATGCGTTTAGTTTTCAGCCCTAGCATAGCGAAGATAGACGGGAATAAGAGCCATTCAATGCTGCACATCGCTGAAGATTGGTCGAGAGAATAGCGGTGTGTATTAGCCTTGAGTATGGATTTTCTTATTAGCATGGCCTAAAGAATTGATGGCTTTTTGATATTGTGAAGACTCTTGCGGGATCAAATTTGACCCTTATTTTGACCCTCTTTTTTCGAGGGTATAAAAAATCCTTTCAATTCAATATGTTACATATGGGCGTATTTTTTAGGGTTATTTTGCCTTTTTGGCGAGATATCCCTTTATTTTAGGGGTAATTCTATCTTTTGCCTCTA # Right flank : TTATTGCATTGGGGTGGTTTTAAAGAGGGCATAAAGCCCTCTTTTTTTTAAGATTTTTATTGAAAAAACGGTTTGTTTTTTATTGGGGATTAGTCTTCTGCGACGACGAGGTCGGTCTCTTTTTTGCGGCGTTTTTCGCCGAAAAGCATAGCGAGCAAGGCCATTTCATAAAGCAGGATCAGAGGCACCCCAAGCAATAATTGTGAAACGATATCAGGCGGGGTTAAAACCGCAGCGATGGCCACAGAGGCGACGATCGCATAGCGACGGCCTGCAACCAATTGTTGGCGGGTAACAAAGCCTGCCCGTTCCAGCAGCAGCAGCACGAGGGGCAGAAGAAAAGCGACACCAAAGCCGAAGATGAATTTTGTCACAAAATTCAGGTAATTACCGACTGCGGGTAGAGCCGTTTGCTGCACGCCGCCAATATTGCCTTGATAGCCGAGCAGAAAATGAAGGGCGATGGGCATGGCGACATAATAGGCCATAGAGGCACCGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1201593-1203125 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIVG01000001.1 Zymomonas mobilis strain NRRL B-4286 Ga0314518_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1201593 28 100.0 32 ............................ ATACGCCGAACGAATATTTAGACATGATTCAA 1201653 28 100.0 32 ............................ ATTCGATCATAAAGCTCCGGCGAGATACTAAG 1201713 28 100.0 33 ............................ CTATAAGCAGACAGGTCTTAACGTTGGTTTTGT 1201774 28 100.0 32 ............................ TAAGATTCCACCATGCCTTGGCTTTGTGTCGT 1201834 28 100.0 33 ............................ TCGTCGGGGTTTTCGCCAATCCATTTAGCGATA 1201895 28 100.0 33 ............................ AAAATCTATTCCGACAATCCAGCAAATTCAGCT 1201956 28 100.0 33 ............................ GAATTAGCGGGAAACATCGAAACCTATCACATT 1202017 28 100.0 33 ............................ ACCGTGGTCAGGGATAATCCGCCAGATGCGCTA 1202078 28 100.0 32 ............................ TGACCACGCTAGACTTAACGCGCGGATAGATT 1202138 28 100.0 32 ............................ TTGATACTGTCAATGATGGTAAGGGTTCTTAT 1202198 28 100.0 32 ............................ ATTCACGGAAAAGAACTGGAATTTGACCGAAC 1202258 28 100.0 32 ............................ GTTCCGAATGGCATGGTCTCTTACGGCATCAG 1202318 28 100.0 32 ............................ ACAGTCTTTGATCTGTCTTTGACTGATTTCTG 1202378 28 100.0 32 ............................ CATGAAAAATGGAGGTCATTGGCCTGCCTTTT 1202438 28 100.0 32 ............................ CCTGCCTTGGGCAGCTCTGGCCGGTAATCTCA 1202498 28 100.0 32 ............................ GATCAGCGGACTTATTGCGAGCCTCTTCAAAA 1202558 28 100.0 32 ............................ CTGTCGTATCTGCTCACTTGATCACAGAAGAG 1202618 28 100.0 32 ............................ GGATGCGGTAACTTAGCCCAGCTTGGCAATAT 1202678 28 100.0 33 ............................ GATACGCCGTCCTTTTTTGTGACAGCAATGTCT 1202739 28 100.0 32 ............................ GATCAGCGGACTTATTGCGAGCCTCTTCAAAA 1202799 28 100.0 32 ............................ ATTGCCTTCCATTTTTCCCACAAATCTTCTTC 1202859 28 100.0 32 ............................ ATTTGATACCGCCAGAAGGCGTTCGCACCAGT 1202919 28 100.0 32 ............................ TCGGCAATCGGGATGAGTTCGATGTCGCCCTT 1202979 28 96.4 32 .............C.............. TATACCAAACCACGGGAATGTGATCACAAGAG 1203039 28 96.4 32 .............C.............. ATCGGCGGCCTGCAATAATTCGGTGAACTCTT 1203099 27 85.7 0 .............C.......A.-C... | ========== ====== ====== ====== ============================ ================================= ================== 26 28 99.2 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CTCAAAAAGGCAGGGGTGCGTCTGGCTTATATCTTAAACCATCGCCTGCGCTCTATTCCGCTTTCCTATTTTCTTCAGGCACAAAAACAGGACGCCGCCGCCAATAATAACGGATAATTAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCGAGCCGCCTAATCTACATCAGGAGAAATAGCCAATATATTTCTGGATATATTGGTTATTTTCTTCAAAAAGAAAAAACGCTATCAAAGACAACACTGCTTTTTGATATTGTAAAGAATACACCGCCTCAATTTTTGCCCCTAATTTGCCCCTCTTTTTTCGAGACATTTAAAAATCGTTTAAAATCAACAACTTAAAAGCAAGCCTCTTTTTTAGGGTCATTTTGCTTATTTGGCATAATATCCCTTTATTTTAGGGAGATTTCTATAAATCTCTTCTA # Right flank : ATTATCAAAACCGACGCCGATCATATCCCCGCAGGTAGTCTTCAACATAAAAGCATTTAAAAACAACTACTTAACCACCCACATATTACCCCCTTCAAAAAATATTATACATTTTTTCAAAGATTTAGGTTGACGAAAGCCAAAAATCCGCGCATTTGCGCTTGAGGTGGCTCGATGGCGGAGTGGTTACGCAGAGGACTGCAAATCCTTGCACGCCGGTTCGATTCCGGCTCGGGCCTCCAGATTTCTTTTTATCGGTTGAGAGCAAACGGCCTCACGCCGCCGATATCTTCTAAATTTATCCTCCTAATAGATACATCCTGCCATAATGGGACAGCTGTCAGCTATCCCCTCAACACCACCGTTCTATTTCAAAACATTCTTTTCGCTTTTCTTCCCACTATCCCGATAATTCTCATATCCTCTCTTTTCATCGCTTCGATCGCCCTCTTTTGATATAGATGCGAAACCGCTATATTACGTCTTCACAGGCTGGCGAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1771964-1770722 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIVG01000001.1 Zymomonas mobilis strain NRRL B-4286 Ga0314518_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================== ================== 1771963 28 100.0 40 ............................ CGACAGACACCAACTTTTCATATTTTTGATTTCGTCGGGC 1771895 28 100.0 32 ............................ CAAGTCAATCCAACGCCGACGCTTGACAATCT 1771835 28 100.0 34 ............................ CCGATCAAGTCGCAAATGTCAGGCGCGATAATAT 1771773 28 100.0 32 ............................ AAATGAATATTTAGTCATGATTCAATCCTTTA 1771713 28 100.0 32 ............................ TTTGATAGTTATACGGAGCAGTCCCAATCCGG 1771653 28 100.0 32 ............................ ACGCTGGTTGATCTTAGATGTTCTCATCACGT 1771593 28 100.0 33 ............................ CTTTTCAATCCGCTTAGATTGTTACTCTCAAAA 1771532 28 100.0 32 ............................ AACTTGACTACCACATTCGCACGGCCAGTTAA 1771472 28 100.0 32 ............................ ATTATTGAGCAAATAATTTTTAAATACTTTCA 1771412 28 100.0 32 ............................ AAAGGAATTGAACATTGAAACGCAGGTATCGA 1771352 28 100.0 32 ............................ AATCAGCTGTTGGTGGCAATGATCTGATTAAC 1771292 28 100.0 32 ............................ TTGCCTGTATTTGATGGCGAAGCCTCATAAAC 1771232 28 100.0 32 ............................ ACGGTAATCTCACGCCGGAAATGCGGGAGAGA 1771172 28 100.0 32 ............................ AATATGTCCTCCTGCTGAAAGACAAGATTGAT 1771112 28 100.0 32 ............................ TCAAAAGACAACCCCATAGTGTTAATCAGATC 1771052 28 100.0 33 ............................ CTGAAGGTGGTGGCTCGGGGGCGGCATTAACAG 1770991 28 100.0 33 ............................ AGGAACCCGCTAACAAACTTACGCGCTCCAAGC 1770930 28 100.0 33 ............................ AAAAAGTTGGACAAACAATACTGTCACGATCTC 1770869 28 100.0 33 ............................ GACATATCATTTCAATATTTATCCGCACCCAAA 1770808 28 100.0 32 ............................ AGTCGGTGTCTTTGAGAGAGCAACCCCAGTGC 1770748 27 78.6 0 A............T......A..-.T.C | ========== ====== ====== ====== ============================ ======================================== ================== 21 28 99.0 33 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATCCGAACAGGTGGCTATCGCCTAATCGCTCAAATATATTGAGATTTGAAAGAGGGAGTCCGTGAAAAGGCTCCCTTTTTTATTGATGATTATTGACGGGAAGTAAGTTTTAAGCGGCCAATTTTAGGCTTTTTTCTATTCTAAAAGTCGAGATTAAAAGGCCTATTCCTTTTGCAGAGGAGACAGTGAGAATGAGGTTTTTATTGGTCAATCGGAATAATTATGATCGGTAGAATATGAGGTAAATAAATAACCTAATTTCATTCTTGCTATAATTTCCGATCGTTTCCTTTTGTAAAAGGAAAAAGACGCGTTAAGATCACGATCTGTTTTTTGACATCGTGAAGTCTTTTTGACCCTTTATTTGACCCTCTTTTTTGGGCATGTAAAAAAATCCTTTAAAATCAATAGGTTAAAAATAGGCTCTATTTTTAGGGTTATTTGGCTATTTTTGCCCGATATTCCTTTCATTTAGGGGGATTTTTAATTATTTACTCTA # Right flank : TTATTTAAGTGTTGTTCTGTTTCATGGTTGGGGGATATTTTATCGGAGGCTATTCTGTTCTCAAAATATGTCGCCGGTACTTCTTTTTCTTCTCTGTTTTCTCTTTTTAGTTATTCCGACCAAAATAAGATTATTTGTGGTTTCAAAATAGCGGTTAAAAAGTAACGCTTGCTCCGTCATTTTGAGTTATTGGCGGAATCTGTTTTTCATTTCTTTTTATGGCTCTTATGAAAATAGGGAAATGTATTTTTCTTATTTTCTATTTTGTTAGAAAATTTTTATTCATTTTATTGAAATGATATTTTAACCATAAGAAGCCTATGACCCATCGACCTCTTTCTGATCAAATTGCCCTTGTCACTGGTGCCAGTCGCGGGATTGGTGCGGCAACCGCCAAAGCGTTGGCTGAAGCGGGGGCGCATGTCATTCTGGTTGCGAGAACGGCAACCGATCTCGATAAAGTCGAAGAACAGATTTATCAAAAAGGCGGATCAGCGACG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //