Array 1 575-351 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMZZ010000218.1 Clostridium botulinum D/C strain IZSVe-TV_2454_6_14 NODE_218_length_619_cov_3.72878_ID_17277, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 574 29 100.0 36 ............................. CCAATTACTTGAGATATATTTTTGAAAATAGCTTTT 509 29 100.0 36 ............................. TACAGAATAGTATATAATTTCTTTCATTACTTTTTT 444 29 100.0 36 ............................. CTAAAACTTGCTATATATTGCATTCTGTACTTCACC 379 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ==================================== ================== 4 29 100.0 36 GTTTTATATTAACTATGTGATATGTAAAT # Left flank : ATGTAAATCGGTATCGGGATACATTTTTTTTAGTATCTTACATA # Right flank : TTCATTTAAATCACCTCCCAATAATATTAATTATTAACAGTTTTATGGTTCTTTCCAATGTTTGTTGAGTAAATATTTAATTTATGATAAAATTACTTATAATTTGATAATACTAAGGAGTTTTTTATGGATGAATTTATAAAATTATTGGATGAAAATCTTGATTACATTAGTCATAAAATTATAGATGATACTTTTTATATACAAGATCAAATAATGATGTTTTAAAGTGGTTAAAGAGTTATCCTAACATTAAAGTAGTTTCTAGAGATGCTTCTATTACATATAAAAATGCTATTTCTAAAGCTCATCCATCTGCGATGCAGATTAGTGATAGATTTCATATGCTTA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 968-213 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMZZ010000037.1 Clostridium botulinum D/C strain IZSVe-TV_2454_6_14 NODE_37_length_26511_cov_9.94953_ID_16941, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 967 36 100.0 34 .................................... ATATAAATCTTATTTCCATCAAATACATATCTAG 897 36 97.2 34 T................................... AATGCAAGTACTGTTTTGAGATGGCTACAGAAAT 827 36 97.2 35 T................................... CATTAGTTATTGAAGAATTACCATCATTTCCACCT 756 36 100.0 37 .................................... TATTTGAGTTGTTAGACTCTAATAAATTAAATGGATT 683 36 100.0 37 .................................... ATAGATGAATTAGAGGATTTAACTTATGCAGTAGATA 610 36 100.0 36 .................................... TTATCTAAATTGGGACTACACGAATCATGCACAAGG 538 36 100.0 38 .................................... TATAAAAGATGTTGAAGCCTATAGAGCTAATAAAAAAG 464 36 100.0 36 .................................... AAAAGCATTAGGACATACTGTTGTAAATTGCACTAC 392 36 100.0 37 .................................... ATAGGAAACTTTGATAATGTAGTAAAAAACTAAGTAG 319 36 100.0 35 .................................... CTTCTAGTTCTTCTTTAGTATAGTCTTTACCTTCC 248 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 11 36 99.5 36 GTAATAAAGATATTAAGCTCCATAGGAGATTGAAAC # Left flank : GCATTAATGAAAGAAATTGAATATATACCGTTTTTAATTAGATAAGATAGGAGAAAATGTGGTATGATGTATTTAGTTAGTTATGATATTGTTAATGATAAGAAAAGAACAAAACTTCATAAATTGTTGAAAAACTATGGTGTAAGAAATCAGTTCAGTGTTTTTGAATGTAATTTGGATGATAAAAAGTATGTTGAACTTGTATATAAGATTAACAATATTAAAGTAGAGGCAGGAGATAGTATAATGATTTATCCATTATGTTATTCTTGTAAATCAAAAATAGTAAGAAAAGGTTCATTTATTGAAATAGATGTAAAAAATATGATTTTTTAATGCGCCAAGCTTAGTGTTTGAAAAAGTACGTTGACATGGCGATGGCTTTAAATAGCCATTTGTAGATAGTTTTTTATAGTATTGGTATAAAATTTAAAATAATAATAGATACTTTGCGAATAATGCGGGTCTATGTTAGTGTTTGTGAGGGATAAAACGCCGGC # Right flank : CGAAAGTAGCTAGTCTTGAATGGTTAGCTACTTTTTATGTAATAAAGATATTAAGTATAAGTGCTATTATGGGAATGCAAGAAAGTGATCATCTAAGGATGTAAGAATTAGATTTATGTATAATACTATAATTACAAACATTTAAACTGGAGGTAATTATGATTATACAAATGAATATTAATTCTGAAATACAAATAGATAAGTTAGAGGATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATAAAGATATTAAGCTCCATAGGAGATTGAAAC # Alternate repeat : TTAATAAAGATATTAAGCTCCATAGGAGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 1 17122-15314 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMZZ010000042.1 Clostridium botulinum D/C strain IZSVe-TV_2454_6_14 NODE_42_length_24380_cov_15.0753_ID_16933, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 17121 30 100.0 36 .............................. TGATAAAAAATTACCGTATATTTATATAATAATAGA 17055 30 100.0 36 .............................. AGATGTCTCTAATACACTTCTATCGAGTAAAGTTCT 16989 30 100.0 36 .............................. GCTTCAAGGACATTAGTATCTACATTCCCATTATCG 16923 30 100.0 35 .............................. TAAGATACTAGATTTCCCTTATTCATTGCAGTTAA 16858 30 100.0 35 .............................. TCTATGGTTTTATCTTTATTTAGATACTCTTCTAT 16793 30 100.0 35 .............................. TTTGCACGTACTGGACATAAACAACATGAACAACA 16728 30 100.0 36 .............................. GAAACCAAAAGCCATCAATAGAAACTCACGCAATAC 16662 30 100.0 38 .............................. ATAAAGTGCTTTGAATTCTCTCTAAAATTTCTTCCAGC 16594 30 100.0 35 .............................. TAGGGTAACGACCTTTCTATAGTAAATTTCATATA 16529 30 100.0 37 .............................. ATTTCTACACTGTCTAAACGTTCTAATGTAAGTACAA 16462 30 100.0 37 .............................. AGGCTATGTCTGGAATGCTTGCAATTATAAATGCATC 16395 30 100.0 37 .............................. TCTTTATTTTTAGTTTCTAGTTTTACCTTCTCACCAA 16328 30 100.0 35 .............................. GAATTAAAACTTCAAGAAGATAAAATTAACAAAGA 16263 30 100.0 36 .............................. AGAGAAGAAATTATCATCAGACACTATTAGAAATAA 16197 30 100.0 36 .............................. TTATTATTACAAAAAAACATTGCTATAAATCAGCAA 16131 30 100.0 36 .............................. ATGATGAGATGAGTTAAGATAGGTAATATCGTTCAA 16065 30 100.0 36 .............................. CAAAAATAAAAATAATATTAGACAAGGTTCTCAAAA 15999 30 100.0 36 .............................. ATAGTAGAATATATCGGAGACTTAACTTGTAAGTAC 15933 30 100.0 36 .............................. CAAATCATTTGACGTGCAATGAAGATGTAAATTGCC 15867 30 100.0 35 .............................. GTCAATAATGATACTAAAAAGAATTTATCTTTAAA 15802 30 100.0 36 .............................. ATTAAAGGAATCTCCTGAATGGGTTCAAGAATATAT 15736 30 100.0 37 .............................. TAAAGGATCCAGGAGATATAAGAATCAGTTGGTATTG 15669 30 100.0 36 .............................. ATATCAGTTTCTAATTTTTGTCGTATTCTCATTAAC 15603 30 100.0 36 .............................. ATCCAAATCCTAATACATTTAGGATTTCAACTAGTG 15537 30 100.0 35 .............................. TATATTAAGTTATCAAGTTAAACATAATATACTAA 15472 30 100.0 34 .............................. TTAAATCCTTATATAAGTATTGACGGAGGTTTTC 15408 30 100.0 35 .............................. CTGCATTAAAATATTTTAAACGTCTTAATACGTTT 15343 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 28 30 100.0 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : AAGCCATTTAGGCTTAAGGAGAAGATATAATGAGTAAAAAATTTAATTATAATTATGCATTTTTATTTTATGATGTGAAAGAAAAAAGGGTAAATAAAGTGTTTAAGGTTTGTAAAAAGTATTTAACTCATTATCAAAAATCTGTTTTCAGAGGTGAGATAACACCTTCTAATATAATAAAATTAAGAGAAGATTTAAAAAAAGTAATAGATGAAAGTGAAGATTTTATATGCATAATTAAATTATTAAATAATAAAGTATTTGGAGAAGAAGTGCTAGGAGTAGATATTGAAACAGCAGAAGATTTAATTTTATAAAATTATTTTACCAACTGCTTCGAAAAAATAAAACGGTCAAAAGTGTTGATTTTACTGGTTTTCTATGTAACTTAAACTGAAAAAAATAAGTTGTTAAAATTGGTTGGGAAAAAATTAATGAAAGTGTTTATTTTCAATAGGTTTAGGGGTATAATAGAAACAAGGAATGGCTATTTTACTATG # Right flank : AGAAAGTAAGTAAATATTAATAGAAGTTGTTATAACAACTTCTATTATGAGAAGAATTGTTATAAAAGACATGAATGATAGATGTTTTTGAAAAATATACTCAAAGTTACTCAAAAAATGACTAATATACTCAAAAATTTAAAACACCCCTATAAGTAAAAACTTATAGGGGTGTTTTAATTATCTGGAGTAATTAAATCTATATTGTGTTCTTGAAAAAACTTAACATATTCTTTAGGTGGAAGCTTATCGGTAATAAAACAAGTGATATCTTCCAAATTACAATAAGTTTTAAGAGAAGCTGTATCTAATTTTGAGTGATCAGCTAAAAGTATTACATTTGAACTATTTTCAACTACTGTTTTTTTTACATCATATTCAAAATTAGATGAATTAGTAACTCCTTTATCAATAGAGAAACCTGTAGTGGCCATAAATGCTTTCGATATATTATAATTTTTTAGGAAGTTTGAAGCTTCTACACCGATTAAAGAATTAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 6323-7075 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMZZ010000125.1 Clostridium botulinum D/C strain IZSVe-TV_2454_6_14 NODE_125_length_7095_cov_7.03092_ID_17123, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 6323 29 100.0 36 ............................. ACGGATGATTTGGCGGTGGTGTTGCTCTAAGTCTAT 6388 29 100.0 36 ............................. TTATTCTTCGCCCTCCTTAATAAATACAAAAGGAAA 6453 29 100.0 37 ............................. AAAGGTAGTTTAAGGCTTAGTGATAATGTACTACTTA 6519 29 100.0 39 ............................. GGGTGTTTTAAAGACAGATATTTTAAAATGGGTGCGTGT 6587 29 100.0 37 ............................. TTGCTTTCGCTTCACATCCGCCATATTCTTCTAAAAA 6653 29 100.0 37 ............................. GAATTTGTTACGTGTGAAAAGTATTATTATTTTATAT 6719 29 100.0 36 ............................. TTTTGAGATTTAGCTGCTATAAAACCTAGTGCAATT 6784 29 100.0 37 ............................. TTTTTTATCCCTCCAACATTATAATTCTTTTACTATT 6850 29 100.0 36 ............................. TTATTTCTCTTAATTTCATTTCTTTTAACATTTTAA 6915 29 100.0 37 ............................. TCATGCAAAACTTCACATTGATATACTTTCGCTCTAA 6981 29 100.0 37 ............................. TCTAATACGTCTTTTGCTATTTGTAATTGCTCGTCCA 7047 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 12 29 100.0 37 GTTTTATATTAACTATGTGATATGTAAAT # Left flank : ATTGAAGATGAAAAATATAAACCTTTAAAGGCATGGTGGTAATTGATGTTTGTTATACTAACATATGACATTGAGGAAAAAAGAATAAATAGAGTAAGAAAATTATTGAAAAAATATTTAATATGGACTCAAAATTCAGTATTTGAAGGAGAGATTACAGAAGGGAAATTGCATAAGTGTTTATCTGAGATAAATAAACACATTGACAAAAAAACAGATTCAATATACATTTATAGAGTTAAGATGAGCAAAAATATAACGAAAGACGTAATAGGTATTGAAAAAAGTTTCGATGAACTATTTTTGTAAATACAATTTGCAGTATTGCAAACAAATGTTCTCATTGCCTTAAAGCCTTGACATATCTAGCATAAAGGGTATTATTTAAGAAAAATCCAAAACACTACTTAAGGTTTACTGCAAAATTGCTTAAATTAGAGTTATAGCCGTTTGGTTCAAGGCTAGTAGTATCAATAGGTTCAGGTGTTTTGTATTTTAGG # Right flank : CGTTATCGGGATACATTTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 896-537 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMZZ010000140.1 Clostridium botulinum D/C strain IZSVe-TV_2454_6_14 NODE_140_length_5665_cov_7.54313_ID_17147, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 895 29 100.0 36 ............................. GATTTTAATTTTAGTAATGTCGTTAGTATATGATTA 830 29 96.6 36 .........A................... AAATCAAATGGAGGGACAAGGATGGTATGGTTGTTA 765 29 100.0 40 ............................. TTTTCTAAGACAACGTTGAACCATAAATACCCGATATATC 696 29 100.0 36 ............................. TCTACAATAAGACTAAATGCTATTCCAACAACTAAA 631 29 100.0 37 ............................. GAAGGTACTGGTGCTTTATATAAAGATACTGCTTTAT 565 29 96.6 0 ................C............ | ========== ====== ====== ====== ============================= ======================================== ================== 6 29 98.9 37 GTATTAATAGAACTATGTTAGTTATAAAT # Left flank : AGGTTAGTTTTAATCATTTACTAGCGTTAATGATATTAGCATAGGAGAAATATTTGATAATATTTTTGAAAGTGGTGATTTCATTGATTGGATATGAAAGCTTATATAATGAAGACTATTTGCAAATAGGAAAAGGGAAGTAGTTTAGAGTAAAAATGTACATAAATACTTATTTTAATATATATATACAAATATAGAAAAAATTTAACAATAATATTGAAAAATAATTCTTAAATTACATAATTATAGTATAATAATAAAATAGAAGGGAGATGAAGATAATGGAATTCAAAAAATTAGTATTAACATCAAAAATGGCTCATTTTAAAAATGGAATTAATGGAAAAAATCAAAATACTTTTAGAGTTCCTCCCATATCAACCATAGTTGGTATATTAAAAAACATCTATGGCAAAGACATTAAAGATTTTATATTTGGATACACCTGCAAATATGATGGTATTTTTAAAGATGATAGTCAGGCATAATATGTTCTATTT # Right flank : CATAGAAAAACCTTCTTGTAATATTTTTAGTTCTGTTAAGTTATATGAACATTGATTCCTCTCAACCTATTGAAATATAATAGATTTTTCACAAATATATTACCTCCCAGAAAGGAGAGAGAAATCAATGAACAAAGCTAATAAAGAAATCATTTGTTCTGGTTGTTGCAGCCATAATCTTTTTAGGTTTGGAAAAGACAAAGAAGGAATGATCACTTTCTTACATTCCCATAGTAGCACATATATATATTCACGACTTTAGTTCAATAATTAATTACTAAACATTTATTATAAGTATCATTGGTATTGTAACTTAATAGGTCATATAACAAAGATATATATTAATATATCTTGAATATATATTAATATATTGGTAAATAAAGGAGAGAAGATATGAGGAAAGTAACGAATATATTGACATCATTAAATTTGTTTATTTTTTCCATATTAATTTTAATACTATAATAGTGCATTTTAAATTGAATAATTTTACAGTTAAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAACTATGTTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 973-95 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMZZ010000109.1 Clostridium botulinum D/C strain IZSVe-TV_2454_6_14 NODE_109_length_9265_cov_6.61395_ID_17091, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 972 30 100.0 35 .............................. TTATTTGTAGCTATAACATCTTTGCCACCATCACA 907 30 100.0 33 .............................. GGGTTTTAGGACCTGTAAGATATTGACTAACAA 844 30 100.0 36 .............................. ACATTTTTGTGTTTTAAATATTAACTTGCAGTTCTA 778 30 100.0 35 .............................. ACAATAATCTGATTAAATGCATGGCGTGTTTGTTT 713 30 100.0 34 .............................. TCCCAATGTGCCAATTAGAGTTGGTATAAGTGGA 649 30 100.0 36 .............................. AATGCTTTAAGTGCTGACAAAAGTGGATTTAAATAC 583 30 100.0 35 .............................. AAGTTGAGAAAAGATATAAAAAATGGAATTCTTAC 518 30 100.0 36 .............................. GAAGAAATTCCAGAAGAATAAATCGTGCCTATGGGG 452 30 100.0 36 .............................. AAACAAAAAGATATTAAGGAGGTTTCAAAAGGTACA 386 30 100.0 36 .............................. ATATGAATAAGCATATGAGAGGATGAAAATAAAATG 320 30 100.0 36 .............................. TGTGTGAATTTCCCTTTAAATATACATAAAGTCTTC 254 30 100.0 34 .............................. TCATTCGTTGCTGCGAAAGTAGTATCTCCTTTCA 190 30 100.0 36 .............................. TTTTCTTTTCTATTAATTCCATGATAATTCCTCCCT 124 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 14 30 100.0 35 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : ATAAATAATGAGCCTTGGACTAATAAAATGGATATAGATTTATTAAAAAAGAGTATCAATGAGAATTTAATAAAGAAGATAAAAGTTATTCAGGATATAGATGAAATTTTAGAACATGATATGATAAAATCTATAAAATTAAAAAATAGAATGCCTATAGGATGTAAATACAAACAAATCAAACTATTGGGGAATAAATTTGAAATAGAAATTAAAGATGATGATATATCGCAATTCATGGCAAATATAGCTGTGGCAGTAGGAATTTTAGAAAAAAATTCTCTTGGTTATGGTTATTGTTTATACAAAAGTAAGTAAATTATTTTCCCAACCGATTTAAAAATTAAAACCAGCTATAATCCTTAATTTTACTGGTTTTGATATATGTTTAAGTTTCAAAAATGGCATTACTAAAATCGGTTGGGAAAAATATAATAAAAGTGTTTATTTTCAATAGCTTTAGGAGTATAATAAAAACAAGGAATGGCTATTTCCCTATG # Right flank : TTTTTCTCTAATTAAAAATGGTCTTATGTCAATATCATGGACACGAAAAGTCAAACTTTTTTATGCTACACTTCTAGCTAATAATTCACATTGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //