Array 1 76696-79895 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSHB01000002.1 Bifidobacterium pseudocatenulatum strain AM38-8 AM38-8.Scaf2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 76696 33 100.0 35 ................................. TGGTTGGTGGCGAGCGTCTGATCGGCGTCGTTCAG 76764 33 100.0 32 ................................. CAGCATGACATACAGTTGGGCAACGCCTACGT 76829 33 100.0 34 ................................. TTGACAGTGTACCGTCCGCCACCGGTGGCCGGAA 76896 33 100.0 37 ................................. CCCAAATTCCACGTCCACGCCCACGGCACCGCTTCCA 76966 33 100.0 35 ................................. GCCATCGTTGGTGCGGACGTAGAATTCGTCGCCGA 77034 33 100.0 34 ................................. ATCACCTCAGCCGGCGAGGTCTACGCCTACCGCG 77101 33 100.0 37 ................................. TACGTGCTCAGGTCATACGGCCATACAGTGGCCGCGG 77171 33 100.0 34 ................................. ACCATCGGCATTGCGCGCGCGAATCAAACCCGAA 77238 33 100.0 35 ................................. ACCCAGCCGGGCGCGGTGCATCGCGGCGAGGTCGA 77306 33 100.0 34 ................................. ACGCAGGCGAGCTTCGAGCCGCACGCCGCGCAAC 77373 33 100.0 34 ................................. TGTACGCCAATACGGACGGGTGCATCCTATCCGG 77440 33 100.0 35 ................................. ATTACGTCCGACATTCGGCAGGAGATGGACTCGAC 77508 33 100.0 34 ................................. AAATGGGTTTTCATCGTATCGTCAATAGTGCGCA 77575 33 100.0 34 ................................. CGCGCTCAACGCCCACACCGCGTGCAGCAGGCCG 77642 33 100.0 36 ................................. CGTTGCCGCGGTGTCGGGGGCAATAGCAACCTCCGT 77711 33 100.0 34 ................................. AATCTGCTGTCCGTCCTTGACGGCCTTGCGCAGC 77778 33 100.0 34 ................................. CTCGCACAGACGGACGACGTTTTCCGTGGAATCG 77845 33 100.0 36 ................................. CAAGGTTGTGAAAGGAATCAGCGACCTTGCCGAGAA 77914 33 100.0 35 ................................. CTGACGTATCCCTTGCCGCTCAATGCCTTGTGCAT 77982 33 100.0 33 ................................. TTAACGATGGGGGCGGGATGTTCCCGCCCCCTA 78048 33 100.0 35 ................................. TGTGAGCTCTCGCATGCCGTTGATGGACGTCACCT 78116 33 100.0 33 ................................. ATGCAGGAGGGAGAAAAATGCTGAACGATATCA 78182 33 100.0 34 ................................. AAGAACGTGGACCCGCTGAAAGTGGTGGGATTCA 78249 33 100.0 35 ................................. AAGCTGGAGCATGGCGTCAGCTATCAGACTTGGCG 78317 33 100.0 36 ................................. ATCGACCTGAACGATCCTGAAACCATCAGCGGATGG 78386 33 100.0 38 ................................. GTTAAACGGAAAATCATGCAGGCATTGCAGGAAATCCG 78457 33 100.0 35 ................................. GCCGCAATGAATGCGGCGAAATATCCGGCACGCCA 78525 33 100.0 36 ................................. CAAATCGTCCAAGGTTTTGTTGATGCGCTCGAACTG 78594 33 100.0 34 ................................. ATCGATGAACGAGCGGAAAAATCCTTTGGAGCGG 78661 33 100.0 33 ................................. AGCCGGGTTTTGCAATGCTACCGCCTTGTGCGC 78727 33 100.0 36 ................................. CACCGCATCCCACCGCAAACTGGACTCCACCGTGCC 78796 33 100.0 35 ................................. AGCCCGGATGGCCGACATGTATCGCTCGCGGCCTG 78864 33 100.0 35 ................................. CCAGAAGAGGCGCACCCGCTGATCGACAACCTCCA 78932 33 100.0 32 ................................. CCTACGTTCATGGCCGTCAACAACGGGTCGGC 78997 33 97.0 32 C................................ GATCAGGCTGATACCGCCTACGGTGCAGACGA 79062 33 97.0 33 A................................ GTAGAGCAGTGGGCCACCGCAAACGGCACGTTT 79128 33 97.0 33 T................................ CTTACGGTGCTGCTCCACGTCGGTACGACGAAG 79194 33 97.0 33 A................................ ACCGCCTCAGACCTCTACCAGCTGCGCTGTGCA 79260 33 100.0 35 ................................. CACGTCAGTTCGGGGAGCATGGCGGACAATTGGTA 79328 33 100.0 34 ................................. TCCAAGATGAGGGCTGACGGCACTCTCTCCACAA 79395 33 100.0 34 ................................. ACAATATGTTTCACGACGTATTCCCAAAGACAAC 79462 33 100.0 34 ................................. ATCCACGCCCTGAGCGGATGGTACATGCACGGCG 79529 33 100.0 33 ................................. AGCTGGGAGCAGTGCGTTCGCGCCGTACAAGGG 79595 33 100.0 35 ................................. ACGTCGGACAATACCATCAAGCAACAGGCCAACGA 79663 33 100.0 35 ................................. CGGACGATGCCGCTTGTGCTGCGCTTCCTTGGTCT 79731 33 100.0 33 ................................. ACGCAGGTCAGCCCGATCCTCGACCGCATCCCC 79797 33 97.0 33 ....T............................ AGCTGGGAGCAGTGCGTTCGCGCCGTACAAGGG 79863 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================== ================== 48 33 99.7 34 GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Left flank : CAATACCGATGAGGACAGCCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCATTATGGACGTGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGCAAAATGGCATGGTGCCATAACGATATGGTGTGGGGTATGCTGGGTTGAGCGTTTGAGTGCGCCGTCCGGTATTCAGAGTGTGTTTTCTAGCCAGCAGTATTGTGTGTTCGGCAAGGTGGCCGGTCTTGGAATGGTGTTTGTGCGAAGTGTAAGCGCTCATGATAAGGGACGTCTTTCGCACCTGAAAAACTATCGAAATCCGAATTGTGATTTTCGTGGGGCGTTTTGAAAACTAAATAATGGACATTAAAATGAGACAGAAAGCCAGTTGCTCGTTTTAGACATGTTGTTCGTCGTATCGGCGGTGTTGTTTGATATGCTTAAAGCTAGGCAGCTGGCTTGCGTCTCAAAAAGCGGACAAAAATGTCCAGCTGCACT # Right flank : TCGGTGTCTGCATCGTTCTGGCCGCCGCGTGGATGTTGCTCTCCCTGTTTATGTCCAGTGTTCCCCGCACATGCGGGATTTCACATGTGCGGGACTGCTAGCAACGGAAAACCAGGGTTTTTGTCCGCTCGGGGCGACTTCAACGGTAATACGAGCAGGAACTGCGACTGGGTGTTTCGCATGGGGTCGCTTCTGAAAGCTATGTAAAAGAAATAGTGTATGTGAAAACGGTCGGGTGGGTGCGGATGCACGAGAAATTGGCTAACCTGTCGAATTTCTGTTTTACTTTGGTCGTTCATCTCGTGAGTGGTCGTCAAGCTAGACATATTGTGTCCCATGGGATGCAACATGTCATATGGAAATACATATGACTGGCGAATATCGCCAATGGTTCAGCCGGATAAAGGACCGGAACGCGAAAGCCCGAATCAGCGCGAGACTCCGATTGCGCTTCTAGATGGGGCGGCCGGTGGGTGACCTGCATACGGTTGGTGACGGGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //