Array 1 27475-28632 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADICG010000006.1 Staphylococcus haemolyticus strain GDY8P58P 58P_FDSW202387826-1r_1.clean_(paired)_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 27475 36 100.0 30 .................................... AATTCAATCGTTTATACACAAAAAGTGACC 27541 36 100.0 30 .................................... ATTGCCGGCTCTAAGTAGCCACGTTCTGCA 27607 36 100.0 30 .................................... AGCGAATGCTAAAAGCATAACTACTTCAAA 27673 36 100.0 30 .................................... TGAAACGTAAGCATAAATTATTTAGAAAAG 27739 36 100.0 31 .................................... ATTTGGTCAAAGTCTGTAAAATCACCCGCTT 27806 36 100.0 30 .................................... GTTTACTTAAACAAAGACAACAAGCTATCG 27872 36 100.0 30 .................................... ATGAGGTTGAAGGATATTACAAAGAATTAG 27938 36 100.0 29 .................................... CGTTAGTTGCAGGTATCATCTACCTGTGG 28003 36 100.0 30 .................................... GGTTATCCCATTCAATTACTGCGATTGGTC 28069 36 100.0 30 .................................... AGAAACAGAATGGTTACCAGTACTAGACTT 28135 36 100.0 30 .................................... ATTGAAGGTGGAGAAGCTGGAACATACCTC 28201 36 100.0 30 .................................... GTGCAAACTCATTTTTTTTGATATCACTTT 28267 36 100.0 30 .................................... TTCTTCTCCAGCTTTGATTTGTCTTACCAT 28333 36 100.0 30 .................................... TTGAACTGCATAAACGCTACCAACGTTTTT 28399 36 94.4 30 ...............G..................G. ATGTGATTTACCACTAGAGCCACCTCCATA 28465 36 100.0 30 .................................... ATAAAGGTAAAGTAACAGCTGGTGCGTTTG 28531 36 100.0 30 .................................... AAATCGACAATGTAAGCTATGACGATATAC 28597 36 86.1 0 ........G......G......A...........CG | ========== ====== ====== ====== ==================================== =============================== ================== 18 36 98.9 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Left flank : GATGCAAACATAATTGTATTAACAGGATCATTACATTTTCTATCCGAAGAGTGGAAATACAATAACTATATAAGAGATGGTGAGCAAAAAAACACATCTGAATTTCTGGAAGAATTAGAGTGGAATGCGCCACTTAATTTTGATAAGAGGGAACTAGAAGAAAGTTTGAATCGATTCATTTTAACTTATCAAGATAAATTAGAATTAAATCCTATAATATCTAATTATCAAATAGCACAAATTATGTTATTTAGTGCTATTGACATATATGTTGGCGTTTCATATATGCAACATTGTAATCATAAATTTGAATTGAAAATTAAAAATGAATTACTGCCTAAAAGCATCAATAAATATTTAAACCAACAATCGTTGAATTAATTACTTTGCTATAATTAACATAATAATCTATTATTATCTTAGTGAATGAGTTTAGCTAACTTGTTCACTGAGATACCTTTTTATAAACTAATTCTTTTAGCGATTTTATATTGCTAGAG # Right flank : GTTACATTGATGCTACACCGCAAGATTGAAGTTTTAATACGCTAGTACTTCAGTCACAACTATTTTAAATAGCGATTATTAAGTGCTATTCCTTTCAAATGATTTGATTAAAGTGATTATCTCTATAATTACGCCGATCCATTATTCTTTTCAAATAATCCATAATATTGAGATCAATTATTTGGGGAAGAATGTAGAAATATTTAATATTAATTAAAATAGTAGTTGACTAACATGCTAAGGTGGAAATATAATAAATGTAAGGAACAAGTTTAGCTAACTTGTACTTATACCTAAAATTACAGAATCTACTAAAACAAGACTTTATGTCGTGTTTATCCCATTAATTTATTAATGGGATTTTTTCTTTATAATTAGACAAATCGCCAACGATGATGACTATCGTTGGCGATTATTTTTTCATACTATTGATTACACATTCTCATCTGTAATTTGGCCGAGCCAATAACTGCCGGCAAAACCGACGATTAATGTGATGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //