Array 1 47398-44661 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUHV01000003.1 Collinsella sp. AF08-23 AF08-23.Scaf3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 47397 36 100.0 29 .................................... GCGTATCATGGAGTGCTGCAAGCCCGTGA 47332 36 97.2 29 ...............G.................... TCCCACCGCCTTCTGATGAATAACCGAAA 47267 36 100.0 30 .................................... CAGGGGCCTCACGATAGACAGGGCGATCGT 47201 36 100.0 29 .................................... CCCTGCTTGAGGGCGAACGCCCTGTGCAG 47136 36 97.2 30 ........G........................... CGCCGATTACGTGCCGTGTCGTGACGCAAG 47070 36 100.0 30 .................................... ATTCCGACCTCCTTCAGGTCATTGCCCCTT 47004 36 100.0 31 .................................... TCGACAACTTCCGATTCAACGCGCTCCGATT 46937 36 100.0 30 .................................... GGCAACGTCGACTGCAACGCGATTGTGTCC 46871 36 100.0 30 .................................... CCACGATCACGGTTGACGAAGCCAAGCTTT 46805 36 100.0 30 .................................... TGTGTATTCATCTTGCAACGTCTTGCATAT 46739 36 100.0 29 .................................... ACGCAATGCTGCAGGAAAAGAGTCCCCGG 46674 36 100.0 30 .................................... GACGCGATACAGCTTAGGCCACATGTCTTC 46608 36 100.0 29 .................................... CTTGCGTTGCACAGCGTTGTTAAATTTGA 46543 36 100.0 30 .................................... CCCGACCGCATGCCAGACGCCAGCCGGGTC 46477 36 100.0 30 .................................... CACATCACCGATAACGGGCACCAATGTGCA 46411 36 100.0 30 .................................... GGGCAAAGACGTCGACGGCGTGACATGCGA 46345 36 100.0 30 .................................... ACTTCAAGCGCGATCGCTGCGACCTCACCG 46279 36 100.0 30 .................................... GGAAGCGTGTTGCTTGTCTCGTGGATTTTT 46213 36 100.0 30 .................................... TTATCAGCTGAGGATTCTGTAGCGGTGCCG 46147 36 100.0 30 .................................... GGAGACCATCGACAGCGATTCCGAGGACAT 46081 36 100.0 30 .................................... ATTCGAATTCACAGGCAACGCCGGCGGTGC 46015 36 100.0 30 .................................... CAACGGCGACGCACGCAAGGCGGCTCTCGG 45949 36 100.0 30 .................................... GCCTTGGTCGCGTATCTCGGCGACGAGCGC 45883 36 100.0 30 .................................... CGTGATCTACATCTCCAAGGAGCTCGTCAC 45817 36 100.0 30 .................................... CCAACGTGGCCTCATGGGTCGGTGAGATGG 45751 36 100.0 30 .................................... AGCAGGCCGACCCACTTGAGCACGTCGTAC 45685 36 100.0 30 .................................... AAGGAGGCTTGATGGAACCAGAGATTCACA 45619 36 100.0 30 .................................... ACTAATACCTGGAATGTTGAGACTTCCACT 45553 36 100.0 30 .................................... CGTGAGCGTCGACTACGGCACGCAGAACCC 45487 36 100.0 30 .................................... TAAAGGCATCGACGACAACTTCGTCGATTA 45421 36 100.0 30 .................................... GTGGCCGTCGTAGTTCTCGTCGGCGAGCCA 45355 36 100.0 30 .................................... CCGAGTTCGACGTTCGCACCCTTGACGACT 45289 36 100.0 30 .................................... GCCCTCATTCCACGGAGAATCCTGGTAGCC 45223 36 100.0 29 .................................... GTTGCGGTAGCCCATGCGGCCTTCTCCGT 45158 36 100.0 30 .................................... CCAGGCGTTTTACGAATTGAGCGAGAGCGG 45092 36 100.0 31 .................................... GCACACCACGGACATCCTCGCGGTCTCGACC 45025 36 100.0 30 .................................... CTGCGGTTGCGGCTGCAATTAGGCATTGAC 44959 36 100.0 30 .................................... CAAGGGTTGGGACATGGTGCGCACCGAGTT 44893 36 100.0 30 .................................... GGAGTGCCACGCGGCCTGCAACCCGGCGGG 44827 36 100.0 29 .................................... TAGACGCTGAGCTGCCCGCTCTCGAGGTA 44762 36 100.0 30 .................................... CGACGGGTATACGACCTTTATAGCCTCCAT 44696 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 42 36 99.9 30 GTTGGATTACCAGTCAGAACGACACTGCTCCAAAAC # Left flank : GGTTGCGCGCTTCCCTGCGCGGGACAGGCGGGATTTTTACGCGTTCCCATGCGATGCGGAGAAGGTACGGCATGTGTCGCGCGGCGGGTTCGCGGCATGGTATTTCCGTGCCATCGGCGTTGGCGCGGCATTTCTGCGCCATGGAAAAAAACCGCCCCGTGGGGCGGCCTTCTGTGTGACTTCTGTTGTGGCTATTCGGGTATCTGCTCGATGAGTGCGAGCCATTCGCCAGAAGGGCCGCACACCTCGCGAACCGAGCCGTTTGGAGCCATGAGGAGCAGCGGCATGCACGAGTCGGGGACATCGTCCCCCTCAGCGTCGTAGAACGGCACGTAGAGCGTCCCCTCGTTGACCCGCACGGGGTCGTTCATCGCGATCTTGCACGGGGCGGATTCGCGCAGCTCTCTGAGTTTCGCCGCTATCGCGCTCGGTAGTGTCATTTCATCTCCTCCGCCGCTTCCTTGATGAGGTCGGTGAACTTCTTATCATCGATCCGCATG # Right flank : CATTGAAGCAAATTCCTCCCTGCAAAGAGGACGGACGTCCTGACAATTCGTGTCGTTATATCTCGAGAAAGTGCTGGTCAATACGCATCTTGCTCTCATGACTATAGCTTATATCGCACACCTTATTTTCCAATAGCAATACCTGCATTTCATGGAAAAAGACTCTGTCGAGGAACTGTTCAAACTCGATTTTGCCCAGAAAAGTTTTTAGATTCACAAACACAAGCACCTTCTCGAGCTGCACATCCGAGACAAAATCTAAAAACATATTCAGCATGTCAATGTACGGAAGGTCATCGCCCCTATCTGCCGAAAAACCAAACGATTTCAGATAACGACGCATATCCCATTCTACGTTGAATCGGTAATCGCATTCCACCTGATGCGTCAACCGCTGAGAGAATCCCCTCAAGTGGCTGCCGTAATCCTCAAATAATCTTCGGGCTTCCTCGTCCTCATAGAGAAGCGTCTCCATCATCCCAAGCAGCTTGCCGGAAAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGATTACCAGTCAGAACGACACTGCTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: R [matched GTTGGATTACCAGTCAGAACGACACTGCTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 48606-47978 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUHV01000003.1 Collinsella sp. AF08-23 AF08-23.Scaf3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 48605 36 100.0 30 .................................... GGACATCGTCGAGGCAATCCACCTCATCCA 48539 36 100.0 29 .................................... ATCTCTCAACGCTTCATAGCGGAGACCCT 48474 36 100.0 30 .................................... TCCAAGGACCTGTACCTCCAGTACACCTCC 48408 36 100.0 30 .................................... CGCGGATTACGTGCCGTGTCGTGACGCAAG 48342 36 100.0 29 .................................... ATCCCACGGCGTAGGGTAGTGGTCGATAG 48277 36 100.0 30 .................................... CGGTCTCGTCGCCAAGCTCTGCAAGACCGA 48211 36 100.0 30 .................................... CCCACGTGGGGGACTGCAAGAGCGATAGCG 48145 36 100.0 30 .................................... GAAAGCTTGTCGCTGATTTCCTGAATCTGT 48079 36 100.0 30 .................................... TCTTGCGTTACTACTGTTAGACAAACATCT 48013 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 100.0 30 GTTGGATTACCAGTCAGAACGACACTGCTCCAAAAC # Left flank : CATCGCGCAGAGATCCTCGTAATCCTCGCCCTGCGTGCCGCCATCGAGGTCGAACGGCTCGGCGATGAGCCAGCCGTCGTCCTCGTAGACCTCGAACTCGTATACCGTTGACTTCATGTGTCGCTCCTCTCATGGGGAAGGGGCGGGGCTACCTGAGCCCCGCCTGCCGCTTGATGATCTCGAACATGCGATCCTTGATCTCCCGGTGCCTCGGCACGATGGCCACGCGCCCGTCCGGGTGAACGAACTTCTCGTGGTTCGTGCCGCCGCGCGACTCGAAACCGTGGCGCTCGAGGAACCTCACGACTTCCCTTCTCTTGGTCATCGCTCTCCTTCCTGACGCATTTAATTATAAATACTGTTTAGCTGTTTGGCGGTAGAAATATAAAGAATATTTAGATAAGAGACCACCATAGAAGGTTGCCCTGTCGCGACTCAAGGCCCGTCTAGTCCGGCCATGTGGCGCAGAACGCCATCCTCTCAAGCGCCTTCCGGTTCTT # Right flank : GGGTCGGTCTGCGGGTCGGTCTCCTGCGGTTCGGTCTTGACGTTGCCCTCGTTTGCCATGTCCTTCTCCTTCCTGGGTTTGGTTGCGCGCTTCCCTGCGCGGGACAGGCGGGATTTTTACGCGTTCCCATGCGATGCGGAGAAGGTACGGCATGTGTCGCGCGGCGGGTTCGCGGCATGGTATTTCCGTGCCATCGGCGTTGGCGCGGCATTTCTGCGCCATGGAAAAAAACCGCCCCGTGGGGCGGCCTTCTGTGTGACTTCTGTTGTGGCTATTCGGGTATCTGCTCGATGAGTGCGAGCCATTCGCCAGAAGGGCCGCACACCTCGCGAACCGAGCCGTTTGGAGCCATGAGGAGCAGCGGCATGCACGAGTCGGGGACATCGTCCCCCTCAGCGTCGTAGAACGGCACGTAGAGCGTCCCCTCGTTGACCCGCACGGGGTCGTTCATCGCGATCTTGCACGGGGCGGATTCGCGCAGCTCTCTGAGTTTCGCCGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGATTACCAGTCAGAACGACACTGCTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: R [matched GTTGGATTACCAGTCAGAACGACACTGCTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 49994-49561 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUHV01000003.1 Collinsella sp. AF08-23 AF08-23.Scaf3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 49993 36 97.2 30 ..........................A......... AATGACACGGTTTACCTCCTTCCTGTGGAA 49927 36 100.0 30 .................................... CGACCTGTCGATCGCGACGGACAACTTCAC 49861 36 97.2 30 ................A................... GCAACCCATGACGGTCACGTCCGCGCTCTG 49795 36 100.0 30 .................................... AAGCCGCCAGAGTAGCCCTTGGTGCCCCAT 49729 36 100.0 30 .................................... AATTGGAGCTGATGAGAAAAACAACGAACA 49663 36 100.0 31 .................................... GCGGGGGGCGCGGTGCTCCCCGCCTTTTTCG 49596 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 7 36 99.2 30 GTTGGATTACCAGTCAGAACGACACTGCTCCAAAAC # Left flank : GAGGTCGCAGAGCAACGTGTCGGGCTTCCTCAAGAAGATGGTACGAGAAAAGATGCAAGAGAATATATAGTAGAATACTTGTAACTCCCTTAGATATATAGTAATATATATATCAACAGGGAGGGCAACGGGCCCGCCGAAAGGAGAAGGGTATGGAAGACATGGGAATGAGCGACCTTCAGTTCAAGAGCTTCCTCAAGCAGCTGGTCAAGCGGCTCGAGGACGCGGTCGAGAGCGGGGACGAGGAGATGTCGGAGAAGCTCAGGGACGTCATCCAAGACCTCAAGAGCGACATCGAGAGCTAGGCGAGCGGGCCCCGGGAGACCGGGGCCCTTCGCTTTGCGGGGGACCCGAACGGCATGATTGAGCCCGATGAGAAAGGGGTCGCATCATGGCGTACGCAGGAGAGCGCAGGAGCACGCGCAAGTTCAAGGAGCTGAAGCGGGAGTTCTTCGGCGAGTGTATGAGGACGAGGCCGCCGTGCTGGCTGTGCGGCCAGC # Right flank : CCCTTCGTGGCTGGAATGTGCGCGATCGGCTACGGCCCCGCGTCCCCTTGGCCCCCCTTCATCCTGTCTTGCTTTGGTCGGCGGAAGGGTGGAGGGGCTTTGTGTCCGAATGGAGACGGCTCTGCCTAGGCGCACGCTGCGGCGCGCGGTCGCCCTGCCTCGCGCGGCGCAGCCATGCGTGCGCGCAGGCTGTCGAGCGTGACGTACGAGCTGTGCCCGTCGCGCCAGCCCTCGAGCTGCCCGGATGCGAGCATCTGGGACACGCGGCCGGCGCTCACGCCGAGCATTCGGGCGGCCTCGGCGGCGGTCACGCGCTCCACGGTCTCAAGCCCGGCCATGACGGACACGAGCAGGATGGAGCCGCCGTGGCGCGGCGCGTTGCCGAAGGTCGGCTTGGGCATCTCGACGCCGCGGATGGCGCTGTCCTCGACGGTCACCTTAAGCCAATCGGTGACCATCGCGCAGAGATCCTCGTAATCCTCGCCCTGCGTGCCGCCATC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGATTACCAGTCAGAACGACACTGCTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: R [matched GTTGGATTACCAGTCAGAACGACACTGCTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 51025-50856 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUHV01000003.1 Collinsella sp. AF08-23 AF08-23.Scaf3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 51024 36 77.8 30 .GC.CG.G..GGC....................... AGTATCCCATGTGGATATTGACCTCGGCTC C [51012] 50957 36 97.2 30 ....A............................... GACCGTGGAGATGCCCTCGCGCATCATGCG 50891 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 91.7 30 GTTGGATTACCAGTCAGAACGACACTGCTCCAAAAC # Left flank : CAGTCCCTAAATTGAGGTTTGGCGCAATTACAGCAAGCCGCCTATCTGCGATTCTGCATATCTGCCGAAATGAGATTCTTGATATAGTCCGTTGTGTTGTCTTGCGATTTCAACCACGTATACATCTCTTCATCGGCGTCGCTGTTCGGATAAAACCGAATGGTTAGCTGCTTAACCTTCTTGCGATAATTGTTGGTCGCACGGCGCTGCGCTTCCGTCTGCATTGCCCCCCCTTACGGTTGCGATTTTATACTTACCAGTATGAATCTTGCTCTCCGGACTCATGGCCTTCAAGCTCTCATCGAAGTTGGCCAGTGCTCGTCACCCATGAAGGGTGCGGCGCGCAGACGACGACGCACCCCTTGAGGTCGCGAATCATCGCTGCTGTGCGGCCTGACAACACCCCCTTGGATGACACGCCTTCACTCGGAAGGACCCATGCTGATGACACTGGCACTCAACCGCCCCTTAAGCAACACGGCACTTATGCCAGCATTTGG # Right flank : CTCAGGGTGGCATGGTGCTTCCCGACGGAGGGCGAGCACTCGGACGGCGAGCCGCACACCGCCAAGCCGGACATGGGCAACATGCTCAAGACGCTGGAGGATTGCCTCGTGCGCTCGGGCGTCATCGCCGACGACGCGATCATCTGCGGCGAGCAGCTGTCCAAGGCGTGGAGCGACCCGAGTGGCATCTACGTCGAGGCAAGCGAGCTGTGATATAGTAGGCTATATAAAAGTCATTACGAGGAGGCGGCGATGGCGACGGCAGCGCAGGTGAAGGCGACGACGAAGTACATCAAGGAGAAGCAGACCACCTTCGTGTTCCGCTGCCACAACGAGAAGGACGCGGACATAATCGAGTTCCTGAGGTCGCAGAGCAACGTGTCGGGCTTCCTCAAGAAGATGGTACGAGAAAAGATGCAAGAGAATATATAGTAGAATACTTGTAACTCCCTTAGATATATAGTAATATATATATCAACAGGGAGGGCAACGGGCCCGCC # Questionable array : NO Score: 3.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGATTACCAGTCAGAACGACACTGCTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGGATTACCAGTCAGAACGACACTGCTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //