Array 1 40283-39257 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTVY01000025.1 Bacillus cereus strain AFS011202 AFS011202_109_F7_Contig25_140523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 40282 32 81.2 34 ......T..CT.GC....T............. GTGACGGATATAGAGACAGGTGAAAAAACAAAAA 40216 32 96.9 33 ...................T............ CTTAAAGAATACTATGAAATTGAAAGAAGTACA GT [40198] 40149 32 96.9 35 ...................T............ CAAACAACCGGTGCACCAGGATTTGAAATGAGTAT 40082 32 100.0 34 ................................ CCTTAGGACCTGATTGAAAATATCTAATAATACC 40016 32 96.9 33 .......................A........ TCTGATTTTGTATTTTCTGTACGAAGCTCCGTA 39951 32 100.0 35 ................................ TTTTTCATTAAGAGTATGTGGTTTGAAATATTGAA 39884 32 100.0 35 ................................ CTAATAGAACTTGATACATTTAAAATCTCCCCTTG 39817 32 100.0 35 ................................ ATTTTGGTACAGGATTTGCAGCAGGTATTGGAGAG 39750 32 100.0 34 ................................ AGAGGGCGTTGATTATGTGTAGGAAAGTAATTTT 39684 32 87.5 33 ..........TG..G......A.......... GATAAAGGGTTTGCAATCATAAAAGATATTGTT 39619 32 90.6 36 ...A......G........A............ TCTGAGGGGACACCTTATATGGAAGAACTAAGAGGA 39551 32 93.8 33 ...A...............T............ TATAAAAAAGAAGTATGTTGATTTAGTTAAGCA 39486 32 93.8 35 ...........C....A............... ACAAATGAACGTGTAACAAATGGATTTTTGCTACT 39419 32 93.8 33 ...........C...C................ TATATTGGTCGTACAGTTAAATTAAATCGTCCG 39354 32 90.6 33 ..................AT...A........ CACCCAAATATCGGAAAATTATAGAGTTTTTTA 39289 32 75.0 0 ....T....C.......CA....AG...G.C. | A [39262] ========== ====== ====== ====== ================================ ==================================== ================== 16 32 93.6 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TGATCCGATTGATATTACTAGTATGCAGATTACGAAAAGTGTAAATTCTGAGCCTGGGAAAGATAAAGGTTCAGATACGATGGGGATGAAGCATCGTGTTGATTTTGGAGTCTATGTTTTTTATGGAAGTATTAATACGCAATTAGCAGAAAAGACAGGTTTTACTAACGAAGATGCGGAGAAGATTAAAAATGCACTGGTTACATTGTTTGAAAATGATGCGTCGGCAGCACGCCCTGAAGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGGATCATAATTCAAAACTTGGTCAATACTCTTCTGCAAAAGTACATCGTTTATTAGAGGTTAAACGGAATATTGACGAACCAAAAACAATCGATGATTATACTGTATTGGTACATGAATTAGATGATTTAAAAGTTGAGGTTATTAATGGAATGTAATAAAAAGCGTCAGAATAGTTGAAAGAAAGTATCCTTATAAAGATATACTCTATCAATTTATTAAAGGAAA # Right flank : GGTAAGATGCTTGATATTAATTTAGTGCCTCTGCTGGAGTAAGTGGCACTGCTTCAATTCATACAGCAACTAGTGTTGAACCAATTGACATTACTAGTATGCAGATTACGAAAAGTATAAATTCTGATCCTGAGAAGGATAAAGTTTCAGATACGATGGGGATGAAGCATGGTGTTGATCTTGGAGCTTATATTTTTTATGGAAGTATTCATATGTAATAAGCAAGGAGACAGATTCACCAAAGGTGATGCAGAAAAGATTAAAAATGAACTGGTTACATTGTTTGGAAATGATGGGTCAGCAGCATGCCCTGAGGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGAAACATAATTCAAAAATTGGCCAGTACTCTTCCGCAAAAGTACACCGTTTACTGGATGTTAAGCGGAACATTGACAAACCAAAAATAATTGATGACTATAACATTTTGGTAAATGAATTAGATATTTTAAAAGTGGCGATTATTGATGGACC # Questionable array : NO Score: 8.41 # Score Detail : 1:0, 2:3, 3:3, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [18-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 47385-46565 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTVY01000025.1 Bacillus cereus strain AFS011202 AFS011202_109_F7_Contig25_140523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 47384 32 100.0 34 ................................ AAAAATATGCAGTAAGTAACGAATCTTTATTTTC 47318 32 93.8 34 ...........A........T........... CCACTGGGGACAACGCTGATCCACATGAGCAAAG 47252 32 93.8 34 .........C..........A........... TACCTCGGGTTTATATTTATCTGGAATGCCCATA 47186 32 93.8 33 ........C..C.................... TTTGCAACTAGCTCAATTGTTTTTCCATTTTCA 47121 32 93.8 33 .........C.........T............ ATGCCGATCGGTGTACAAGCGGACTTCATTAAC 47056 32 93.8 33 ......T....A.................... ATAATATCACACTTTTGACAAAATTCAGTCATG 46991 32 93.8 35 A........C...................... AATTAACTGGGGTAAAAACGACATAATCCCATTAA 46924 32 100.0 34 ................................ TCTACTGAAAACTAAGTCATTATCTTCATAAGCT 46858 31 87.5 33 .........C.-.A.....T............ ATGCCAATCGGTGTCCAAGCCGACTTCATTAAC 46794 32 93.8 34 A..........A.................... CCCTGCTGATGCAACATCGCTACCTGCATTTTGT 46728 32 93.8 34 .........C..........A........... GAAAAAACGCTTGATGACTTAATGCGAGATGAAG 46662 32 100.0 34 ................................ ATTGCAGGGAAAACAGGTAGCGGGAAATCATTTC 46596 32 90.6 0 ...........A........AC.......... | ========== ====== ====== ====== ================================ =================================== ================== 13 32 94.5 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TTTCTAGTTATATATTAAAAGGTGAACACAAATAAAGAGAAGAATAATTAAAGTATTTGTGAGTTAGCAAAATAAATGAATTTTTAGTATTCAATATTCTTAAAAATGTTATATCATAAAAAAAGATCGAACGATGATATAAAGAATAAACTTGATAGGTGGATAGAGAGACAATATATAGTGAATTTTATTGTAAATTACGAATCAATATATTAAGGGTATTATGAAACTATACATTTTGGTTATTCAATTAGGTAATAGCTATGAAAATAAGGTCAAACATATTGGTGTAAAAGAATGAATTGATTTAGAAAGCCCTTTAATTTTTTAGGTGCGAATGTATAGCAAACATGAAATTCCTAGTACATTCGCACCTAGAATTCTCATGCTTTATGATGGGGATTTATGATTTTTATGCAAATTACTTTATTAAATAAAAACATTTGTATATTTTTGGATAAAACTAACGTATTTTTGGTTGATTTCGAACACAAATCGGT # Right flank : TAGTAATGCTCTGGCTTTAAATCGCTCTGCAGATGTAGATACTCAACTGGAAGTATCTATATCTGTAGTATCTAACACACATGTTATAAACATAAAATGGAGGGAGATTGAATGACCTACATTGCTCATATACGCGAGAATGACAGTCAAGTACAAACAGTCGAAGAACATTTATTAGGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATTGGTATAAAACATTTAGCTGGTTTAGCTGGTATGCTCCATGATATGGGTAAATACACCAATGAGTTTAAAGAATATATATTGGAAGCAGTAAATAATCCTAATTCTCCACCTAAAAGGGGGAGTGTTGATCATTCAACTGCAGGGGGGAAATTGTTATATCAATTATTCCATACAGAAAATATGATTCCTTACAAAGGGATAATATCTGAGATAGTGGGAAATGCCATTATTTCTCACCACGGATACCTTCAAGATTTTTTAAATCCAGATTTAGAATCGCCTTA # Questionable array : NO Score: 8.35 # Score Detail : 1:0, 2:3, 3:3, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.06%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.30,-1.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [6-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //