Array 1 87755-88187 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFMM01000009.1 Campylobacter jejuni strain isolate_W5 NODE_38_length_105119_cov_141.749756, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 87755 36 100.0 30 .................................... AAAGATTTTTTATATAGTACTGATTTCATT 87821 36 100.0 30 .................................... TTAATAGCTATCCAAGCTTCAAATGAATAG 87887 36 100.0 30 .................................... CTCAGGTTTTGGGGCTTCAAAATCGAAAGG 87953 36 100.0 30 .................................... TCGCCCTTAGTCCATTTAAAACCTAAAGCT 88019 36 100.0 30 .................................... TATTGCGAACTATATTATATTTCCAACCAA 88085 36 100.0 31 .................................... TATTTATAATGAAAAATTTAACACCAACATA 88152 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 7 36 100.0 30 GTTTTAGTCTCTTTTTAAATTTCTTTATGATAAAAT # Left flank : ATAGCAGCGCTAATCCCTGCTTTTTTTATTTTAAGGTATTTAGGCGTAGAAACTTTAATCTTACTTGCTATTTTACTTTTTTTAATCTCTATAAAAATCATCGATCAGTATGAAAAACAAACAGGCAAACACGATGATAAGCATATTGTAATAGATGAGGTTGTTGGGGTGTTTTTAGCTTTGGCAATTTGCGGACAAAGTGTTTTTACTTTTTTACTTTCTTTTGTTTTGTTTAGATTTTTTGATATCACAAAACCATCTATCATAGGTAAAATCGACAAAAAAACCAAAGGCGGTTTAGGTGTAATGCTAGATGATGTTTTAGCAGGAATTTTCGCAGGATTATTTAGTGCTGTGATTTATGGAATTTTACTTAAATTTGATCTTTTATGGTTTGATATAAGCATTATGGAGATATTTTAGCTTCATAAATTTGTGAAGCTATTTTCTAATTTTCTTTAGAGTAAAATAACAATAATTCTAATTGTATTTGCTATACG # Right flank : TTGACTTTTATCAAACAAAGAAAACTAGGTGTTTTTTCTACAGAAAAAAACCTAAAATATGTTATAATTCTTGCTAAAGAAATTTAAAAAGAGACTAAAATAAGTGGTTTTTGGTCATCCACGCAGGGTTACAATCCCTTTAAAACCATTAAAATTCAAATAAACTAGGTTGTATAAACTTGGTTTTTTTCTTTTCTTTGTTTATTTTTTCATTACTATATTTAAAATCTTTACTTTTTTCATCATATTCAAATAAAACTAGATTTTTATCATCATTCATTTTTTCATTAAAAGAAACCCCACCTAATAAAATTTGCATATTATCAAATTGTTTTTCTGTTATGGTTAAAACTCTTATATTTCCATAAGGTGGTAAAATTTTCTCTATCGATTTTATCGTTGTTTTTGCCGAAACCGATCCTTTACAAATTTTCACATACACACTAAATTGCATCATGAAAAATCCAAGCTTTATCAATGAGTTTCTAAATTTATTTGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCTCTTTTTAAATTTCTTTATGATAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.78%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 94001-94561 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFMM01000110.1 Campylobacter jejuni strain isolate_W5 NODE_92_length_111585_cov_118.648979, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 94001 37 100.0 39 ..................................... TTAGTGAGGTAGCTTCTAACCACCTCATCTTTTTCACCA 94077 37 100.0 40 ..................................... TCTCAACGTACCATTACTTATTTTATCTGCATATTTTTGG 94154 37 100.0 36 ..................................... TTTAAATTGGTTACTGCCAATAAACACTGGACTAAA 94227 37 100.0 34 ..................................... TACATTGTAACAGACTATCCAAATATTTTTTTGT 94298 37 100.0 37 ..................................... ATAACAGCTCTTGTATTAGTTACACCCGGTACTCCTA 94372 37 100.0 40 ..................................... TTTTTCATTGTATGGTCTATTATCCTCTCGTTAGACCTTT 94449 37 100.0 38 ..................................... GTAACCTCTTGAATATCTTCTTGGCTTTCTTCATCAGG 94524 37 94.6 0 ................................C.G.. | T [94558] ========== ====== ====== ====== ===================================== ======================================== ================== 8 37 99.3 38 ATAAATACAATATGACCTGATTAAAAGGGATTGAAAC # Left flank : TTTTTTATGCCAAAAATGCATAGAAAAATCCTTTATACTACACCCTAATAAAGACAAAAATGTTTTTACTCCAGATAATGATTTGTTTTTTTAATTTGCGAACTTTTTAAGCATTAAAAGCTTGAATTTAAAAACTATATTTTTAAAATGACTTCGTAATTTTGTGTTTTTATGTATTTTAAAAATACTTTTGCTAACTTTTATAATTTTTTAAGTTTTTACTGCTGAAAATTTAGGCATTTGCAAACTTAAAATTTCCAAAAAATTCACAAAATGTGGTTTTGTAAAATTTCCTAAAAATATTTGCGAACTTTTTTGATATTTAGAAGTATTGAAATATAGCCATTTTAAGCAAAAATTAATCAAAAACATCCTTTTTAAAAATCGTAATTAACCCACATTTGCCAACTTTTTATATACATAACTCAAATGATTATTACACCGGTATTTATAAAAAGATGTTATAATCTCATATCTTTTTAAACATGCAAAATTAAGCT # Right flank : CACAAGCTGTCATTTATTTGTGGTAAATTTTTGTAAAAAATAGGGAGGTTGCATAAAAGTAAATGTAAATTAAAGTAAAATATATAAAATTTAAAAATTTATAACAAAAGGAAAATACATGTTTTTAAATTTACTAACACCAGAAGAAAAAATTTCATTTTTAGAGATAGCACATCATTTAGCTCATAGCGATGGTAGTGTTTCAAATGCTGAGTCTGTAGTTATTAGCGGGTATTGTGCTGAAATGCAAATAGCAAATATAAGCTATGATGATTCTAAATTTGATTTAAGATCGACTTTAAAAAATATCAAATCCTCTCAAAGTCAAAAAATCATTTTGCTAGAAACTATGGCGCTTGCTATGGCTGATGAACTTACGCATTTTGAAGAGCTAGATAAAGAGGAAAAAAGTGTTATCGAAGCTATGCTAGAAGAGTTTGGTTTGTCTAAAAATTTAGCTATTGTGTATGCAGAATGGACTAAGGCTGTATTGTCTTTAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAAATACAATATGACCTGATTAAAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.50,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //