Array 1 19976-20332 **** Predicted by CRISPRDetect 2.4 *** >NZ_FTOD01000021.1 Kroppenstedtia eburnea strain DSM 45196, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 19976 29 100.0 37 ............................. GATAGGTTAGGGTCACGACCGCCGATTCAAACGGCTG 20042 29 100.0 38 ............................. CTTCAGGATGAGGCCAGCAGTATTGATCGCAGTGCTGT 20109 29 100.0 39 ............................. AGAGCATATAGTGGCCGGACGTGTTCGAAACATTGCCTA 20177 27 93.1 35 .............--.............. ATATGCAGGAATAACCCGCACTCCCACCTAACCAC 20239 29 100.0 36 ............................. TTGCGATGTGGCCGGTTTCACCTTTTCAAATGCCCA 20304 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 6 29 98.9 37 CTTTATATCCCACTACGTTCATCTAAAAC # Left flank : CCACCGTTGAGATCATACCGACCTGGATGTGGTATCCCACAGTCATTTTCCACTGCTATTTTTTTAAAGTCATCTGGCAACCTGACACCCAAAAGCTCCTCGGTTTGCGTTACCGCCTTCTCGTTAACAGGACCTTCAGCATATTTCCAAATAATGCCTCCCATAATTAACCACCCCTATTTTCTAAATTCTTTTCTCCGACCCCATATATTCCTACCTCTTGGGACGAAGTCCTGCCTTTACTCCATCTAAAAACGCATCCCTCCATTGGTAGTAAAGCGCCTGCGAGATTTGATGATCCCGGCAAACTTCTGAGATCGATCGATTCTGTTTCAAACCTTCCAGCACAATTGCTACTTTTTCTGCTCCATTGACGACGCTTCATCTTCATCCCTCCATCATTGGCTTTTCTACCATTATGGGGTGCTGGATGTCTCAGTAAACCGGATGTTGCATTTTAAAGGGGCGCTATATCACGGCTCCTTACTTCCGTGATCCAA # Right flank : CGATCTTCCCGGCATCGGGATTGTCCCACTCGTCGTAGATTTTCGTGACGGCCTTTTTCGCTGTTTTACGCGGTGATGGGCTTATTTTCCTTTGGTTCGCTGTCGATGT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTATATCCCACTACGTTCATCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 133-772 **** Predicted by CRISPRDetect 2.4 *** >NZ_FTOD01000018.1 Kroppenstedtia eburnea strain DSM 45196, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================== ================== 133 29 100.0 38 ............................. AAGGGTGGATCAGTCTTCACCGGCAATTACAGGATCAC 200 29 100.0 36 ............................. GCAGGATGAGCTTGTCAAGAAGATCGCGGATGAGTG 265 29 100.0 38 ............................. TTCCATCCATTCCGGCAGGTGTTCCCGACTCTTGATCC 332 29 100.0 37 ............................. CCCAACCGAGTCCGTTCGGATACATTCCCTTTCAGTT 398 29 100.0 46 ............................. ACGTGACTACCGGTGCAGTTGGTGCGACTCCGCTTTTACGGTTTTA 473 29 100.0 38 ............................. AGTGTGAACAGCGTTCCAAAAATTGTGATGACAATCGT 540 29 100.0 38 ............................. TCTGTTCAGGATTTTGCTTACCGATGTCCTGTACTTGC 607 29 100.0 36 ............................. AATCCCCGTTTAGACAATTAAGGACATAGCTTTTCG 672 29 100.0 43 ............................. ATGCCACGGAACCGGCGAATACAACCCGACGGGGCAGTATCTG 744 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================== ================== 10 29 100.0 40 CTTTATATCCCACTACGTTCATCTAAAAC # Left flank : GGCGGTTTCTCCTTCTTGGTTTGTCCACCACCGTTATACCAAACGGTTTAGGAGACCGCCACTTTCAATTTCCACGATTTTTGGGACATAGCCCTAGATGAAGTCGGCAGTAATACCCGCATATCCTTTGTAC # Right flank : CCCCTTAAATCAAAAAGCAATAATCCCAGTCATGACGGGCATTTTCGCTAACTCGTTCCTGGCTTGGAACTCACGATTTGCAGTGAAGTGAAAGTCCTTTTTCTCAAAGCCTGTTGAAGTCCGCTACTATTCCTTATTTGATAAGGGATTTGGCGATTTTCATCTTGTCAGGGGTTTACTGCAGTTTGTCTTTACAAAAACAGATCGTCAAATCCCTTCTCTCGACCGAATACTGTCTTTTTCATGTGATTTTGATTGTTTACTTGATACAGGTAAATAGAGTCATGTTGCGGATGAATAATGTTGTCCAACTCGTGCATGCACTGAGTCAGTTTCCCTTTCCCGATCTGTCCTTCAAATACGGAGTTCTGAGTCCATGTTAAATATTCTCTTAGCTTTTTGCAAACCTTGTACACCCGTTTCTCACCCACATCATACGTGATGATCACATACACGCTTCCATCCTCCTCGCCATCCGGCTCCGCTTCTATATCCCTTCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTATATCCCACTACGTTCATCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 682629-682135 **** Predicted by CRISPRDetect 2.4 *** >NZ_FTOD01000001.1 Kroppenstedtia eburnea strain DSM 45196, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 682628 30 100.0 38 .............................. CAGCCAGGTACTTCTCCCCTCCGGTGGTAGTTTCCAGC 682560 30 100.0 36 .............................. GTCCATCCATCGGAATCTCTTCATATCCCACAAGAT 682494 30 100.0 35 .............................. TCGACCTCCCCGGACTAGATGAAGAGTACCATCTA 682429 30 100.0 37 .............................. TCTGGTTCACCCCATCCCATTTCCAACCCGATTGAAA 682362 30 100.0 36 .............................. TGCGAATGCCCCACAGATACGAAAAGGATGCTGGCT 682296 30 90.0 36 .....GT..............G........ ACCGGCGATGAAGTGTATCAGATTTGGGCGGAGGCC 682230 30 93.3 36 .....G...........G............ AAGCAGTATTTGCTCGGCTCAAACATGACCACCACG 682164 30 83.3 0 ....TG...........G..........CG | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 95.8 36 GTTTATAACGTACCTATAAGGAATTGAAAC # Left flank : TTCAAGCGATCGGCATCGAGGATTTAGCGGAGATCGGATCTGGGATCGAGTCTTGAAAAGCCGATAACCATGAGGGTAAAATGGGTTTAGAACGTACCTATGAGGAATTGAAACACTATTTTGAAAAGTCTTGGCAGGACAGTGCGGGCGTGTTGTCTTGAATCGTGGAGTACCGTTTAGAACGTACCTATAAGGAATTGAACGCCTTGTTTCCTGATCGACCGCATGAACCATAAAGGCTTCCACTACATCGAAATTAACAAAGATCCCCACCTGTTCAACCTGCTGATCTGATCCCGGAATGGCGGGGGTATACCAGAATCATCCAACAAAAAGTCGTCGACCCCCGGTAATGTAAAAACCCCGGGGGATCGACGACATTTGTTATGTGGCGATTGAGATTGATCTATCAAAGGTTCAGACGATCGGCATCGAGGATCCACGGGAAATCGGATCTGGGATCGAGTCTTGAAAAGCCGATAACCATGAGGGTAAAGTGG # Right flank : CCTTGCATCCTGATTGATTGGATAAAGCGAAAAGGCTTCCACTACATCGAAATCAACAAGGATCCCTACCTGTTGAACCTGTTGATCTGATCCCGGAATCGGGGGGATCTGCCGGAATCACCCAACAAAAAGTCGTCGACCCCCGGTCGTGCAAAAATCCCTGGGGATCGACGACTTTGTTATGTGGCGATTGAGGTTGATCTATCAAGGGTTCAAGCGATCGGCATCGAGGATTTAGCGGAGATCGGATCTGGGATCGAGTCTTGAAAAGCCGATAACCATGAGGGTAAAATGGGTTTATAACGTACCTATAAGGAATTGAAACTTCCTCCAATTCTCGATTGGTATAGTATCGGAGGGCTTGTTTATAACGTACCTATAAGGAATTGAAACTGTTCCTCCAGCAACCTTTCAGCAGCCAGTTTCAGCGTGTTTAGAACGTACCTATGAGGAATTGAAACCCCACGATGCCCCACGTTTTGCCGATTCCATATTCTTGA # Questionable array : NO Score: 9.05 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATAACGTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 683856-683340 **** Predicted by CRISPRDetect 2.4 *** >NZ_FTOD01000001.1 Kroppenstedtia eburnea strain DSM 45196, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================================== ================== 683855 30 90.0 54 .....G.G.........G............ TACAATACGCCGAGCAACGCCATGGTCCGGTGGGTGAACGCCAAGACCATCCAA 683771 30 86.7 40 .....G.GT........G............ ATTTGTCCATCCCAGTCTTCGAGCCTTCGGCGTACTTCAT 683701 30 100.0 36 .............................. TCGCTGGTGATCGTCCTCTGAACCTCGACGTATTTC 683635 30 100.0 36 .............................. TGCGAATGCCCCACAGATACGAAAAGGATGCTGGCT 683569 30 90.0 36 .....GT..............G........ ACCGGCGATGAAGTGTATCAGATTTGGGCGGAGGCC 683503 30 96.7 37 .....G........................ CTCTTTGTGATGATTAGCCCAGGCTCCTCCCAGAAAG 683436 29 90.0 38 .....G...........G....-....... TAGACATAGTTGGAAATGTGATCAAACATGGACCGCTG 683369 30 83.3 0 ....TG...........G..........CG | ========== ====== ====== ====== ============================== ====================================================== ================== 8 30 92.1 40 GTTTATAACGTACCTATAAGGAATTGAAAC # Left flank : AAAACAAAATCGGTTTAGAACGTACCTATAAGGAATTGAAACATCCAACCTTCTTCCAAACGGAAAACCCCCTTACAAGTTTAGAACGTACCTATAAGGAATTGAAACTCCCCTTTGCCAATGCCTCCAACAGACCTTTCCCAGGTTTATAACGTACCTATAAGGAATTGAAACACTACATGCTGAGTCACAATCCCGACCGCCGCGTCTGCGTTTAGGGCTTACTTATAAGGAATTGAACGGCTTTCACTACATCAGATCAATTAATCCCCACCTGTTCAACTTACTGATCCGATCCCGGAATCGGGGGAGATCTGCCGGAATCATCCAACAAAAAGTCGTCGACCCCCGGTAATGTAGAAACCCTGGGGGATCGACGACATTTGTTATGTGGCGATTGGGTTTGATCTATCAAGGGTTCAGCGATCGGCATCAAGGATCCAGCGGAAATCGGATCGGGATCAGGTCTTGAAAAGCCGATAACCGTGTGGGTAAAATGG # Right flank : CCTTGCATCCTGATTGATTGGATAAAGCGAAAAGGCTTCCACTACATCGAAATCAACAAGGATCCCTGCCTGTTGAACCTGTTGATCTGATCCCGGAATCGGGGGGATCTGCCGGAATCACCCAACAAAAAGTCGTCGACCCCCGGTCGTGCAAAAATCCCTGGGGATCGACGACTTTGTTATGTGGCGATTGAGGTTGATCTATCAAGGGTTCAAGCGATCGGCATCGAGGATTTAGCGGAGATCGGATCTGGGATCGAGTCTTGAAAAGCCGATAACCATGAGGGTAAAATGGGTTTAGAACGTACCTATGAGGAATTGAAACACTATTTTGAAAAGTCTTGGCAGGACAGTGCGGGCGTGTTGTCTTGAATCGTGGAGTACCGTTTAGAACGTACCTATAAGGAATTGAACGCCTTGTTTCCTGATCGACCGCATGAACCATAAAGGCTTCCACTACATCGAAATTAACAAAGATCCCCACCTGTTCAACCTGCTGA # Questionable array : NO Score: 8.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.60, 5:0, 6:0.25, 7:-0.09, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATAACGTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 3 684815-684114 **** Predicted by CRISPRDetect 2.4 *** >NZ_FTOD01000001.1 Kroppenstedtia eburnea strain DSM 45196, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 684814 30 100.0 41 .............................. CATTTCGGAAGGCAAGTAGTCCCTCGGAGATGATGAGCAGC 684743 30 100.0 35 .............................. TTAAAAGAAGAACGACTTATAAGAGCAATTGAACC 684678 30 100.0 37 .............................. TCCCATCCACTTGAATCTCGCACAGGTACACATCCTG 684611 30 100.0 37 .............................. AACCGTACCCAGGAAAATCGTGACAGACTCTAAAGCC 684544 30 100.0 35 .............................. CCGAATACACCGGGGCCAACGTCAAAGACACCACC 684479 30 96.7 38 .................A............ CGCAAAACGGAACAGAGGGATCAGTGGGCTTGGGTCGG 684411 30 96.7 38 .................A............ TATCGTTGTTGACAAGAACTTCCCGAAAAACAAAATCG 684343 30 96.7 36 .................A............ ATCCAACCTTCTTCCAAACGGAAAACCCCCTTACAA 684277 30 96.7 36 .................A............ TCCCCTTTGCCAATGCCTCCAACAGACCTTTCCCAG 684211 30 93.3 38 .....T...........A............ ACTACATGCTGAGTCACAATCCCGACCGCCGCGTCTGC 684143 30 76.7 0 ......GG.T...T...A..........CG | ========== ====== ====== ====== ============================== ========================================= ================== 11 30 96.1 37 GTTTAGAACGTACCTATGAGGAATTGAAAC # Left flank : GCAGGAGATCAAGGAGCGCTCCCTGATTCACGAGGGATTGAAGCATTACTTCTCCGTTAACTTCCCCCAACGGGCCGGCGCCCTCCGGGAATTCCTCGATGAAGTGCTCGGCCCCGATGACGACATCACCCGCTTTGAATACACCAAGAAAAACAGCAAAGAAAACGGCCCCGCCCTCGTCGGAATCGAATTGAAACGAAAAGAGGACTACGCCCCCCTGATCGACCGCATGAACCGCAAAGGCTTCCACTACATCGAAATCAACAAGGATCCCCACCTGTTCAACCTGCTGATCTGATTCCGGAATCGGGGGAAATTTGCCGGAGTCCAACAAAAGTCGTCGACCCCCGATCATGCAAAAACCCCGGGGGATCGACGACATTTGTTATTTGGGATCAGGGTTGATCTATCAAGGGTTCAGGCGATCGGCATCGAGGATTTAGCGGAGATCGGATCTGGGATCGGGTCTTGAAAAGCCGATAACCATGTGGGTAAAATGG # Right flank : GCTTTCACTACATCAGATCAATTAATCCCCACCTGTTCAACTTACTGATCCGATCCCGGAATCGGGGGAGATCTGCCGGAATCATCCAACAAAAAGTCGTCGACCCCCGGTAATGTAGAAACCCTGGGGGATCGACGACATTTGTTATGTGGCGATTGGGTTTGATCTATCAAGGGTTCAGCGATCGGCATCAAGGATCCAGCGGAAATCGGATCGGGATCAGGTCTTGAAAAGCCGATAACCGTGTGGGTAAAATGGGTTTAGAGCGTACCTATGAGGAATTGAAACTACAATACGCCGAGCAACGCCATGGTCCGGTGGGTGAACGCCAAGACCATCCAAGTTTAGAGTGTACCTATGAGGAATTGAAACATTTGTCCATCCCAGTCTTCGAGCCTTCGGCGTACTTCATGTTTATAACGTACCTATAAGGAATTGAAACTCGCTGGTGATCGTCCTCTGAACCTCGACGTATTTCGTTTATAACGTACCTATAAGGA # Questionable array : NO Score: 8.85 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAACGTACCTATGAGGAATTGAAAC # Alternate repeat : GTTTAGAACGTACCTATAAGGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //