Array 1 51337-49374 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHRP01000032.1 Bifidobacterium longum subsp. longum strain MCC10068 contig0032, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 51336 36 100.0 28 .................................... GGATGTCAATCAGGAACTTGTCCGTGGT 51272 36 100.0 28 .................................... CCTGACCGTCATTGGTAATGGTGGTATC 51208 36 100.0 28 .................................... ACACGTGGCGTTGGAATAATCCGTTAAG 51144 36 100.0 28 .................................... GAGGCCCGCGACCTGATTTCCAGCGGCG 51080 36 100.0 28 .................................... GCCTCATGATGAAGAGTCGCAAATCATC 51016 36 100.0 29 .................................... GTGAGCTTGTCCGTGTCTTTCATCAGTGG 50951 36 100.0 28 .................................... TGTTTACGCTCAAAAAGCACATTAGATT 50887 36 100.0 28 .................................... CCGAGGCCGGTAGGGTTGCGTGTCTGGT 50823 36 100.0 28 .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 50759 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 50695 36 100.0 28 .................................... CGTATTCATCGTGGCCTCTTCGCGGTTT 50631 36 100.0 28 .................................... CGTACATGATGGGGTCCTTGACCTTGTA 50567 36 100.0 28 .................................... TTGGTGGTGTTGGGCGTCCGGCGCAGAA 50503 36 100.0 28 .................................... AGGTCGAGCGCCTCCTGCCATCCGGCCT 50439 36 100.0 28 .................................... ACAGTATTATTGTCCTGATATTCATGTC 50375 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 50310 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 50246 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 50182 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 50117 36 100.0 28 .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 50053 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 49989 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 49924 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 49859 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 49794 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 49730 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 49665 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 49601 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 49537 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 49473 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 49409 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 31 36 99.6 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGTAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : GCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTACGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCAACTGAATATCTTTAAACTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCGGCCAAGCTGCTGCAGCGCGCCGGCTATA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 11022-10586 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHRP01000037.1 Bifidobacterium longum subsp. longum strain MCC10068 contig0037, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================================================== ================== 11021 25 77.8 72 GA....-..-...........G..C.. AGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACGGTCCGA 10924 27 59.3 33 GC.ACG..C.....C...G.A..C.C. ACGGCGGTCATCACGATCGCCACGGTCATCGCG 10864 27 96.3 54 ........................A.. ATCATCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AAG [10858] 10780 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCGCGGTC 10720 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [10673] 10672 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 10615 27 81.5 0 ......A.......C....C.....CG | CC,G [10590,10595] ========== ====== ====== ====== =========================== ======================================================================== ================== 7 27 85.2 41 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : TGTGGCCGCGCTGTTCATTCTGGACTTCGTGTGCATGGCGATTCTGTAACGCTGATTGACAACGGATTAGCCTTTAAGGATTAATCCGCCGCCATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTTGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACTGACAACTAAATGTACATGGCAGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCTCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTGCGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGCTTTAGTCCTCGAACGGATCGAAGTCGC # Right flank : ATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCGATCTTCTCAACCGGGA # Questionable array : NO Score: 4.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.29, 5:0, 6:0.25, 7:-0.92, 8:0.8, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.30,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //