Array 1 361252-362683 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYBN010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 120 A NODE_2_length_541277_cov_47.6479, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 361252 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 361313 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 361374 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 361435 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 361496 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 361557 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 361618 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 361679 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 361740 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 361801 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 361862 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 361923 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 361984 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 362045 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 362106 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 362168 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 362229 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 362290 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 362351 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 362412 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 362473 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 362534 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 362595 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 362656 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 378815-380901 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYBN010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 120 A NODE_2_length_541277_cov_47.6479, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 378815 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 378876 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 378937 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 378998 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 379059 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 379120 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 379181 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 379243 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 379304 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 379365 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 379426 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 379487 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 379548 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 379609 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 379670 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 379731 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 379792 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 379853 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 379914 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 379975 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 380036 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 380097 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 380158 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 380220 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 380323 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 380384 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 380445 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 380506 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 380567 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 380628 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 380689 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 380750 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 380811 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 380872 29 96.6 0 A............................ | A [380898] ========== ====== ====== ====== ============================= ========================================================================== ================== 34 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //