Array 1 823241-823383 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066284.1 Hafnia alvei strain FDAARGOS_1038 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 823241 28 100.0 32 ............................ CGAGTAGCAAATATGCGCCACCCGTTGTTAAT 823301 28 96.4 27 ....................T....... CCGCACCAGTACCAGCACCAACATTAA 823356 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 30 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAGGAACGTTGTTGGCACTGGCTTCGGCGCGCAGTGAATGGCCGATGGTCAGTTCAATGTTCCTGTGCATTTTCGCTGCCATGATGTTGTTCCTGTTCGCTTCTAGACCTTCCAAGAGCAGCCGCGTAGAAACTGTCTGAGTTTGAGTGCTCGTCTCCCCGTCGCTGAAAGAGGCGGGGAGTTCGTCAATGGCTGATGACTACAGGGTGCTCTGAGATACCCGCGGCAACCGTGTATTGACCATATCACACAGCTCTAGCATCAGATACGCTGATGCTTTCAGCCACGCACTTATCTGAACCCAACTCTCCAGCGGGATTTGATCCCCGTTCTCCAGTAGTTTGCCTAGACATGAAAATCCGTGGCACAAAACCCTTTTTTCTCACCCACACGTAACTTATTGATTTTATGTGCGGTGACGAGCTAAAAATAAAAAGGGTCTTTTCACCAGAAATGAGTTACCGGTCTGATTAGCCAAACCTTTTTGCTATTATTCTACA # Right flank : AATATAATCGTGCTAACTATTGTCGTTTTTTGGCGTGAGATTTTCATTTTTTTAACAGAACATCTAACTGAACTAGGTAAAATCCATTGTGAAAAGAAAAAACATTAAAGTTATTTAACATTTTCTGCGTTTTTTATTTTCTATCAAAACAATTAATTAGCTAATTTCATTGATCATGGTTCAGTGATTTATTGTATTTTGTATGTAAATTGAAAAACACGACAAAGTAATTAAAATGAAACAAAAATGGTTGTGGTAATAAAGATAAAAGTATACATATAACCCCAATAACCGATCTCCCTCCATCGTGGTACTTCTAGAGTGAAAAAATGGAGTAGTGCCAACAAGATCGTGCTTTAGGCTGTTTATTCTTCGGTGTTACCGAAATGTAATAAACAAACTCATAACAAAATGACGATTAAGTCATCAAATAGCCGGAATAGTGCGAACTTAGGTTTACGATGTGAGTTTTTTGTGAAAAAATTGTAGTTAGTTTTTAA # Questionable array : NO Score: 5.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.09, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 831770-832699 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066284.1 Hafnia alvei strain FDAARGOS_1038 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 831770 28 100.0 32 ............................ GCATATGCCGAAATGGTATTTGGAGCCGTAAC 831830 28 100.0 32 ............................ ATATAAAGCCAAACCAAATCACTGGCTTTTCC 831890 28 100.0 32 ............................ AACAAGAGCCGTTTTACACCGCTGGAATGGTT 831950 28 100.0 32 ............................ ATAGAATTACCGATCGCTTTATAGCGCGGTCC 832010 28 100.0 32 ............................ GCTAACATTCTCTTTACAGGCAGTAAGAGCTA 832070 28 100.0 32 ............................ AAACATAGATGCTCCTAACCCCGCTATACTTG 832130 28 100.0 32 ............................ AGACAACACTGGGAAGGTAACGCTCGGTAGCT 832190 28 100.0 32 ............................ ATGTCCAATATGAATGCTTGAATGGTTAAGCT 832250 28 96.4 32 ............G............... ACATTTACATGCAAATTCACTTCGATTGAAGT 832310 28 100.0 32 ............................ GGCTACGATGGTTCGCTACAGCTTACACAGCC 832370 28 100.0 32 ............................ ATTCATTGACAAGATCATTCCAGCCGTTAAGG 832430 28 96.4 32 ............G............... CTTGGCTTTGCTAACGCTTCGAGTTCGACGGG 832490 28 100.0 32 ............................ ATGCTTGATAAGATGTTGAGCCAGCGTGATAA 832550 28 96.4 34 ............G............... GAAGACGCTCGGCGGCGTGGAGTATAAGCCATGT 832612 28 92.9 32 TC.......................... TCACATACCGCCAGTTACTCGATAAGCACTCA 832672 28 96.4 0 ....................T....... | ========== ====== ====== ====== ============================ ================================== ================== 16 28 98.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TACACAATGCAGCGACATCCAACGGATCCCTGAGAATGTGATGCATTGCACCGTGAGCCGAGTGCAGGTGAAAAGCAGTGCGGAACGACTGCGGCGCAGATCGGTTAAAAAAGGCTGGCTCACCGAGGAACAGGCGCGGGAGCAAATTCTGGATGCCAACGAGCAGCGCACCTCATTGCCCTTTATTTCGTTGAAAAGCCTATCCACTGGGCAAATGTTCCAGCTGTTTATCCGCCAAGGGAAAGCGCAGCCTCATCCTCAGACGGGAACCTTCAGTAGCTACGGCTTAAGCTCAACCGCCACTGTACCGTGGTTTTAGTTTTGTTGGTTTTCAACGCCCGCCTGAAACCAGTCGGGCGCTTCAGCTAAAACCCTTTTTTATTGCTTGCTCGTAACTTATTGATTTTCAATCATCATGGATGATGCAAAATAAAAAGGGTTTTATAAAGAGTAACGGGCTATTGTTTTGATTTATCGAATCTTTCTACGATTATTCTACA # Right flank : AGTGCTTTCACAAGTTTGTAGCCTAGGCTACAAACTCACGGCCGTTCTTTTACCGCATCCGCAATGATTTAGCCTATCTCAGTCTGCAAAGGCTAATAGCTGGCGCGTGTAGTCTTGAGCTGGATTGGCAAAAACTTCAGCGCAGTTTCCGTGCTCAATCACTTTTCCGTTCCGCATCACCATCACCTGATGGCACAGTGATCGCACCACCTGCAAGTCGTGGCTGATGAACAGGTAGCTGAGCTGGTGGCGTTGCTGAAGCGTTTTCAGCAGCGTTAAAATCTGCGCCTGCACGGAGCGATCGAGCGAAGAGGTCGGTTCGTCCAGTATCAATAACCGAGGTTCAAGAATTAAGGCGCGGGCAATGGCAATACGCTGACGCTGACCGCCGGAAAACTCGGTGGGGTAGCGATAGCGTGTTTCTGGATCGAGCCCAACTTCGTTCATAGCGCTGATTACCCGCTCTTCCCGTTGCTGTTCGTTCAGCTTTTGGTGTACCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //