Array 1 1517715-1517923 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010423.1 Pragia fontium strain 24613 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1517715 28 100.0 32 ............................ TGAGGGGACTATTTGCACGCAATCCATTAGCT 1517775 28 100.0 32 ............................ TGAAAGCCGATATACCCCTTCGGACAAACGCA 1517835 28 100.0 33 ............................ ACAGTAGAGTTAGGGCTAAAGCTCATGCTGCTT 1517896 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================= ================== 4 28 99.1 33 GTTAACAGCCGCACAGGCTGCTTAGAAA # Left flank : TTCTGGATGTGAAATTAGGTAAATATGTGCATCCAGAAAACGGATTGCAACAGTCAATCACAACGCTCGTCACTGGAAAGGGCTTAACTAAGCTACATGAGATGCTACAAGGCGGTGTGTGATGAACCGCTTTATGCTAGGAACGGGCGAACCACCGGATGGAGAGTTAGAAATAACAATCCACGAGTTAATCAACGGCACTTACTTTCAGATAGTTGGAATGCCATTGAGTAGGGCGCTGAAGAAAGTCGCTGCTGGTGAATTTGACGCTTACGGGATGATAGCTGAGAAGATAAAGCAGATCGGCGCATGTGTTTTAGCCGCATAAATCAAGCCCTCTCCGGAGGGTTTTTACTGTCGTATCAGAATAACCCTTTATTTTTCTATGTTTATAACCGATTGTTTTTATAGCATAAAAATAAGCATAAAATAAAAAGGGTATTTTTGGTTTTTGTTAAGTAAAGCTATTTAATTCAAAGTGATATTGAGCTACTGTTCTA # Right flank : ATTCAAACCACCTTCGGGTGGTTTTTTTATTTCCAGTAACAATGACAGGTGATTGATTGCTTTCAGGTAGGTATGATGAAAAAAACACTAACTGGACAATTAAATGAAAAGACTACTGATAATAATTACATGCTTCACCCTAATTACTGGGTGCGTTTACACAAGCAGTTATGAAGTTGGGAAAGCATTTGATGAAGAAAAAGTTAGCCAAATTGTAAAGGGAAAGACTACAGAAGCAGAGTTGCTTTCTATGTTTGGGCAGCCGTTTGCAAAATCAGTAATTAGTGAAACTGATTCAAAGTGGGTCTATAGCCACAGCAAAGGTAGCGCCTCTGCACAAGCTTTTACGATGAAAACAGAATCAAATATGAATATGTCTACTCTTGATATTTTGGTTCGTGATGGGATTGTCGTAAATTATGCATTTACTAGCGGGCCGGTAGCGCCTTATGTTACATCATCAGTAAACTAATAATTAACAAACGCCTACAAACCCCGCA # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACAGCCGCACAGGCTGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTAACAGCCGCACAGGCTGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1690338-1690666 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010423.1 Pragia fontium strain 24613 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 1690338 29 96.6 31 ............................A CTAAGGGTAAGCCAGCGAAACGTAACCGCCG 1690398 29 96.6 31 ............................A CTAAGAAATTAACACGACGTGAACTCATTTT 1690458 29 100.0 31 ............................. TATTGGTCGGGGCTCTGAGTGTCAGATGGTG 1690518 29 100.0 31 ............................. TGATCGTTAAATCTTCGCGTAGCTGTTCTTT 1690578 29 100.0 31 ............................. CAGCTACTCGTCACTGGCAACATTATCGATA 1690638 29 69.0 0 ..................A.TCC.ACCCA | ========== ====== ====== ====== ============================= =============================== ================== 6 29 93.7 31 CTGAACCGCCGTATAGGCGGCTTAGAAAT # Left flank : GTATGCGGCATTTGTGCGTAAACATAGCAAAAGCCCCAGAGATATTGATAGAAAACGTCAATATTTGCTTAAAAAAGCCGGTGGTGAATGGAATGATATGGCCGAGAAAAGCCTGAGTCGTTTTATTGAGAAGTTACGCTGTCAATTGCCGTTTATCCATCTGGTTAGCCATAGTTCTAAACCGGCAGAAGACGGGGGAAAAAATTATTTCCACCTGTTTATCAACAAAGAGACTGGCGAAGTGCAGCAAGGAAAGCTGACGAAATATGGGTTAAGCGATGCGCAACATCGGACAACGGTTCCTATTTTTTGACCGAATAAATTGATGTTCTTTAAAAAAATAGCGTTAACTTAAATAAACCCTTTTTTTAGCGATGTATTTTCGTTTTATATAAAACAATAAGTTACGATGACCGCTGAAAAAAGGGTATTTTGACTTAATTTCGGATAGATGTCTGATATTATCAGGGTTGTAGAGGGATTTATTGGTGAAATTTCTA # Right flank : ACAGTCATAAAACCAGCAACTCTTTTTATCTTTCCTTTATGTAAATCACCGGGTTTTTCGCTACATTGACGACGGCTTTTGGCTTTAATCCCTTATTTATCGTCATCTCAGCATCAGATCGCACCTTGATCCACCGCATTTATTTTCCGTGCTGTTATACTTAATTCATTCACCTGACAGGAAAGTCAGTGTCGGTGTATCAGGATAGATATCAGACTATTTGATTTATTGAGGGAGAGAAAAATGAAGTCGTTCATTCTTAAAAGTATTGGTGCCGCCTGTATTGCGTTAAGTATGGCAGGATGTGCCTCTAATATTTCTTCAGATTCTTATTCTGATCAGCAGGTTGGTCAGGCTAGTCGTACCTTTGCCGGAACTATTGTTAGTTCCCGAGTGGTTAACGTGGAAGGTAACAACGAGGTTGGTGGGCTGGTGGGGTCTGTTGCTGGTGGTGTTGCCGGTTCTGCCATTGGTGGTGGTTTCCGAGCGAATGCGCTAGG # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAACCGCCGTATAGGCGGCTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3822089-3819479 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010423.1 Pragia fontium strain 24613 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 3822088 28 100.0 32 ............................ ATTAGATGAAGCATTGAACACGTCGAGATTAT 3822028 28 100.0 32 ............................ ATCAGCGGAAGTAGCTGTAATCTTCGCCGTAC 3821968 28 100.0 32 ............................ GAAATGAGGATCGGCGGACTTGTTCGCGTTGA 3821908 28 100.0 32 ............................ TTTTCGTGATTGTTCAGCCATTTAATTAATCC 3821848 28 100.0 34 ............................ CCCGTAAGCCGGGGGAACCGCTACCCGGTGCATT 3821786 28 100.0 32 ............................ TGTACATCATATTGCCCCCTTCAGCACATCAA 3821726 28 100.0 32 ............................ TTTTCCCCAATTGTTATATATTTTACTGATTG 3821666 28 100.0 32 ............................ CAAGACTGGGGCAGCGAAAACCCTAACAACGC 3821606 28 100.0 32 ............................ TTTACGCCGCGCCGGGATCTAGTGGTGCGAGT 3821546 28 100.0 32 ............................ ATCCGGCGCGGCGCAATGCGTGTGACCAGATG 3821486 28 100.0 32 ............................ AGCGGGAATGTGCCGGATTCAACTGGCCTCCA 3821426 28 100.0 32 ............................ TGCAATACCCATCACTCCGGCAAGACCGTCCC 3821366 28 100.0 32 ............................ GAGTTGGCCGCTCTCCTCGACGTCAGTTTATC 3821306 28 100.0 32 ............................ AAACGCATCAACTTGACTGACGTTTAATCCGT 3821246 28 100.0 32 ............................ ATTAATATTACGAACAATCGCTATAACGGAAT 3821186 28 100.0 32 ............................ TTTTCTGATACTTCCCACTTCGCCCCAACAGC 3821126 28 100.0 32 ............................ GTCAGGGGTTTCAATCCAACCATTAAAATGAT 3821066 28 100.0 32 ............................ GGTTTCGTCACCATCTTCGGCCAACGCATAAT 3821006 28 100.0 32 ............................ TTATAGTCAGCAGCTTGTGCGACAGTTCTGAC 3820946 28 100.0 32 ............................ TGTCGATAATGTATTTGGCTTAAACTTAGAAC 3820886 28 100.0 32 ............................ AGGCAGATGTGGCGATAAATAACGAATTATAT 3820826 28 100.0 32 ............................ GTTTGAATCCGTCAGGCTTATTCCTAGCGCTT 3820766 28 100.0 32 ............................ TGGCGCGACTTAAGCCAGTTCCGGGTACGGTT 3820706 28 100.0 32 ............................ TTATACTGATGATCCTGAATTACCGTTCAAAA 3820646 28 100.0 32 ............................ TTCCAGAACTGCCGATAGCTTGCAAAACATGC 3820586 28 100.0 32 ............................ TGTTCCGCCCTTTTTGGTAATAGAGCGCGGCG 3820526 28 100.0 32 ............................ GGCAGAAAGCTCAACTTTATTACCTTTGAAGA 3820466 28 100.0 32 ............................ GCAATGAGAACGGGCAGATAGCAAAGACTAAC 3820406 28 100.0 32 ............................ TTACCCATAAAATCCCCACTCAAATCTCCAAG 3820346 28 100.0 32 ............................ TTTTGTTCGCCAAACTCTGCCGGAGGGCAATA 3820286 28 100.0 32 ............................ AGATTACCAGGCTGTTGAAAACCGGATTGACC 3820226 28 100.0 32 ............................ ATCATGAGCAGCTTCTTCTTGGTTACCCTCAA 3820166 28 96.4 32 .........T.................. GTCTCTAGCAGCCACTTTCCAGCGCGCCATGC 3820106 28 96.4 32 .........T.................. AAGCTCGGGAAGCATCTTTTTATCGAACTCTG 3820046 28 96.4 32 .........T.................. TCTTGAGTGGGGCGGCGACTGGAAGACATTAA 3819986 28 96.4 32 .........T.................. CCATCGTCAAAAATGCACCAGGCATATTCATT 3819926 28 100.0 32 ............................ TCCACCGGAACGGCCAAGGCAGATACCCCGGC 3819866 28 100.0 32 ............................ ACAGAGTGGAGAATGTTTAATCGAGCCTTTTG 3819806 28 100.0 32 ............................ AGCCTTACCCGATCGAGGCTAAAGGGTTTGAG 3819746 28 100.0 32 ............................ CGAGCGGTAAGAAAGTCATCATGGCCGAAAAG 3819686 28 100.0 32 ............................ GCTTACATTTAAACGTGGCCATGTACTCACGA 3819626 28 100.0 32 ............................ TCAATTACTCGCCCGGTTGTTTTGTCGTAGAT 3819566 28 100.0 32 ............................ TGGTGGATTTTATCGCGGAGTTGGTGGTACTC 3819506 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 44 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGTCACCTACGTGAGCTTTGTGCGTAAACAGGTGAAATCGCCAGAGCGGATTGAGCGCGATATGCAGCAAAAATCGGCATTGTGGGCAGCTAAATCGGGTAAATCGCTGGCAGAATGCTTAATTGAGCTTGAAAAAAGTAAACCGACCGATCTATGTCGCTTGCCGTTTATTTACTTGCATAGCCAGCAAACCAAGCAGCGCTCGCCAGATAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCATCCGCAAAGTGCATCGTTGGATGGGGTGTTTGATTGTTATGGCTTGAGTGCTAAGGCGAGTGGTAAGCCAGCATTTGCCACCGTGCCGCACTTTTAAACTCAGGTATAAAGGGTAAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATATTATTTAAATACAATGGGTTGCAATGCGCGGTTTTTAACAAGGTAAAAATGCGATTTTTATCCTAACTGCTTGTTGTAACTTATTTTTATTGATTTATTCTATT # Right flank : GGTGTGAAATCAAACTATTCATCATCTACGCAGCATTGCGACAATATGTATCGTTTACAGTTAATCTCGAGAGTATTGGCGGCAAAGAGCCGCCATGCATCAACAATAATTGTTAGGAAGGGAATGTTAAGAAAGGTATTTGTAGTTTGAATCGTCCCCGTACCTCATATCGTACCCATCCCAATTTCTTCTACTTTAAATTATCGGTGATAAGCCTTATTTAATGCGCTCTAGAAGTACACCCGATTCCATATGATGGGTATAAGGGAATTGGTCAAATAACGCCAGTCGACTCACCCGATGAGTTTGGTTGAGGACAGTCAGATTTTCACATAGGGTTTCCGGATTACAGGAAATATAAAGAATTCTTGGGTAATCCTGAACCATGGTGACGGTTTGCGGATCGAGGCCGCTACGCGGTGGATCGACAAAAATGGTTTCGCACTGGTAGCTGGTTAAATCAATGCCTTTTAGTCGATTAAATTCCCTGACACCTTGCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //