Array 1 9843-12049 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDNL01000028.1 Bacillus sp. FDAARGOS_235 strain DE0592 NODE_28_length_34538_cov_63.849253, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 9843 32 93.8 34 .........T...........C.......... TTAATACATTATTTATAATTCAACCAGATGTTTA 9909 32 93.8 33 ...A.................C.......... GCTTCAAACCACCGTAACTTTTGCCTTAGATCT 9974 32 87.5 34 ............G.A..G...C.......... CAGGACAGCAAAGCAATTTATGAATATGTAATTA 10040 32 68.8 34 ....TC...A.A.GA.C....T.TG....... ATTCCAAAAAACAACCATAAAAAGGCTGTAGCAA 10106 32 84.4 34 ....T.........A..G........A...G. ATATAAACGCATTTCCAACTTTCTAATGCATTTG 10172 32 100.0 34 ................................ CGTACTGTATATGCAGCTTATCGTCAAGCTACGC 10238 32 93.8 34 ...................T.T.......... TTCTATAATATAGCGGTTCGTCAACAAATTCCCC 10304 32 84.4 34 ............T.A.....TC.....A.... ATTTGGTTATTGTACCTAACAATATTTGCTGCAA 10370 32 84.4 34 A.T...T..............T.....A.... AAGAAATCATCTAATTTAATTTGAGCATCAGTAT 10436 32 93.8 34 ..............A......T.......... AATCTTGTAAAAGGGTTGAAACGTACTTTCAAAT 10502 32 96.9 34 .....................T.......... ATCTTACCTACATCGTTTGCGTCGGTAGTGGTTC 10568 32 100.0 33 ................................ CTGACGCCCGGTAGTCGGTTAACCCGTTATAAC 10633 32 90.6 34 ..........C.G.A................. CCTAAAAACAATTCCTTATATCCGGTTATGACAA 10699 32 84.4 33 ..A..G......T.A.........G....... ACAATTTTATCAAAATAAGAAAAAACTATTTGA 10764 32 84.4 34 ........C...GCG....T............ GTATCTATGTAGTCCCTCCACAATTAGATTGAAT 10830 31 81.2 34 .........T..G....G.A.-.T........ CAGTGTTGCTACGCTTAGTGGACATCCCTAGATT 10895 32 71.9 34 C..TT.A...G.GC...C.T............ TTCGAGGCTGATCTTAGAAAAACGCTCCGGCCAC 10961 32 93.8 34 .............AA................. ATGGATAACTCTGTATAAAGATGCTTAACAAAAA 11027 32 87.5 34 ...A........G.G..G.............. AGGTGAGTATCTCACGTTCCAACAAGTTAAGGAG 11093 32 87.5 34 .....G......G.A....T............ GATGTATTTACGTATCAGGAGTTAACGGACCATT 11159 32 96.9 33 ..............A................. CGAACAGCTCCTTTTATCTATTATGAAATCGGT 11224 32 90.6 34 .........T....A......T.......... TTTACTCTGTTGTGTTCACTTTGATAGGGATATA 11290 32 87.5 35 .........T..G.A......T.......... CACTTGTGTTATAATCCCGTTTTCATCCGAATCAG 11357 32 90.6 34 .........T..G........T.......... GAAATAGTGCCAATGAGTAAAAATATGATTGGTC 11423 32 90.6 34 .........T..G........T.......... TTGATTCCACTGAATCAAGCCAGTGCGGAGGTAA 11489 32 90.6 34 ............G.A......T.......... AAGAAAGAGTAGGCAAGTACACTTTAGATTTTTC 11555 32 87.5 34 .........G..G.A......T.......... ACTATGCCTTTACCCGTAATTATGGACAAAATCC 11621 32 90.6 33 ..T.................AT.......... CATAATGGTAAAGTTTTAGGTTATGACCGTTTT 11686 32 84.4 33 .........A.A.GA......T.......... ACTCCTCATTACTTATAAGCCGACAGGTAAACA 11751 31 81.2 34 ....T....T..G....-.....A...T.... CAGTGCTGCTACACTCAGTGGGAATCTCTAGATT 11816 32 75.0 34 C..T..A.....GC...C...T..G....... ATATCTTTTGCAACTCCTTACCAAAGCTTAAAAA 11882 32 90.6 35 ...................T.T.....T.... CTTTCAATTTCGCAATTGTATTGTTTTGCGATCTG 11949 32 81.2 34 ...A........G.A....T..CA........ ATAGTAATAGCTATAAGTTGCTGATATACTATCC TTG [11974] 12018 32 71.9 0 .GGA........G.A...C.AT.........C | ========== ====== ====== ====== ================================ =================================== ================== 34 32 87.4 34 GTCGCACCTCTTATTGGTGCGGGGATTGAAAT # Left flank : TGATCCGATTGATATTACTAGTATGCAAATTACGAAAAGTGTAAATTCTGAGCCTGGGAAGGATAAAGGTTCAGATACGATGGGGATGAAGCATCGTGTTGATTTTGGAGTCTATGTTTTTTATGGCAGTATTAATACACAATTAGCAGAAAAGACAGGCTTTACTAACGAGGATGCGGAAAAAATTAAAAATGCACTTGTTACATTGTTTGAAAATGATGCTTCAGCGGCACGTCCTGAAGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGGAGCATAATTCAAAGCTTGGCCAGTACTCGTCCGCAAAAGTACACCGTTTACTGGATATTAAACGGAACATTGATGAACCTAAAACAATTGATGACTATACCATCTTGATACATGAATTAGACGGTTTAAGAGTTGCAATTATTGATGGACTATAATGAAAAGCATTAGAATAGTTGAAAGAAAGTATACTTATAAAGAACTACTCTATCAATTTATTAAAGGAAA # Right flank : CCATTTTGAGCTACCTACTGCTTAATATATAACATTTCATATTTCGACTCTTATCCTTCTCCTGCTCATCTTTCGAATTTTCTCGACGTTTATTCAAATGAAAATAAAAAAGCTGAATCCCTTCTCACAGAAGAGGTTTCAGCTTTTAGTTTTTTAATCATACCCTTTGCAACAAGGTGCAATTATATTTCAGTGTATCCGCACCTTGTAGCTATTATTATGTATGCTATATTCCACAAAATAATTACAAAAACTCTATTATTCTCTCCATCTATTTTTATTGTATGCACCAACGGGAAGACATATGCACCATCCTCGGTGAATGTGTATAAATTACATTGAAAGTGTCAAAAATAACAGTTAAATAGGATTAAAGAAAGGAAGGCACTTTCATGAAAGGAAAAAAGAAAAATCGTACAAAGCTTGGAAAATGGTTAGATCAAAATGGAATAGAACAACAGGAATTAGAAAATGCAACTGGTGTTAGTCGTAATACAATT # Questionable array : NO Score: 7.72 # Score Detail : 1:0, 2:3, 3:3, 4:0.37, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.09, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCTTATTGGTGCGGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.90,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [38-57] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //