Array 1 13503-15870 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFQA010000045.1 Pseudomonas aeruginosa strain S1 NODE_45_length_35734_cov_68.4029, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 13503 28 100.0 32 ............................ TCCTCGGATGGCGCACGGTCTGTGCTGTCGAG 13563 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 13623 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 13683 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 13743 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 13803 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 13863 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 13923 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 13983 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 14043 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 14103 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 14163 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 14223 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 14283 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 14343 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 14403 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 14463 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 14523 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 14583 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 14643 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 14703 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 14763 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 14823 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 14883 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 14943 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 15003 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 15063 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 15123 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 15183 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 15243 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 15303 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 15363 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 15423 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 15483 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 15543 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 15603 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 15663 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 15723 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 15783 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 15843 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 40 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 25743-24395 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFQA010000045.1 Pseudomonas aeruginosa strain S1 NODE_45_length_35734_cov_68.4029, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 25742 28 100.0 32 ............................ TTGAACATGCCAAGGAACCATTCAAAGATTCG 25682 28 100.0 32 ............................ ATCCTGGGCGCGGGTGTCGCGTTTCGGCTGCT 25622 28 100.0 32 ............................ AGGAACTGCGGAACCGGAAGCGCATTGATCAA 25562 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 25502 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 25442 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 25382 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 25322 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 25262 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 25202 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 25142 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 25082 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 25022 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 24962 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 24902 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 24842 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 24782 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 24722 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 24662 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 24602 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 24542 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 24482 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 24422 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 23 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //