Array 1 155429-157644 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIJP01000001.1 Streptococcus mitis strain SM10 NODE_1_length_224568_cov_20.472235, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 155429 36 100.0 30 .................................... TGCGAGCAAGTACGCTAGCTTTATCCATGT 155495 36 100.0 30 .................................... CTTGTCCCACATAATTTCTAACTGCACGTA 155561 36 100.0 30 .................................... ATACTCTGACCCTTTCAAGTCTACCCATGT 155627 36 100.0 30 .................................... TATTTTCTTCTAAATAGCGACATAGGTTGT 155693 36 100.0 30 .................................... TTGTAAAGCGTCAACTAGGAATGATTGAAG 155759 36 100.0 30 .................................... TTCTTACGCATTTTCACTACTGCGCACCAT 155825 36 100.0 30 .................................... ATTTCTTATTCAAGAGTAGGCAAGGTCAGA 155891 36 100.0 30 .................................... TATTGCCACCATCTGATACCGTCCATACTT 155957 36 100.0 30 .................................... AAACCATATTGTCTATATAGTAACCTGTTA 156023 36 100.0 30 .................................... AGACTGAGACAACTGTGTCAATTTCTCCAA 156089 36 100.0 30 .................................... TAGACGCAGGTAAAGAACTACTAGAAGAAT 156155 36 100.0 30 .................................... TGTATATCGGTAAACTCACAGAAGTTACTA 156221 36 100.0 30 .................................... TAAACGGTGTGGTTGCATTCCAGGTTGTCA 156287 36 100.0 30 .................................... ATGAAAGTCAAAATCAAGGGTTACAAACCT 156353 36 100.0 30 .................................... CTCGGTTACCGATTGCGTTCCTATGGTTCG 156419 36 100.0 30 .................................... AGAATCCACTTTCTTTTTCTTCCTCTGTCT 156485 36 100.0 30 .................................... CAGGTGTAAGAATATGGAACTATTCAGCCA 156551 36 100.0 30 .................................... TCAAACCAATAACAGACAACTTTCCAAAAT 156617 36 100.0 30 .................................... TGATGGGCGTTCTTGGTGAAACTGAATCTG 156683 36 100.0 30 .................................... GATTAAACGATATCATGAGACAGACCGTCT 156749 36 100.0 30 .................................... AGCAGGTAATAAAGCACAAGAAAAAGCTTT 156815 36 100.0 30 .................................... CATCAATGAATTTCATCAATTTTTCTGGAT 156881 36 100.0 30 .................................... GTTGATGTTGAGACTGGTGAGAAAATCACA 156947 36 100.0 30 .................................... TATTGATGGTTAAGCCAGGCTATTTCAGGT 157013 36 100.0 30 .................................... GTCGATATCTAGTACAAGGCTATCAGAATG 157079 36 100.0 32 .................................... AAAAAAACGAACGAGACTCGCTTCCTATCAGG 157147 36 100.0 30 .................................... AGCGTTTGAGCTGACTCGCTTTGACCACCA 157213 36 100.0 30 .................................... AGTATTTCTTTTTTTACTTCCTCTTGCTTA 157279 36 100.0 30 .................................... CTTGAGCAACAACAAAGCACCATCACGAAG 157345 36 100.0 30 .................................... AGAGCAAGGAAGCGGACGACTGGTTTAACA 157411 36 100.0 30 .................................... TTCATGGATTTGTTAAATACGCAGCTCTTC 157477 36 100.0 30 .................................... TATTCTTCAATGAATTTGATAAAAATATCC 157543 36 100.0 30 .................................... TCTACGTCTCCACCGAACCAAGCGAAATGA 157609 36 94.4 0 ..................................TT | ========== ====== ====== ====== ==================================== ================================ ================== 34 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GGATGATTTTTTATCCTATAATGATTTTGTTGAATGTTGCGAGAAAATGGAGTTTCTTACTAATCATAGTAACTCATTATATATTGTGTTGTTTCCTTCAAATGAAGGTTATCTTCATGTCACGAAAGAAGTTTTAGAGGAAATCAATATTGTTTCCGATTATGTTGATCATTTTTATTCTCTAGAATTTATGTATGATCGCTTTACCAATCAGTATCCAATAAATCAAATACCTAATGAGAAAGAATTTTTAATCTCTTTGAGAAAGATTGGACCGTATTTATTTAGTTCAGAAATTCTCCATATGAGTTTATCTATAGAGGATCAAGTAGCATTAAAGATTTTAAACAAATTATATCAGTATGAAATGAAAACAAAATTTCATATTGAATCAATCAATCCAATGTTATTGAAATATTTGAAAGAATGGTATTGACGAGTTGGATTTAAGATTTTATAATGGTTTTGAGGGAACAAAAATCAAAATTGACTAATTTGAG # Right flank : TTAGATAATATTAGCGATTCTCTAACTTATAAAAAACCGCTCGGCTGAGCGGTTTTCGTCTATTCTATTATATTCTTTTCTTTTACAGTACCCATGTACGGATAGCATGGGCTACGCCGGATTCATCGTTAGATTTAGTGATGTATTTGGCGATTTTTTTGATTTCTGGATTTCCATTTTCCATGACCACGGGGTTACCAACGACTTCCAGCATGGCACGGTCATTTTCTTCGTCACCGATAGCCATGGTTTGATCTTTGGTCAATCCTAGTTTTTCAGCTAAGTGAGTGATGGATGAACCCTTGTCAACATTCTTTTTAAGGAGTTCGAGGTAGAAAGGAGCAGACTTGTTGATAGAGTAGCGCTCGTAAAATTCTGCTGGTATCTTTTCAATCGCAGCATCAAGAATCTCAGGTTCATCGATGAACATACACTTGACGATTTCTTTGTCAGCCATTTCTTCAGGAGTGCGGTAGAAAATCGGCATGCTGACGAGGGTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 34598-35737 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIJP01000016.1 Streptococcus mitis strain SM10 NODE_16_length_42534_cov_22.365954, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================== ================== 34598 35 100.0 30 ................................... AATTGACAAAGGTTTACAAACATCACTCTG 34663 35 100.0 30 ................................... TATGTCCTAGATAGACCAATCCTCCAGCTA 34728 35 100.0 30 ................................... CAATCGCAAAAGGAATCAAAACAAGTTCGA 34793 35 97.1 30 ..........................T........ ATAACTTACCAGAATTGGCTCCTGAGTTGA 34858 35 100.0 30 ................................... CTCAGTTACATCTAAATGAATATTGTTGCT 34923 35 100.0 30 ................................... CCTAAGCGCTACAAGGGAAAACCCAAGGAG 34988 35 100.0 30 ................................... ATAGCCTCAAGATAAACAAAATGTCTGGCG 35053 35 100.0 30 ................................... AAGTTGCAGGAAAGGCTGCACAATTAGCAG 35118 35 100.0 30 ................................... TAGATTTTACATTCCCTAACTCATCCAAAT 35183 35 100.0 30 ................................... AATGACCCAATTATTTTGGCGAAAAATCGT 35248 35 100.0 30 ................................... ATGGAGAAGACAAACTTGTAGAAGTACCAA 35313 35 100.0 30 ................................... CAAAGGAGCTGATTTTTTATTAAAATATTG 35378 35 100.0 30 ................................... CACATTCTTCAAACCGTGCAATGATAAAAT 35443 35 100.0 30 ................................... TCGAACTTAGACGAGCTCACCAGGCTAACG 35508 35 100.0 30 ................................... CAGCAACTACTTCTGCAGCAACGCCAACCG 35573 35 100.0 30 ................................... GGATTGAGTAGGGAAGCGTTTTGTGGAGAT 35638 35 100.0 30 ................................... TTTCCAAAATTTTTGATAACTAGATATTTA 35703 35 97.1 0 ..........................T........ | ========== ====== ====== ====== =================================== ============================== ================== 18 35 99.7 30 GTTTTTGTAGTCTCCAAAATTGTGACCGATAAAAC # Left flank : GATTAAACCAAGCAATCCAACCATCCATTCTTCAGGTACGAAATTAACGACATAAGCAGCAACTAAACTCGCCCCTACAAGTAAGCCTGTGCCTAGATATTGCCCCGCATAAATATGCCATTTCTGTTTATTCTGTGATAGCTGTGCAAATAAAATAATTAAAATAACTAAATAATCGATACTGGTGGAAATATAAACACCAATAGCAGATATGATTGTCTGTCCCATAAAAACCTCCTGTATTAGTCAGTAATAAATCAGCAGATTTTAGGAGAGCACAGACACATTAATTTAGCTATCGCTAGTGGGTAATTTCGAACATAGGAAAGCATGTTACTCCTCCTCAAAACGTAGTTACAAAGTAATTTCTAACTGGAATTCGGTGACTACTTCCATGTAAAGTATAACATACTATACTTTACTTCGTAAAGTGTGGGCTCTTCGAGGGGCTTGCAGACAGCTACTCGGCTTTATGGTGTAATTAGCTGATACCATTTGAG # Right flank : CCTCAATAAAAAAGCTCTCTGAAAATCAGAGAGCTGATTTGAGCTCGGACTAAAATCCTAGTGAAAAAGATGAAACTCCTTGTGTTCATCGAACACTGTGTCCTTTCCCTATTTTCATACGGATTTCTTACGCCCTTAGCATCATGATTCTTGCTGGATAAACCGTTTATAGACTAGGCGACGAGGCGAAGATTGTACGAAAATTTCAGTGAAACAAAAAAATCTCCCCAAAGGGAGATCATTCTGGTTTATTTTACCTTACAGTGCTAGGAACCGTAACCGAAGATAATACTTGAGTATATCGAGGTAAGGTGACAACGCAATGTAAGTGGAAAATAAAGCAGATTAACGACGAAGTCCTAGAGAGTTGATCAACTCACGGTAACGGTTAACGTCGTTTTTACGCAAGTATGCAAGCAAGTTACGACGGCGACCGATTTTTTTCATCAATCCACGGTAAGTAGCGTGGTCTTTTTTGTGTTGTTTGATGTGTTCGTTAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTAGTCTCCAAAATTGTGACCGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //