Array 1 1116-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXN010000003.1 Erwinia amylovora strain 1619 Ea_1619_contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1115 29 100.0 32 ............................. CCAGATGTGGACCTGAACTCTGGTAGTCACCA 1054 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 993 29 100.0 32 ............................. CCAGTTAGGATGTCTCTTTCATGATTTATATA 932 29 100.0 32 ............................. CCCGAGCCCATGTGCTAGTGCCGGTAAGAAAA 871 29 100.0 32 ............................. GCGTCCTGGCCATCGAGTGCGTATATCCATGT 810 29 100.0 32 ............................. CAACCAGTTTCGTTAGTTGTTTCTGGGATTAA 749 29 100.0 32 ............................. GTTGAAAATTGACCATTACAAGAAATTTAAAA 688 29 96.6 32 ............................C TTTTACGAATATGTCTTGTATCCCGGCTCTGG 627 29 100.0 32 ............................. GGAAAAATTATCGAGCTGGCAAATAATAAAGG 566 29 100.0 32 ............................. GATAATGCGGAGTTTTCGGGCACGCTAGAGGC 505 29 100.0 32 ............................. GTGCAGAGATGCCGATATTGACAGATCCAATT 444 29 100.0 32 ............................. CGCGATTGAAAGGGCTGTGGTTTATCGTGATG 383 29 100.0 32 ............................. TTCCCATACCTTCACGGCCCGACACTTTGCGA 322 29 100.0 32 ............................. CGCTTAATCAGCTCAACGCAGCGAAGGACGCT 261 29 100.0 32 ............................. TCGCGGCAAAGCGCCTTTTGCCGCTGTATGGC 200 29 100.0 32 ............................. GTGTTCTTCATCTGTATCCACTTCACCCACGC 139 29 100.0 32 ............................. CAGGGTGTGTGGCTCACGCGCTTTCATCACGT 78 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCGGCCTTATTCGGGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCATAACGCTTCTTTTCTTTGGTTCTTCTGTCAGTGTTCCCCGCGTGAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19221-18892 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXN010000036.1 Erwinia amylovora strain 1619 Ea_1619_contig_36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19220 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 19160 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 19100 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 19040 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 18980 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 18919 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : GGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCAA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 31704-28684 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXN010000036.1 Erwinia amylovora strain 1619 Ea_1619_contig_36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 31703 29 100.0 32 ............................. GCGGCGAAGAGACCGGAGCATGGGCTGTTGAA 31642 29 100.0 32 ............................. CCCATTTCCCTGATTTTCCTGGGATTATTTCT 31581 29 100.0 32 ............................. CGGGCATTAGCGGCTTTGAAACGAGAACTGGA 31520 29 100.0 32 ............................. CACGATCACACTGTCAGCTAGATTTTATGATG 31459 29 100.0 32 ............................. AATATCTAGTGTTTATGCGTGCCTTTTCTGGC 31398 29 100.0 32 ............................. CAACTGAGCAACTCCGCTTTGCCCCATACCAA 31337 29 100.0 32 ............................. CCATTCCCGAGCCATCGTCGCGACATCCAGGC 31276 29 100.0 32 ............................. AAAGAAACTACCCCCAACCCCCTAACGGGTGT 31215 29 100.0 32 ............................. CGACTATTCGGCGAACTGAAAGAGCCAACCGT 31154 29 100.0 32 ............................. ACGCCGCCATTCGGATCCGGGGAGGATTCGGA 31093 29 100.0 32 ............................. AATGCCTCATACCTGGCGGCCAGCCTTCAGCG 31032 29 100.0 32 ............................. TACCGCCAGTGGGCCATTGCATCCGGCATGGC 30971 29 100.0 32 ............................. TAACTACGTCAGCGGTGTCCAGCATGACGGAA 30910 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 30849 29 100.0 32 ............................. GAGAGCAACAACAAACTCCGACCGGAGAAACC 30788 29 100.0 32 ............................. TACACTGCAGGCAGTACGGGAATGGTTAACCC 30727 29 100.0 32 ............................. GTTTCGGCGAGCGCGTATATGGTCACGTTCAC 30666 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 30605 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 30543 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 30482 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 30421 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 30360 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 30299 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTGGGTGATT 30238 29 100.0 32 ............................. ATGGCCCGCTAAATGTTGACATGTCTGGTCGG 30177 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 30116 28 96.6 32 ......................-...... GCTACTACGTGTACGCACAGCCGCTGGCCAGT 30056 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 29995 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 29934 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 29873 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 29812 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 29750 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 29689 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 29628 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 29567 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 29506 29 100.0 32 ............................. CGCGAGTACCCATCCATCCCCGCAGAGGCATT 29445 29 100.0 32 ............................. GCAGGGCCGGTTTACGTTGCGCAATCGGAGAT 29384 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 29323 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 29261 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 29200 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 29139 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 29078 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 29017 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 28956 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 28895 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 28834 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 28773 29 96.6 32 .........A................... ATGATGGAGCTGATAGTTTTATTAGATGTCGA 28712 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 50 29 99.4 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : ATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 45446-45051 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXN010000036.1 Erwinia amylovora strain 1619 Ea_1619_contig_36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 45445 29 100.0 32 ............................. GTGTTCCGCCTGGCTGGGAGAATGTGGATGGC 45384 29 100.0 32 ............................. CTGAAAATGAGTGGTGGGCAGCCGGGAGTTAG 45323 29 100.0 32 ............................. AACTTACGGTGGCCTGGCTTGAACTTCCGGAC 45262 29 100.0 32 ............................. CCGGGCGAATGCGGGGATTGCAGGGGCAATGG 45201 29 100.0 32 ............................. GTATTTATAAACGATTCATTAATACGCTTATA 45140 29 100.0 32 ............................. CAGCAACCGGTGGTATTTTTCCGGGTCGGTTA 45079 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TGAGCGGGGATAAACCGCGAACCTATGCGGCATTAGCGGATGCCGCCG # Right flank : ATTACTGGTAGTAACTCAGCAGTATTCGGTACGTGTTCCCCGCGTGAGCGNNGAGCGGGGATAAACCGGGCACCGCCAATCTTCTGGCCCCAGTGATTATGTGTTCCCCGCGTGAGCGGGGATAAACCGGAGATAGCTAACATACTTAACTTATCGCCTAAGTGTTCCCCGCGTGAGCGGGGATAAACCGGTGATAAGCGTACCCTGCAGACGGCAAATAACGTGTTCCCCGCGTGAGCGGGGATAAACCGCCAGCTCCAGTGCTACCGCAACGCCAGATTCAGTGTTCCCCGCGTGAGCGGGGATAAACCGAGTAATTAATGATTCTGAAATCTCTCTTAATAGTGTTCCCCGCGTGAGCGGGGATAAACCGTTTGGTGACAAAGGATGGGTGCGCGAGGAAATGTGTTCCCCGCGTGAGCGGGGATAAACCGAACGTAATCAGTGGGCTGATATGCACGGTCTGGTGTTCCCCGCGTGAGCGGGGATAAACCGCCGCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //