Array 1 142605-138776 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLPH010000002.1 Cellulomonas hominis strain N95 No95_ctg002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================= ================== 142604 29 96.6 32 ............................G TCGATGCTCCGGAACTCGGCCTCGGTGTCGAA 142543 29 100.0 32 ............................. TGGTTGCCGGTGAACTTCGCGCTCTCCGGGGT 142482 29 100.0 32 ............................. ACGATGTCCTCGGTGCCGAGCCCGCGCTCGGA 142421 29 100.0 32 ............................. GAGTGCAGCGCGATGACGCCGATCGCCATGGC 142360 29 100.0 32 ............................. CGCACGAGAGGGCACCCGATGAGCGACCTGGC 142299 29 100.0 32 ............................. TTCTTCCTCGGGCTGGTCGCCACGCTCATCGA 142238 29 100.0 32 ............................. GTCCGCACGCAGTGGTCAGCGTACGCGGCGCC 142177 29 100.0 32 ............................. AGCCACGGTCGATGGCCCTCCGCGTCGAGCTG 142116 29 100.0 32 ............................. TCCTCGTCGAGCCGCCGGAGGTTGTCGACGGC 142055 29 96.6 32 ............................G GAATGCGATGCCGCTGTCGATCACGTCAGTCA 141994 29 96.6 32 ............................G CGATGACGTTCCGCAACCCGGTCACCTCGCTC 141933 29 100.0 32 ............................. GTCCCGGCCTCCAGCCGGCGCCACGACGGCGC 141872 29 100.0 32 ............................. GGCAGGAGATCGCGAGCAGCGGACAGCACGTC 141811 29 100.0 32 ............................. AGGACGGAGCGGGTGCCGGCTACGTGGCCGGA 141750 29 100.0 32 ............................. GGGACGAGGCTCGTGCCGAAGTCATCCGGCTG 141689 29 96.6 32 ............................G CCGAGCTCGGTCTCGACGGCGGGGGTGCTCAT 141628 29 96.6 32 ............................G GACCCGACCGAGACGCTGCGCACGTACGCGCA 141567 29 100.0 32 ............................. GACACGGACAGGCAGCAGAAGCTCGTCGACAT 141506 29 96.6 32 ............................G CCCACGCCGTCGATGAACTCGGTCGTCCAGCA 141445 29 96.6 31 ..........T.................. GTCGCCGAGGCAGCCTCGCTTGCGGTGTTCC 141385 29 96.6 32 ............................G GAGGAAGCGATGACCGAGAACCTCGCCGCGGC 141324 29 100.0 32 ............................. ACGTTCTCCTTGGTCTCCGGGGTCTCGGGCAT 141263 29 100.0 32 ............................. GGCGCCGCCGCGGCGGTGCAGGTCGCGCTCCG 141202 29 96.6 32 ............................G TCACGCGCGGTGCCATCCGTGCGAACGATGAC 141141 29 100.0 32 ............................. GCACCGCGCCAGCCGCAGGACGCGCACACCGG 141080 29 100.0 24 ............................. GCCCTGCCACTCACGCCCCGCGAG Deletion [141028] 141027 29 89.7 32 ....C.C.G.................... TGGGCGACAGCCAGGGCCATGGTGATCAGGGG T [141018] 140965 29 100.0 32 ............................. TCCTTGCCCGGATCGCCGAAGACCTCGGCGTC 140904 29 100.0 32 ............................. GCGTCCTCTAGGGCGCACAGCGTGCCCTTGTA 140843 29 96.6 32 ............................G GAGCCGCGAACGGCGCGCGACGCCATGCGGAC 140782 29 100.0 32 ............................. TTGGTGAGGTCCAGGGGCTCGAGCAGGTTCGC 140721 29 96.6 32 ............................G CGGCGCCGGAAGGTCGTCGCCCGCAAGAAGTA 140660 29 100.0 32 ............................. ACGACCCTCTGGGGCCTCCGCGTCGTCGTGAC 140599 29 100.0 32 ............................. TCGATCATCGAGCGGGTGCTGGACCCCACCGT 140538 29 96.6 32 ............................G TGGTACCAGCGCGGCTACTGGCAGGCGCTCCG 140477 29 96.6 32 ........................T.... GCTGACGTGTACGTCGAGGGCAACGTGGTGAA 140416 29 100.0 32 ............................. TCGTCCTGTGGGCAGGCACCCGCGAGGTCGCC 140355 29 100.0 32 ............................. GGGTGGGCTTAGATGGGTCTTGCTAGACACCA 140294 29 100.0 32 ............................. CGTCGCTCGAGGTGGACGACCAGGCGCGGGTC 140233 29 100.0 31 ............................. CCTGGAGGCTGTCGAGCGCGCCCTCCGCCGA 140173 29 96.6 32 .......T..................... GCCAGGGTGTTGATGCCGAACCCGGTCGACGC 140112 29 100.0 32 ............................. GCCGACGCCGGCTGCGCGGTCGGCACCGCCAC 140051 29 100.0 32 ............................. GACAGTCGCGCCGTGGCAAGGCTGTTCCCCGC 139990 29 100.0 32 ............................. GCGCTGCGCGTGTTCGACACGCAGCTCGCCAG 139929 29 96.6 32 ............................G ATCGAGGAGACCTTCGTCCAGGTCGTGACCGG 139868 29 96.6 32 ............................G GCGCCCGCGAGGATCCACTGCCGCGACGCGTC 139807 29 100.0 32 ............................. ACCCGGCGCGCCTCCCGTCCCCGCGAGGCGCC 139746 29 96.6 32 ............................G ATGGCCGACCTGCGCGTCATGACCGGCGCCGT 139685 29 96.6 32 A............................ AGCAGCGGCGTGGTGGAGGCGTGGCCGGCCCC 139624 29 93.1 32 ..................T......A... GTCGTCACCATGGCCGCCGCATCCACTCTCGA 139563 29 100.0 61 ............................. TCCACCGGCTCGATCGCGAGCACGGCCGAGGTGTCGTCTCCCCCACACGACACACCCCGTC 139473 29 100.0 32 ............................. CACCCGCTCACCCACGCCGTACCCGGTGGCAT 139412 29 96.6 32 ............................G GTCGCGGTGGACTCGCGCGTGGGTGCCGCCCG 139351 29 96.6 32 .C........................... CACAGCGGGACGGTCGCACCGTCCTCTGTCGG 139290 29 100.0 32 ............................. TGGCTGTAGCGGACGGCGTCGAACCCGCCGAG 139229 29 100.0 31 ............................. AGAACCCACGCGACGGCGACGTCGGGACCCA 139169 29 100.0 32 ............................. CTGCCCGGCCCGCTCGGCGACGTCGCGCTTGG 139108 29 93.1 32 ....................A.......G GTCCGTGAGTGCCGTTCCGACTCGTGGGACGC 139047 29 96.6 32 ...........A................. GCCTTGCGCGAGGGCACGCGCTGTCCCGACTC 138986 29 100.0 32 ............................. GACACGAGCACCGTCGTGCGTGCCGGGGTCCG 138925 29 89.7 32 .................CA.C........ TCGTTGTCGCGCTCGGCGAGCCGGTTCGCGGC 138864 29 100.0 31 ............................. TCGTCCGGCGTCTCGTTGTTCCGTAGCGGTA 138804 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ============================================================= ================== 63 29 98.3 32 GTCGTCTCCCCGCGTGCGGGGATGAGCCC # Left flank : GCCGGTGGCACGTCCTACGCGGAGCCGGACTGGTGATCGTCCTCGTGCTGACCGCCTGCCCGGAGGGCCTGCGCGGGCACCTCACCCGCTGGCTGATCGAGGTCTCCGCCGGGGTCTTCGTCGGGAAGGTCAGCACCCGCGTGCGTGACGAGCTCTGGGACCGCGTGGTCGAGCTGTCCGGCCGCGGCCGCGCGGTCATGGCGCACACCGCCCGCACCGAGCAGGGGTTCGCCCTCCGCAGCCACGGGCACCACTGGGAGCCGATCGACGTCGAAGGGCTCACGCTGATGCTCCGGCCGCACGGGGCGGAGTCGGCCGACGCGCCGGCACCGGCCGCGGGGTGGAGCAACGCCGGGCGGCGGCGGCGGATCGGACGGTAGCGGCACAGGTTCATCAGCGCTGATCGTCGCGCCCAGCGGCGGGCGCGACAGCCCTCTGCGGGGGCGCGCGGAGTGAAGTGAAAACGCACGTCGAGCGGGTATCGTCACAGGTCAGGAAGT # Right flank : GACGGGAACCCCGTGCGGGACCACGTGGTGTTCCAGCCGGAGCTGGTGGTGCGGTCCTCGAGCGTGCCCGCCTGAGCGGTCGCGTGCGACCGGCCGGGTGAAGCGGGGCCCCCACCCGGCGCTCCGGTGTCACCCGCACCGCCCCTCCGCCGTCCCCCGTTCGGGTCGTTCCGCCTCTTAACCGGTTTATCACCCGCGCCCGCGCCGATCGGAACGGCGGAGCGCCGCCGCACGAGCGGTGCCGGAGCCCAAGGAGCGGGTCGATGACGACGGTGGCGGACGACAGGCGCGGAGCACGGGTGGGCGCCAGGGTGGCCGGGCTCGGCTTCGCCGCGAAGATCCTGCTCACGGTCGCGATCGCGGTCCTCGCGACCGTCGTGGTGGGCCTCGTGTCCGTGTCCTCGGTCCGGCAGATGGCCGACGTCTCGCACCGGATGTACGACGAGGACGTCCAGGGCACCGCCCTCGCCGGGGAGATGCGGTTCCAGATGGTCACCGCC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCTCCCCGCGTGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.50,-10.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 157313-154170 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLPH010000002.1 Cellulomonas hominis strain N95 No95_ctg002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 157312 29 100.0 32 ............................. GTCGCCTACCGGCGCGTCGCAGGCACCGGCAC 157251 29 96.6 32 ............................G TCGAGCATCTGCACGCCGCCGGTGCCTGCCGC 157190 29 100.0 32 ............................. AAGATGAAGGAGCTCGGCATCTCGGCGTACGA 157129 29 100.0 32 ............................. ACCGACCCGTCCAGCGGGCGGCACGCCGCCGA 157068 29 100.0 32 ............................. GGTGATCTGGCAGCAGCGGCCGGGCTGGCGGT 157007 29 100.0 32 ............................. TCCAGCGGGCGCGCCAGGTCGGAGATCACTCC 156946 29 96.6 32 ............................G CCGTGCAGCGCGCCGAGGTCGGCGTTGTAGCG 156885 29 96.6 32 ............................G GCCCGCACCGACAAGGCCGCGACCGGCGGCAG 156824 29 100.0 32 ............................. AGGACGGGCGCGATCAGCGAGACACCGCCGAC 156763 29 100.0 32 ............................. CTGGCCCGGTACGTGCAGGGGCTGCCCGGCGC 156702 29 100.0 32 ............................. GAGTGGCCGAAGCTGGTCGAGCCCGTGCGTGA 156641 29 100.0 32 ............................. TCCACCCAGTGCTTCCGGGGCCACGCCTCGAG 156580 29 100.0 32 ............................. CAGGAGCGCAGGGTCGGCATCTCGCGGGCAGA 156519 29 100.0 32 ............................. GCGATCTGCCCCCACTCGTCCACGCGCAGCAG 156458 29 100.0 32 ............................. GCGTTCTCGTGGGCGAAGTCGTGGCACCCGAA 156397 29 100.0 32 ............................. GTCGGGGACCTCGTCCACGAACTTGATGCTCA 156336 29 96.6 32 ............................G GCAGCCGAGGGCATCGAGAGCGTGACCAAGCA 156275 29 100.0 32 ............................. GTCATCCCGGACATCGCCGCCGCGAGAGCCGG 156214 29 100.0 32 ............................. GAGCGGCCCTCGGCGGTGGCGAACCCGTCGGC 156153 29 100.0 32 ............................. GCGACCCCGTGTCGGCGCCCTAGCCGACCAGC 156092 29 100.0 32 ............................. CGGCACGTGGACGCCCGACACCAGGAGCTCGG 156031 29 96.6 32 ............................G ACGGTGGACCACCTTGAGTAGGTGAGACGAGA 155970 29 100.0 32 ............................. GGCCCCCGACCGGAGCCGCCGCGGTACGAGTG 155909 29 100.0 32 ............................. CTGGCGACCACGCTCGGCGGCAGCCCGCAGGC 155848 29 96.6 32 ............................G GCGTCCCGCGCCGCGGCGATCGAGGACGCCGA 155787 29 96.6 32 ............................G GAGGTCGGCAAGAGCCTGCCGCGCACCACGAC 155726 29 100.0 32 ............................. AAGGTCGCCATGTTCGCCGCGGCTGGCGTCGC 155665 29 100.0 32 ............................. GGCTGGCCGGTCATCGCGTCCGGGTCCTCCCC 155604 29 100.0 32 ............................. GACGCGGCGGTGGAGATCGCTGGGAAGCTGGC 155543 29 93.1 32 ........T...T................ CGGTCGATGTGCGGGCCCGGGACGCCATCGGC 155482 29 96.6 32 ............................G CACGCGGACGGCAAGGAGTACCAGCACATCGT 155421 29 100.0 32 ............................. TGCTGCTGCGCCTCTGCCTGGCGGTTCCACTC 155360 29 100.0 32 ............................. CGCTCAGACTCCGCCGCGCCGCTCGACCCGTC 155299 29 100.0 32 ............................. TGCCGGTCCGCCTCGGACGTGTCGAGCCGGGC 155238 29 96.6 32 ............................G TCGTACACGCTCACGGAGCGCGCCATGCGCCT 155177 29 100.0 32 ............................. CGCGAGCGTGTCGTCCCACCCGTAGAAGCGGC 155116 29 100.0 32 ............................. CTGGCGTGCCCCGAGGGCACGGCGTTCACCGT 155055 29 100.0 32 ............................. AGGTCAAGCTCTCCGGCAACGCCGTGACCCCG 154994 29 96.6 32 ............................G GTCGTCGCCAGTGACCTCGTCTGGGGCATCGG 154933 29 100.0 32 ............................. CCGTACGCGGACCCCGAGACCGGCGAGGACCT 154872 29 100.0 32 ............................. TCCGCGCGCTTCGCGATCAGCCCCTCGATGAC 154811 29 93.1 32 ....A.......................A GCGACGCAGGACGGTACCTACGCCGACCCTGA 154750 29 96.6 31 ....A........................ CCACGGCCGTCGGCGTGGAGGCGAACACCAT 154690 29 93.1 32 ....A.......................G CTCGCCGGCTGGCCGTCGTCCCGGGACGTGGC 154629 29 96.6 32 ....A........................ TTCACCGCCCCGAACAGCCCGAGCACCGCCAG 154568 29 89.7 32 ....A..........A...........G. GTCGCCGGAGACGCGGGCCGCCACCTCGCGAA 154507 29 93.1 32 ....A.......................G CCCGCATCGGTCACGGCGTAGACCGCGCCCGT 154446 29 96.6 31 ....A........................ TTGACCTTCTTGCGGTCCCAGCGCTGGCCCT 154386 29 89.7 32 ....AT................C...... TCGGTGCAGCGGTCGGACGCCTTCAGCCACCC 154325 29 93.1 35 ....A.......................G GCATCGTCCAAGGCGCCAGTCCGTCGCCCTGCGTG 154261 29 100.0 33 ............................. ATCCCCCGTGACGTCGATCGCCGCAGTGAGTCT 154199 29 100.0 0 ............................. | A [154193] ========== ====== ====== ====== ============================= =================================== ================== 52 29 98.1 32 GTCCGCTCCCCGCGTGCGGGGATGAGCCC # Left flank : CGCGCGCCGTGTTCTGCGTCAACGACCTCGTGGCCGTCGGGGTGCAGCGGGAGATCCGCCGGCGCCGCCCCGAGCTGCTCGGCCGGACCGCCATCGTCGGGTACGACGACATCGAGATCGCCGCCGAGCTGGCGACGCCGCTGACCTCGGTGCGGCAACCCGCGTACGAGGTGGGCTACCGGGCGGCCGATCTGCTGCTGTCCCGGGACGCCGACGGGAACCCCGTGCGGGACCACGTGGTGTTCCAGCCGGAGCTGGTGGTGCGGTCCTCGAGCGTGCCCGCGTGAGCGGCGCTCGCGCCTGCACCGTGACGTCCCCTTATCCGAGCGGGCCTCCGCGTCGCCGGTGACGTCCACGACGGTCGCAAAGCCGCTGGACGTGACCGCTGAGGCGTGGCCGCGCACCTCCGTCACCGTTACACCGCCGCGCTCATGCCCTACCCGCGGCTGGGATTGAAGGAGAAGCGGGCAAGGCCGGGGTATCTTCGCTGGTCAGGAAGT # Right flank : TACGTGTGGGACTGGGAGACGGATGACCCAGTCGCGCGCGGCATCGCGTCGGCGGCCCGTCGGTCAACTTCCGCGTTTGCGCGACCCCACCAGGACATCTACGCGACTCTGAGCTACGGTATAAGCAATAGCAGACGGGGCCTGACGATGCTTATGCCAGATGTGTGGTCCGCACTAGCGGAGAGCCACGAGATCCTGCCCACCGCCGACTCGAGCCTTCGGGCGGACGTGGTGCTGCGTGGGCCGGCGTTCCCTGCCACGCCCTACGACGTCAGAACGGTCTCGACCCTGCACCCGTCACGCGTCCGACGGTTCGCCGACCCTGCCGGCAGCACGCCGGAGGACCTGCCGCAGGTACTGGTGATCACCGCGTCCGCGACGCCCGCAGCGGTCGATGCGGCACTGACGGCCCGCGTGTCCGTCCTCATCGCACCGGAGCACGGCCCGGTCAGCGGAACGCTGATCGACAGCGACGGCCGGTCCCACACCGTGGACGCAGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTCCCCGCGTGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.50,-10.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //