Array 1 12792-11418 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWOM010000041.1 Ralstonia pseudosolanacearum strain PD 3634 IPO4023-2017_41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12791 29 100.0 32 ............................. TGGCTCCACCAGCATCTACCCATACCTCAGTA 12730 29 100.0 32 ............................. TACGCTGTGCCCCGCGCCGGTCTTGCATGAAG 12669 29 100.0 32 ............................. CCGCTCAGGATGGATTGCCATTTTCTGTTAAC 12608 29 100.0 32 ............................. ATTTCAACATCGGTATGGAGGCAGCGATTCAG 12547 29 100.0 32 ............................. CCATCACCCGCGCCAGCGCCGCGACGGTGGCC 12486 29 100.0 32 ............................. ATCAGTGGTGGATTCCGTGGGGAGTGGCTGGA 12425 29 100.0 32 ............................. CCGAACCTGCAGTCCATGCGCCCGCTGGGTCA 12364 29 100.0 32 ............................. GCGTCAACGTCCCAGCCAGGCGGTACATGATG 12303 29 100.0 32 ............................. GCGCCGCCCGCAGGACCGTCGCGGGCGGACGG 12242 29 100.0 32 ............................. TTTCGCGTGTCCGGCCGGGGATTTCTTGTCGT 12181 29 96.6 32 ............................T ACAATGGGCTCGTATAGAACGTTTGACTCCCT 12120 29 100.0 33 ............................. CACGTCAGACGGAATGCGGTGCCACAACCTGGG 12058 29 100.0 32 ............................. ATTTCTGCACCTCACGAACGCAGACCAGATCA 11997 29 100.0 32 ............................. GCCACCCGCAGCGCTTCCTCTGGGTCGTCCCA 11936 29 100.0 32 ............................. TCGCTGGTGCAGGCGCCCCCGATGATGGTCGC 11875 29 96.6 32 ......T...................... GTGTTCGCTACCACGCTAATTGCCCGAGGCGT 11814 29 100.0 32 ............................. TCATCCCGGCCGGTAGCACTATCCGTGTAGAG 11753 29 100.0 32 ............................. CGCGGCAGCTCCACGAGGATGCGCGGATGGTC 11692 29 100.0 32 ............................. CAAACGAGTCTCGATAAGGTCCCTGTGCTCGA 11631 29 100.0 32 ............................. ACCCGCAAGACGCTCACGGCGGACCAGAAAAG 11570 29 96.6 33 .................A........... GGGGATGCGCGGCGTCTGTTTGTGCGGTTGGCC 11508 29 86.2 32 A.......T.........A..G....... GCTTAGTCGCTGAAGCTTGTCCAGATGATCGT 11447 29 86.2 0 ............C..........ACC... | T [11432] ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.4 32 GTGTTCCCCGCGTATGCGGGGATGAACCG # Left flank : TCGCATCATCCCCGCCATCGAGGAGGTGCTCGCAGCGGGCGGCATCTCGCCTCCGGAGGCCCCCCCGGAATCCGTGCCTCCCGCCATTCCCAATGCCGAGCAGCTCGGCGATGCCGGCCACAGGGTGCAGGGATGAGCTTTGTCGTGGTGGTCACCGAAGATGTCCCCCCGCGCTTGCGCGGACGGCTCGCCATCTGGCTGCTGGAGGTGCGGGCCGGCGTGTACATCGGCGACGTCTCGCGGCGCACGCGCGAAATGCTCTGGGAGCAACTGGTCGAAGGGCGTGAAGACGGCAACGTCGTCATGGCCTGGGCCAGCCCGCACGAATCGGGCTATGAATTCCAGACACTGGGCGCCAACCGCCGGCTTCCAGTCGAATTCGACGGGCTGCAGCTCGTAGCCTTTCAGCCGGCGGACAAACCTGTTCTTTGACAACGCGAACGATCGGTACCTTTTCGGTGGTGGAATTTTCGCTTCCTAATCAATAGGTTGGGTTAAGT # Right flank : CCGACTCCGCCGCAGGACAGGATCAGCCCGCCAGCCCAGCCCGCGCCGCAACAATCGCCAGCCTCACCTGCTCCGGCGCCGTCCCGCCGATATGGTTGCGCGAAGCAACCGAGCCTTCCAACGTCAGCACGGCGTGCACGTCGTCGCCGATCAGGTTCGCCTTGTCGCCCAGGCCGCTGATCTCGCGCAGCTGCGCCACCGACAGGTCGGCCAGGTCGCAGCGCAGGTCGTCGCAGGCGCGCACGGCGTGGGCCACGGCTTCGTGCGCGTCGCGGAAGGGCAGGCCGCGCTTGACCAGGTAGTCGGCCAGGTCGGTGGCGGTGGCGTAGCCCTGCAGGGCGGCGGCGCGCATGGCGTCGGCCTTGACCGTGATGCCGGGCACCATATCGGCGAAGATGCGCAGCGTGTCGACCACCGTGTCGACCGTGTCGAACAGCGGTTCCTTGTCTTCCTGGTTGTCCTTGTTGTAGGCCAGCGGCTGGCCCTTCATCAGCGTAAGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23409-22157 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWOM010000041.1 Ralstonia pseudosolanacearum strain PD 3634 IPO4023-2017_41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23408 29 100.0 32 ............................. ATTTGTGAGCGCCTCGCAGATGGGATGAGTCT 23347 29 100.0 32 ............................. CCTATGTTGCAGGATCAACCGGAGCAATGTCT 23286 29 96.6 32 ............................A GCCGAGACCCTGGCAGGCGGGCTCGAAACGCG 23225 29 100.0 32 ............................. AGGATGTCGATGATGACGGCTGGGCTTGGTTT 23164 29 100.0 32 ............................. TGCATAATAAACAATGTACTTAATACCTAACA 23103 29 100.0 32 ............................. TGACCGCAACGTACGGCGTCGCTTCTGGGCAG 23042 29 100.0 32 ............................. CGCGCAGATCGCGTTCTGCGCTTCGGCTTGCC 22981 29 100.0 32 ............................. CTGCCGCCCGGGTCGGACGTGACCCGCTTGTA 22920 29 100.0 32 ............................. TGCGTTGATCCGATCCTCGCTGCCTTCGGTCG 22859 29 100.0 32 ............................. CGGTCGGATCCATACCACTTTCTGACATGAGC 22798 29 100.0 32 ............................. GGATTACATGCCCACAATTGACCAATTATCGG 22737 29 100.0 32 ............................. CATGTAGAAGCAATTATCAAATTGCGGAACAC 22676 29 100.0 32 ............................. CCGGGTCAGTCACGGCTAAGAGAGAGACAGGG 22615 29 100.0 32 ............................. CCGAGGGCATGCGTCAATACCTGAACAGCCAA 22554 29 100.0 32 ............................. ATTCCCCATCCCTTTTTTTCGACTACTTGCGC 22493 29 100.0 32 ............................. CATCAATCAGACGCGAGCACAGGATTTCCGCT 22432 29 100.0 32 ............................. TCGCAGAACACCCCGCCTCCACGCACCGAGAC 22371 29 100.0 32 ............................. ATGCAGGGCGGCGCGTTTTTCCGCCAGCTGTT 22310 29 100.0 32 ............................. TTGACCAGGGTGTTGGCCAAGCGCTTGGCCAT 22249 29 100.0 32 ............................. GGATGATGTCCAGGAGGTATTTGATTCGATTA 22188 29 86.2 0 ............CA..........T...A | TC,A [22160,22164] ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.2 32 GTGTTCCCCGCGTGTGCGGGGATGAACCG # Left flank : CGTGCGGCAGTATCCGCAATACGAGCGCATCGGCCTGCGCGAGCTGTGCGACGCCATCCACAGCGTCTACAAGGCCAACGACGTGGCCCGCGTGACCACCGAGATGTACCTCTCCAACATGGAGCCGGCGATGAAGCCGTCGGACGCATGGGCCAAGATGGCGCACCGCGAGACCGAGCGCGTGGCCATCGACGACCTGGAGGGCCGCATCACCGCCATCCTGCTGACGCCGTATCCGCCGGGCATTCCGCTGCTGATCCCGGGCGAGCGCTTCAACCGGACCATCGTGCAGTACCTGCAGTTCGCGCGCGAGTTCAACAAGCTGTTCCCCGGCTTTGAGACCGATATCCACGGGCTGGTGGAGGAGGAGATTGAGGGTCGGGTTGGGTACTTTGTTGATTGCGTGCGGTAGGGCGTTGTCGCGAGCTTTTGTCCGGTGGTAGATCGGTAGATTTTTTGGGGCCGGATTTTTGCTTTTGGATCAGGGGTTTGCGGTAAGT # Right flank : ACCAGCCCCAGTTCGTGCGCTGCCTGCAGGGACCAAAGAAAGTCCGCAGATTAATCCCTTTCTAATCCATCAATTGGATAGTCTTTATATCTACTGAAGTCACCCAAGAAAATCAAAATAAATACCCGCAAGACTGCTACGATCCCCTGCTCGGGAGCAGGCACAGATTGTCAATTCATTGGCATCAAGAACATGCATCAGGCTGACATGGGGAAAGGGGGGGTGCGATACTTTGCGTATTGGGGCAAGGCACGCATGCAGGAAGGTGCCGGCCAGCGATATCACCTGCTTGCCTTTCATGCACTGGATGTCGCGGCCTGCGGGGTGGAGTTGCTGCGACTGCCCCGGTTTACTCTTGCGCCGCTGGCTACGGAACTTGGCTGGCCATTGCAGGCCGTCAACAAAATATTCGCGTGGTTCCTCGCGCTGCACGATCTTGGCAAGTTTGCGCGCGCTTTTCAAAATCTGGCGCCAGGGTTATCTCCCGATCTCGTCTCTCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //