Array 1 17893-16670 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMWW01000035.1 Neisseria meningitidis strain NM1550, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 17892 36 94.4 30 ........G...A....................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 17826 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 17760 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 17694 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 17628 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 17563 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 17497 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 17431 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 17365 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 17299 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 17233 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 17167 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 17101 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 17035 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 16969 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 16903 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 16837 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 16771 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 16705 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCT # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //