Array 1 946456-946752 **** Predicted by CRISPRDetect 2.4 *** >NZ_FBQX01000001.1 Campylobacter coli isolate C8C3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 946456 36 100.0 30 .................................... CTATTTTTTCATTAAGTGCTTTATACCTTA 946522 36 97.2 30 ......C............................. AACTTTGCGATCATCATACAGACTTGCTTT 946588 36 100.0 29 .................................... ATCGCTCTCACTATCAATATTTATTTGAT 946653 36 94.4 29 ......C...............T............. ATAGCAAAATCACATATAGTAGTTATTAA 946718 35 80.6 0 ......................T..-.TA..TT.T. | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 94.4 30 ATTTTATCATACAAACATTTAACAAGAGGCTAAAAC # Left flank : TAGTGAGAGTAGATTTGTTTGTAGATAAAAAAAGCAAATTTCATGCAGTTCCTATTTACAAAGCAGATTTTTCCACAAAACAACTTCCAAATAAAACTCCTGCTGCCATATCAAACGGAAAAATCAAAGAAGGGGTTGAAATGAATGAAAATTATAATTTTTATATATCATTATATAAAAATACCCCAATTAGCGTGAAAATCAAAGGCATGGAAGAGCCTATCATTTGCTATTATCACGGTTTTAATATTTCAGGAAGTCAAATAATCTACAAAAAGCACGACAATAATTATTATAATCTTAGCAAAGATGAAATGGCTATTTTTAGAAAAGGGGATAAAGAAGCTATAGCTATAGGAAGAATGCTTGAAATTAAAAAATACAACATAAGTCCTTCAGGTGAATTAATTTTGATTGAAAATGAAGAGCGTAAATGGTTTTAGATATTTTGTGAAAAAATAATAAAAAACATTGATAAAATAGGCTTTTAAAATAAGTCT # Right flank : CCTCCTGCCATCATTTTTTTAAATAAAAATTTTCCTTAATATGCTTTCATCAGAGCCTTTTAAAAAATAATAAATTTTCTTTCTATAGCTTGACTCATCTTTTTTCCAATTGTTTAATGTTGCTAAAGGAATTTTTGTAATGTCAGCAATTCTTGAATCATGCAAGCCTATATTATCATAGCTAATGGCATCGGAGAATATTTTTTTTAATTCTTCTTCATTTGTATTTTTTAAAAAAAGATATAGCTTAATTCTCCAATTATTCTCTTTTTGCTTCCATTCTCTGATGGTAAAATAAGGAATATTAGTAATTTGTGAAATTTTTACATCATTGTTCATCAGGCTTAAAACCACTATCTAAAATTATTTTTGTCATTACACCCTTAAGATGATCAAAATGATTTAAAGCCTGCATATTACTAACTCTAAGAAGTCTTATTTTCCCATCTTTTTTATAAAACACTTTAAAAACTTCATCACTTTGTTTGTGTTTTACCATA # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTATCATACAAACATTTAACAAGAGGCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 1318218-1318515 **** Predicted by CRISPRDetect 2.4 *** >NZ_FBQX01000001.1 Campylobacter coli isolate C8C3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1318218 36 100.0 30 .................................... ATATGGTAATTTAGTTATATTAAATTTAAT 1318284 36 100.0 29 .................................... CATAAAAGGAGCTTTTGTTTCAATTACAA 1318349 36 100.0 30 .................................... AATACTTGCGATTTTGATAGTGATATTATA 1318415 36 100.0 29 .................................... AAAGAATATCCACTTTTAAATATTCTTTG 1318480 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTTTAGTCTCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : AAGACCATTACAAGCTTCTTTTATATCTAATTCACAAGCTTTTTCATAGTATTGTTTAGCTTTAGAATAATTACCTTGTTTATGTTGTTCTTTTCCAAGATCAAAATAATTATCATTTGAATAAACGCAAACAGGTATTAAAGTAAATACAAATATGAAATATTTCATTACCATCAATTTTCCTTTTAAAGCTATATTATTTGAAATTTTTATATTCTTTACAATCATATTCATCTCCTAATTCACAAGATTTTTCATAATTAATTCTTGCTGTATGGCAATCTCTTTCGATGTACTTACACTTCTTTAATAAAATAACCATCGTTCGAAAATACATTTGTTGTTAATAAAATTAAGAACTAATATATTTAATTTTATTTGTTGCCTTTTATAATTAATTGTTAATTATAGCATAAATTATAATTTACAATTGATAATATGTTATGTAAAAATTAAAGTTTGAAAAAATTTATTTTTTCAAATTCCAAAAGCGACATATT # Right flank : TAGACTTTGAACAAATAAAGAAAAATAGAGCTTTTTGTATACAAAAATGTATAAAAATATGCTATCATTTTAAAAGAGAAATTTAAAAAGAGACTAAAATAAGTGGTTTTCGGTTAGCCACGCAGGGTTACAATCCCTTTAAAACCGTTAAAATTCAAACAAACTAGCTTGTCTAATTTTATTAGACTTAGTTTTGTTTTCTTTGTATATCTTGTCATTGCTGTATTTAAAATCTTGTGTTTTTTCATCATACTCAAAAAGAACTAAATTTTTATCATCATTCATTTTTTCATTAAAAGAAACTCCGCCTAAAAGTATTTGCATATTGTCAAATTGTTTTTCAGTTATGGTTAATACTCTTATATTGCCACAAGGGGGTAAAATTCTTTCTACGGATTTGATTGCTGTTTTAGCCGAAGTCATTCCTTTACAAATTTTAACATATACGCTAAATTGCATCATAAAAAAGCCAAGTTTTACAAGCGAAACTCTAAATTTAT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCTCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [81.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //