Array 1 11404-12351 **** Predicted by CRISPRDetect 2.4 *** >NZ_AODJ01000017.1 Listeria weihenstephanensis FSL R9-0317 c17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 11404 30 100.0 36 .............................. ACCAGCAAATCCCCTTTTTCATAGACTCGCTTTGTT 11470 30 100.0 35 .............................. GTTGATGGGGGTGACATTGGTTTTCCATCATCGCC 11535 30 100.0 37 .............................. CTGGACCCCGAATACATATCGTTATGGTGAATATGCG 11602 30 100.0 36 .............................. ATTTTAAAATCAATCTCACTTGGCTTCAGATCCACA 11668 30 100.0 36 .............................. ATTCTTTCAAGGTGTAATTTCCATTCGCTAGTTTTT 11734 30 100.0 35 .............................. AATCATATTCGAGGGCGTATATACCTGACTTACCA 11799 30 100.0 34 .............................. AACAACCCAAAACGAAGATATGCTAGAAATCTAT 11863 30 100.0 36 .............................. TCAGGATATTCTGAATCTGTATCGGGATGGAATAAG 11929 30 100.0 35 .............................. TATACTGCCGCCGAGCGCAACGTTGAGTTTATCGA 11994 30 100.0 35 .............................. TCGTATTGAGCATATAGGCCACATTGTCCATTGTC 12059 30 100.0 36 .............................. GCTATTAACGGAAAAATAGCAACCACGACAAACATT 12125 30 100.0 35 .............................. TGGTACACAAACACCGCATTCTTAGGTAGCCAAGC 12190 30 93.3 35 A............C................ GTTGATTTCAATAACTATGCGAAACTGATCTTTTC 12255 30 93.3 37 .G......T..................... TCCAGCAAGTCTTTATTTTCGTGAATGTTGCCGATGG 12322 30 76.7 0 T..................A..T..GG.CA | ========== ====== ====== ====== ============================== ===================================== ================== 15 30 97.6 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAATTTGGTGGTGAATAAAAAATGTATATAATCTTGATTTACGATATTGCACAGGATAATGGCGGCGCAAAAGTATCGCGAAATATCTTTAAAATCTGTAAAAAATATTTAACGCATGTTCAAAAATCCGTTTTTGAAGGAGAAATTACACCACCGTTATTAGTGAAATTACGGATGGAGCTGGATAAATATATTCGTGATGAGGAAGACTCGATTATTGTGTTCTCAAGTCGGCAGGAAAGGTGGCTAGAGAAGGAGTTTTGGGGAGTTCCCGATGAGAAAACATCCAATTTCTTCTGATAGATGAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTATGGGGGATCGACAGATTTCAATAAACGATTGCGCTGGAAGGGATTTCGGGTTTTTGATGGTGTAGGGGAAGCTGGAAAGGTAGAGAAAAAACAATTTTTGTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAGGGACGAAATAGGACGG # Right flank : AGGACAGTTACAAAATTTCTGTACGAACAGTTTTTATCCAATTAAAATGATGCAACACAAAAAACGCCACTACCAATCCAAATGGCAGTGGTATTCTAAAATTCTCGAACAATCTAATACACATATCAATCAAAAATCCTCGTATTAACCAACGCTTGAAAATACCCATCCATCTCCTCAGCCGGCGTAGTCTGCTCTTTACTCACCCACCACAAAACCAAACCGGAAATCGCGTGGCCGAAAATCTCAGCGATGATTTCTTTCGGAACATCCGTATTCTCCCCATCTTTCAATAACTCACTCAAATCAGCAAGCATCAAGTTATTCATCTGCTTCCCAAAGTCATTTCGAAACTGTTCGCTGGCGTGAAAACACTCAAATATTGTTAATACCAGCTGCCGATCCCAAGCTTCGAACATGCACATGAATGGCTGGCACAATCTTTCTCTCGGCGTAAAGCGATCAAAGCCTGCCTGCATCTTATCCACGCAATATGTCAA # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 42626-42392 **** Predicted by CRISPRDetect 2.4 *** >NZ_AODJ01000004.1 Listeria weihenstephanensis FSL R9-0317 c4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 42625 36 100.0 30 .................................... GGATTTAACGTACTTCACAAGTACAGAGTT 42559 36 100.0 30 .................................... AAAATGGACGAGATTATTGTCGGAGAGTGC 42493 36 97.2 30 ..............C..................... TATGAAAATAATGTAACACCAATCGTTTGG 42427 36 80.6 0 ..............C............A.A..TCCG | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 94.4 30 GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Left flank : TTATTTCTTTATTAATCGCTTTATTAATTGCCTGCTTACGCCTATTTTTTTTCTTTTTTCATCAGGTTTTCTCACAGTTTTATTGAGGATACTCTTATAAAACGATTCTTTTTTCTTATCAAATATAATTTCTGTTGTCTTATTTCCATCGATACCTTCATAAACCAGTTGACCTTCCTTACTTGTCCTCTCCATTACGATAGTTCTTCCATCTACTCTCATCTTTGTGATTTTCATCTGTCTACTCAGCTCCATTTGGTTTTATAGTCATGTACCTAATGCTTCATTATTGCTGAAACTTTAATTGGTTTCTTCATGCGTGTATGAAATTTCTATTATTTATCAATATATTCATTATACAAGAAGGCACGTTGCAAGACAACATTCGCTGACAGTTCATCTACAATACTAAGAATTGAATAAAGCCATAAAAACCAATAATCCAGTTCTTTGGATCACAGTTTTTATGGCTTTATTTCGAATACTTATCCACAAAAGAG # Right flank : CCTATTCGCTTGCAACAACATAACTATACCAGATTATTAATGAATCTGCAGCTTGACAGATTAGCAAAACATAATTATTTTTTCATAAATTAAGAGACAGCTCAGCAGCCATCTCTTAAATTCAACCAATTATCTTCTGCTAACAAAATACCTTCCTTCTTGAAACTCTTCATAATAATTCAATACCTGTACCTCAAGTTTTTGTAAGTCAGCAACTGGGTTTTTAAGCAGATTTTCAGTTAACTGCTGCCAATGAAATTTTTACAATTACCGATATTAATAAATAGCAAAATTAAAAATCTAAGTTCAGAGAAAATGTTGCTAGTTCTGATTTCAATTAGATTTTTGTGTTGAATTATATCATAGGAATCTCAATATCATTTCCCTCTATACCATCCAAGAAAAAACCGGGTATGTTTGGATTCGATTTTTTCAATTTAAATAGTTGTACCTTAGTCAACTCTGGATAATATGAAATACTGCTGCGCTTGAAAACATCC # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 46672-46108 **** Predicted by CRISPRDetect 2.4 *** >NZ_AODJ01000004.1 Listeria weihenstephanensis FSL R9-0317 c4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 46671 36 100.0 30 .................................... CGGAAGATGTGGAAAAAACCATATTGGAAC 46605 36 100.0 30 .................................... CTGATTTAAGAAATCAAAAGGAAATTGATA 46539 36 100.0 30 .................................... AAATGATCTGATTGAGTGGATGGAGAGTGA 46473 36 97.2 30 .........................C.......... TTTGGGTGCCGATACGGATATAAACAAGAT 46407 36 100.0 30 .................................... GAAAAAGGTGAGTTAGCAAGCCTTGGAACA 46341 36 100.0 30 .................................... ATGACTGGGCTCAATAGTATCAGTATCTCT 46275 36 94.4 30 ................T.......C........... ACTTGTAGACCGTCTCACTCGATTATTCTA 46209 36 88.9 29 .......C......T.G..C................ ATATTTTTTGTAACGGCTTGCAATCATTT 46144 36 83.3 0 .......T........G..........T.T.T...A | T [46111] ========== ====== ====== ====== ==================================== ============================== ================== 9 36 96.0 30 GTTTTAGACCTCTTCTATTTTGAGGTACTCTAAATC # Left flank : TATGGATTTCCCCACGATAAAAAGTCATTTCAGGACTGCCAAAATCGAGAATATTTGTCTTGCTATTCGCTATTTTTTCAGTTAGCGATACAAATGATGTTAGGATGTCATTTTGTGATGTGGTCATGCGTGCTTGCCTCCTTGGTAAAATGTTGTTTTGATATTGTCATCGTAGCATACAATATTTTTGTATGTCAAGCTGACAAAAAAACACTTAAATTATCCAAACGAAAAAAACACCATAAACCGTATCATATCAACAGTTTACAGTGTCTTCATTTCCTAAAAACGGAGAAACGGGGATTCTGATGGTTGGATGAAATGCACTCGTGGTGCTGATTTCAACGCTTATAATGTTGGCTGCGTGGCAATTTTGTGGCAAATATTTTTAAGAAGATGTCGAAGATTTTATTCGTCATCTTCTTTGTTGTGCGAGATTCTAATACTCTTCTGTTTAAAGGGCTCTAGATTTTTTACATAGCTCATCGTTTCAATTTGAG # Right flank : GCAAAATGAAATTGCATTCTCCCATCCAATTTCATTTTGAAATTAACTGCAACATTCTATATCAAATTTCTAATAGTCTCTTTACTATACCACAATACTCTTCTGAAACTTGATTTGTTTCTATATAACCATTATCGATTTTTTTCTCACCTAGATGTCTCAATTTTTTTGGCTCTAAGCTTTTTATCACCAACCTATGTTTATTTTCTTTCAAGTTAGCAAATACGACGCTCATACCATGTCTATCTAAAATATCGATTAATGACTTGGAAACGGCATTCTTTAATTTACGATCATACTTAAAAATTTCTCTCAACCTCTCAGATAAATACAGCAACGTGCACTCAGATTTGAGTGATAAATAATTTAAATGCGCTATATGATTCCTTGCATTTTTCTCAGAAACAAACAGTCCTTCTTTTTTCAAGAATGTATCCAGCTTTTTAATACTTTTTAGTCTATTATCGCCCCAATATTCCACTCTCTCAGTTATTCCTGAA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGACCTCTTCTATTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 49707-47941 **** Predicted by CRISPRDetect 2.4 *** >NZ_AODJ01000040.1 Listeria weihenstephanensis FSL R9-0317 c40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 49706 29 100.0 34 ............................. GTTTCAATAAGTCTACGTTTTAAATTTTCGTTGC 49643 29 100.0 35 ............................. ATCGCAATAATTGTTAATGGTTTATTGACCAATCT 49579 29 100.0 35 ............................. CTGTAAGTTCCTCAGTGAACACCATGTAAGCGTCC 49515 29 100.0 36 ............................. CATGTATTAGGCTATGTGAATGGAGATAAAAAGCTC 49450 29 100.0 34 ............................. CTGCTAATTACAGTAAGTATTCAAAAGGCATGAC 49387 29 100.0 35 ............................. AACAACGAACGGTTGTCACTTTTACTTCAAAGGTT 49323 29 100.0 35 ............................. TAGGATCGCCGTATTCTTTAAACCATATTTTTTTA 49259 29 100.0 37 ............................. TCAGTCGCTAAGGTACCATTATCCGCGGTAAATTGTG 49193 29 100.0 36 ............................. TTGAAAAGGTACGTTCTTCTGGTGCACCTACAAGCA 49128 29 100.0 34 ............................. TGGGTTGAGCTCCTTTCTACTATTTATGTTCAAT 49065 29 100.0 36 ............................. GCAATCGCCAGCTTTTCGTAGTAACTAGCGGCATAA 49000 29 100.0 36 ............................. AAACATACGCTATAGCCCTATCTGTTGTTGATTCAT 48935 29 100.0 35 ............................. GAAGAAGAGAATATAGAAAGCAAGCGCAAGCAAGC 48871 29 100.0 36 ............................. ATATGTGCAACATTCTTTTCGTATCTTAGGATCAAA 48806 29 100.0 36 ............................. TGACCTGCTAATCGCAAGCCCATTGCTGTTATTTCT 48741 29 100.0 36 ............................. CTAAGTCAGGGTGTCGGGTAATAGTGAGTAGTTACT 48676 29 100.0 36 ............................. CTCGCAGCCTTTCGCCCATCTCTCTGCGGGTTTCTT 48611 29 100.0 34 ............................. CCCTTTGTGTACGGAATGCTAGAATTTGCTGATA 48548 29 100.0 34 ............................. CCCTTTGTGTACGGAATGCTAGAATTTGCTGATA 48485 29 100.0 36 ............................. CCTCTAAAGGCAGTCGGTAAAATGATAGAAAGTCAT 48420 29 100.0 36 ............................. GGCGTTAATTGATCAAGATTTAGACGTTATTTATCA 48355 29 100.0 35 ............................. GTAGGTACCCCAGTAGAGGTACTCAGTTGACCCTG 48291 29 100.0 36 ............................. ATTTGGCAGCAATCTCCGCTAGTTTGATTTGTTTGT 48226 29 100.0 35 ............................. ACGAGTAAAGACCCTTCACCTGATACTGTCCGACA 48162 29 100.0 36 ............................. CCGTAAGATCCGCCCCCTAAAAGAGGGATCTGCATT 48097 29 100.0 34 ............................. AAACAAGACGTGGGCGAGTTGGAAAGAAGATTGC 48034 29 100.0 36 ............................. ACCGCCACCGCCGCTTAAGGAAAGACTTGCTACGCA 47969 29 93.1 0 ..........G............A..... | ========== ====== ====== ====== ============================= ===================================== ================== 28 29 99.8 35 GTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : CAGTTGAAGGTGGGATCGACATGAAAAAAGGGCCAACAGCATGAACAGATCTATTTACAATGATTATTTATAAAATAGCACTATTTTCCTTGGCGATCGTATCTTGTATTATCTTTCTATTTAAAAGGAAAAAAGGCTAATCCGCAAAAGTAATAAACCTGTAAAAATATATCTAAACTATAGCAATCACTCCTTAATAACTGGAAATTCGATGTCCAAGTTAAAAATATAGAGTCAAATTGCTATTTTTTTATGCAAAAGAATAACCCATTTCTTCCTTCAAATTAAAAAACAGATAAACTATAAAAAATCTGTCGACCGCCAGTAGCGTAAAAACTACAGGCGATCGACAGATTTTGTTTGTTGACTGATATTACTGAGGTTAGAAGCATTTGTAGGAATTTATTTGTGAAGCTGACGATTAAAAATCATGATTTTGTTGTCGGTCGACAGATTGGGGGCTTTGAGGTATGATGGGAGTAAGGCTGAAATGGGTACGG # Right flank : TCCATAACCACAATTTCATCTTGAGACATGAGCTCCTATTTCATCCAAGCACCATGAAATAAATCCACCCCTATCCCCGCGCCACAACCCCAACACTCTCCAAAACCAACCCAACCAACTGCCCATTCTCAAACTGCGTATCCGCCAGTCCAACTTCCAGCCCTAACTCCAAAATCATCCGCGCCAAATAATTCCGCGCAAACTGCTCATGCGTGAATTCCGCGCCAAGCAACAACCCAATCCGCAAAAATTCCCCAGAAATAATCTCCACAAATCCGCTTTCCATCCGACTCCACTCAATTACCTGAAACAACTCCCGATTATTCTGCACCATCTCAACAACCAGTCGAACCACATTTTCCCGTAACAACTGCTCTTGATCGAATCTAACCGAAAACTCTCGTAACTTCCGCAAAATCTGCACCTCAATAATCTGCGAAACCCACTCGTGATGCCGATAAAAAGTAGCACGAGATACACCAGCCTCTGCACATAAATCC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 51168-50292 **** Predicted by CRISPRDetect 2.4 *** >NZ_AODJ01000040.1 Listeria weihenstephanensis FSL R9-0317 c40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================================== ================== 51167 30 100.0 36 .............................. GTTTGAGCATTTACGTGTTGAACAAGTTCAAACAAC 51101 30 100.0 38 .............................. CCATTTCCGCGGAAGATGAATATTCTGCCAACTGCCCG 51033 30 100.0 36 .............................. TGGATCTATTGTAAAACTTCCAGCATTATAGATAGT 50967 30 100.0 36 .............................. ATTGATTCCAAAAATGCCTAACACAGTTTGTGCAAC 50901 30 100.0 34 .............................. CCCACTGTCAAAATCATATCTAACGCCATATCTT 50837 30 100.0 36 .............................. ACCATCGCTTAGGCTTCCACCGAATTGATGGAATCG 50771 30 100.0 36 .............................. CCCTTTGCATTTGTGACTATTGACCCAGGTTTTGTA 50705 30 100.0 35 .............................. CCGATTGAAGATTCATCCAGAATATTTTCAACCAG 50640 30 100.0 36 .............................. ACGTATTACGTGTCAATACAGTCTTTCATCAAGTGC 50574 30 100.0 36 .............................. CACGATCTAAAAAAGTAATGGGTAAATTATAGCATG 50508 30 100.0 35 .............................. GTCATTAAGTTTTTCGGATTGTTATTCTCTCCCGT 50443 29 90.0 94 ...............G......T.-..... AAGCCGTCTCAAATAAATAACATTAATCGCGATTTATGCCTAAAAACCACTAAAAATACAAAACTCCAGGCCCAAATCAATTTCTTTAGGTTGC 50320 29 76.7 0 .....A...C.-...T....T...C..T.. | ========== ====== ====== ====== ============================== ============================================================================================== ================== 13 30 97.4 41 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : CCTCGTTGAAGTTCCAGATTCCACAAAAATTTGGGATGCCGACATCGTGCTCATCGCCATCGGATTCGCCGGTGCGACCCCATCTGTTTTTGAAGATTTCAAAGTAGGCAAAACAAAACGCCACACGATAGAGGCAGCAAAAGGCTTTTACCGCACCGACGTAGAAGGAATCTTCGCATGTGGTGACGCAAGATACGGCCAAAGTCTAGTCGTGACCGCGATTAATGAAGGACGCGAAGCCGCACGAGAAGTGGATTTCTATCTCATGGGTGAGACGTTTTTACCATAATAACAAAGAAGGCTCAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTACAGGACATCGACAGATTTTCTTTATGGACTGGTATGACAGGGTTTGGGCGGTTTTTAAAAGAACTGAATGTAAGGTTAAGTAGGCGAAAAAGCCAATTTTGCAATCGGTCGACAGAAATGGGCTCTTGAGGTATTATGGGAGTAAGGCTAAAATAGCACGGG # Right flank : GAAGGAGCCGTAAAATATAGGCAATTGAACAACAGACTTATTCCAAAAGTCATCGAATCAGGCATCAATCTATAAAGTGAAAACGCAGTTGAAGGTGGGATCGACATGAAAAAAGGGCCAACAGCATGAACAGATCTATTTACAATGATTATTTATAAAATAGCACTATTTTCCTTGGCGATCGTATCTTGTATTATCTTTCTATTTAAAAGGAAAAAAGGCTAATCCGCAAAAGTAATAAACCTGTAAAAATATATCTAAACTATAGCAATCACTCCTTAATAACTGGAAATTCGATGTCCAAGTTAAAAATATAGAGTCAAATTGCTATTTTTTTATGCAAAAGAATAACCCATTTCTTCCTTCAAATTAAAAAACAGATAAACTATAAAAAATCTGTCGACCGCCAGTAGCGTAAAAACTACAGGCGATCGACAGATTTTGTTTGTTGACTGATATTACTGAGGTTAGAAGCATTTGTAGGAATTTATTTGTGAAGC # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.41, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 43729-44730 **** Predicted by CRISPRDetect 2.4 *** >NZ_AODJ01000005.1 Listeria weihenstephanensis FSL R9-0317 c5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 43729 29 100.0 34 ............................. ATTGGTATATACTACCTGTGTATTCACGTCAAAT 43792 29 100.0 36 ............................. TTCGAAAAAACGACGGACATTCGTGTCATAAGCCCA 43857 29 100.0 36 ............................. CGCGAAATTAAAGATGAAATTGAAAAAGTAGGGTTT 43922 29 100.0 36 ............................. GTGCTTATTTTTGCGTTGACCTTGATTTCGTGCATT 43987 29 100.0 35 ............................. ACAATCGCATTTGCAGCTAAATCAGCTTGCCCAAT 44051 29 100.0 34 ............................. TTGGTAGCACATGCTGATATCCCATCGGATTATG 44114 29 100.0 36 ............................. CTGACACTAATATTTCACGTTTTGTGATTTCGATGT 44179 29 100.0 36 ............................. ACTTTATTACGGCAGGCACCCTTCAAGCTATCGACA 44244 29 100.0 35 ............................. TCGTTTACACCCATCGCATCAATTGAGAAATCCCC 44308 29 100.0 37 ............................. GTTCCTTGTACCGCACAAGAAACAGCAGCAGAGAAAT 44374 29 96.6 36 C............................ CCGAATACGAGATATTTAGATCAGCTGAAGGCGGCG 44439 29 100.0 36 ............................. ACGCATCATCATATCATCACCAAACACAATCGAATG 44504 29 96.6 38 ..........................C.. TCTTTTGTTCCCCATACGGGATTGATGCTGCACCACCG 44571 29 96.6 37 ..............C.............. AAGCTAACATCTACACTAACGATCGTTCCCCCTAGTT 44637 29 96.6 36 .........................G... TACTTCCATGCTTTTTTTAGTGCAAATATAGTTTGG 44702 29 82.8 0 T...........C...A......A....A | ========== ====== ====== ====== ============================= ====================================== ================== 16 29 98.1 36 GTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GACAAAGTAGCCGTTGCCAAAATGCAACCAGAAATGAATCTAGGAACACCATCGATCCTCTTGTATGGAGAGAACCTTGATGCCATGTACGAAGATTTCAAATCAAAAGGCATCACAGTTGGCGATCTAATCGACGTCCCAAATATGGGCCGTGTCTTCAACTTTGCTGATAATGAAAACAACTATTTTGCGATCCTTCAAAAATAACATCCAAATAAGCCTAGCTGCTCATTTTTCATTAACGAGCAACTGGGCTTATTTTATCGGAGCCCCCTATAAAATACAAAGAAGTTATTCCATCACATAAGAAATCTGTCGACCACCAGTAACGCAAAAAAGTGGGGAGATCGACAGATTTTGATAAACGATTGCGCTGGAAGGGATTTGGTGTTTTTGATGGGATGGAGGAAGTGGAGTAGGTAGGGAAAAAACAATTTTTTCTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAGGGACGAAATGGAACGG # Right flank : ATCCACTGCCGACGTAAATGCCCCCCATGCCATGATCATTAACCTCCACACAAAAAAGCCCCGTAAAATCGTCGAATGATTTCACGGGGCTTTCACATTTATAATTATTTAGAAGTTGATGTTTCAGTTGAACTTGACGCAGATCCATCATATTGCGTGAATGCATCTTTCAAGTCTTTATCATCGATTTTAACGTCTGCTTTTTTGTACAGTTTTTGTAGTGCAGCAGTTTTTGCTTCAGCAGTTACTTTCGATGCCAAGTAGTCTTTCTTCACTTGTGCTTTATCTTTCTCGAAAGTAGTTTTTGTTGGGTGGTCTAGCATCTTGATGATGTGGTAACCAGCGTCTGTTTTAGTAACTGGGCTGATGTCACCTTTGTTTTTCAAAGCGTAAGCAGCTTTTTCGAATTGTGGTAACATTTTACCAGGACCGAATGGAGCTAATTTACCGCCTTCAGTAGCAGAAGCTGTATCAGTTGAGTTAGCTTTTGCTAATTCTTC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //