Array 1 269898-274159 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ034007.1 Lactobacillus kimbladii strain Hma2 Hma2_scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 269898 36 100.0 30 .................................... AACAATCTAAAAAATATCGTGGAAGAATTA 269964 36 100.0 30 .................................... ATCAGTTGATTTTCAATGGTAAAAACTTAG 270030 36 100.0 30 .................................... ATGAGTTAGGCGAAGACTTATACGAGAGCC 270096 36 100.0 30 .................................... CCAAGAGAGCAACAATCAGCACAGGACCTT 270162 36 100.0 30 .................................... ATGCAACTTCTATGCAAGGTAGTGCCAGTG 270228 36 100.0 30 .................................... TTAGCTAATTAATGAAAGCGTGAAAACATG 270294 36 100.0 30 .................................... TTTCCCTCGTATTTAGCATGAGCCTTTACA 270360 36 100.0 30 .................................... TGGCGCCTTCCATGTGAGATAAGGTTTCTG 270426 36 100.0 30 .................................... TAACGTCAAAGTTTCCGGTACAGACTTACA 270492 36 100.0 30 .................................... CAATTTCTCTCTTTATAAGTTATTCTGTAT 270558 36 100.0 30 .................................... ACAACATTAATTATAATATATTTTACTTAA 270624 36 100.0 30 .................................... GAAAACAAATCAGATATACCATATTTACCG 270690 36 100.0 30 .................................... CTTTGTAAGACAAACTGAGCTTGATTAGGG 270756 36 100.0 30 .................................... TCAAAAACCCACAGACTGGCACAATGTTTA 270822 36 100.0 30 .................................... TATTTCTGACATGCAAGCGTCAATAACTAG 270888 36 100.0 30 .................................... ATGGGATATGGTTTCTATCGTGTAAGAGCA 270954 36 100.0 30 .................................... CTACTCAACAACGACAAGCCGTTATTTTAA 271020 36 100.0 30 .................................... ATGGGTTAATGATGTTGATATTGATTTAGC 271086 36 100.0 30 .................................... GCTGAGTTAAAGCCTTTTGATAATTGTCCT 271152 36 100.0 30 .................................... AGAGCATGTGTTATTGATCACTCACGTTTA 271218 36 100.0 30 .................................... TATAATGCAATCCATTCTTTTAATTTTAAG 271284 36 100.0 30 .................................... TGTTAGATTATAATAAAAATGATGAACTAG 271350 36 100.0 30 .................................... TTTTGCATTGCAACAGTTGTACGGCCAATG 271416 36 100.0 30 .................................... ATTTAACTACTTTTGAGGTACCAACTAGTG 271482 36 100.0 30 .................................... TCATTACTTTCATTAAATGTTGGTGGGGAC 271548 36 100.0 30 .................................... TTCTTCCACGTTTTCATAATAACTGAAGCC 271614 36 100.0 30 .................................... ACACTCTTCTTTCTATAATCAAATATTATT 271680 36 100.0 30 .................................... TCTTTTGTAAGCATTGCGGTAAAAAGATTA 271746 36 100.0 30 .................................... ACGACAAAGCGCAAAGTTGGGATGCAACCT 271812 36 100.0 30 .................................... ATTTGTGAGCCTACCATTGCTCCTAGTGGT 271878 36 100.0 30 .................................... AAATCCTTATCTCCTTGTCGTTGAAGGTCT 271944 36 100.0 30 .................................... TAAAAATACATTATTAATAGACCTAGATCC 272010 36 100.0 30 .................................... TAGTCAGTATAATACTCATAACAGCCACGA 272076 36 100.0 30 .................................... TACGTTAACCGTTATTTTAACAGACAATGA 272142 36 100.0 30 .................................... GGGCACATTCAATTTTACATACCAACATGG 272208 36 100.0 31 .................................... TTACCGCAAAAACTATACAAAACTATGTAAA 272275 36 100.0 30 .................................... ACGGTCATGTTGATATTGACTTGCGTCTGG 272341 36 100.0 30 .................................... TTATAACAGAATGATATTGTCTGAAGCTGT 272407 36 100.0 30 .................................... GTATACTGCAACTGATGAGAAAACAAAAGA 272473 36 100.0 30 .................................... ATGGTAGGACTCATTGCGTCACTATTAACT 272539 36 100.0 30 .................................... TGTATCTACATTGTACTATAATATAGATAG 272605 36 100.0 30 .................................... ACCAGCTTTTGCCTTAGCTTTGAACTCTTT 272671 36 100.0 30 .................................... TTTCTTCTTCAATTTTAGCGTTCATCTCTT 272737 36 100.0 30 .................................... CAAACGGTGGAGGCGTTCGCCTCGCGTGTA 272803 36 100.0 30 .................................... TTAGATGATGATGTATATCGTGAATTACGT 272869 36 100.0 30 .................................... AATGATGACTTCGTGGCAGGGCAAACGTGG 272935 36 100.0 30 .................................... TCTTTTGACGTTCTAATATATGGTATAGAT 273001 36 100.0 30 .................................... AAGCAACGTGCAGATAAGGCTGATAGTTTG 273067 36 100.0 30 .................................... TTCTTCCGCTTTATCAGAATATTGTATTCT 273133 36 100.0 30 .................................... TTTACTCAATACGATTGTCGCTAATACATT 273199 36 100.0 30 .................................... GAGTCATATCGCCATCATGGACTGGCTTAC 273265 36 97.2 30 ..........G......................... CCTTTGGTGTTAAAATCGTGAGATAGTCCA 273331 36 100.0 30 .................................... AACGGCAATTTTGCAAACGGCAAATATTAT 273397 36 100.0 30 .................................... ATTGTTCCATATGATGAACTCGCCGGCGCC 273463 36 100.0 30 .................................... TAGCAAAATAAGAAGAGTATGCATATCATT 273529 36 100.0 30 .................................... CTCTGATTGTGTTTTGTCATCAGGTGACCA 273595 36 100.0 30 .................................... CAATTGGCGTAAAAGTTGAGATCACTTTAA 273661 36 100.0 30 .................................... GTATCACCTAGTTATCAAGACCTACTTATT 273727 36 100.0 30 .................................... CAACGCAAAGGACATTACCGCCCAAACTAT 273793 36 100.0 30 .................................... ATTTTTATAAAAATATTAGTAACTGAATAT 273859 36 100.0 30 .................................... CATCACCTTGCAATTTGGCTAATTGATCTT 273925 36 100.0 31 .................................... CATGGCATCACGATTTAGTCTTATTTTGCAG 273992 36 100.0 30 .................................... CAAAAAGACGATCAAAAAGAACGATCCTTC 274058 36 100.0 30 .................................... TCAAATGAACGGCAAGCAATATTTTATAGG 274124 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 65 36 100.0 30 GTTTTAGATGATTGTTAGATCAATGATGATTAGAAC # Left flank : TTAGTGGGGATATTACTAAAAAGTATATGCCCCATATTGTAAGTAGTTATCTGAAAAATTTAGACGAGGAAAATCGCAATAAAGTGATTAAGTCTTTTTATAATTTAGAGTCAACCTTGCAGGATTCACTTTTACTTGAAGACTTGCCTTTAGCAATTAATTTTGATGAAGACTTAAAAAAATTACTTAAATTTACAGAAATTCATTTAGATAAATCAATGTTGCTCAGTCCATATGGTATAATAGAAACAGTTTTAAAAATTCACCAAACGTGTAATTTAAAATCAGTTCCTGTTATTTGTAATGTAGCTCATTACTTAGAAGAGCAGGAATGGCAAGAGTTAGCTAGTCTTGTCACAGAAATGAATTTAATTTTGGTTGTAATTGAATTCACAACAAGAGAAAATTTGGCAATATCTAAAGACATACCTTTTTACTATATTGATAAGGATCTAATCGATTGGTACTAGCAAAAATTAAAATCAGATTATAAAACATCG # Right flank : CAAAGAGGTAGCAAAAACCTATCCCAATTTCGTTTTAGATGATTGTTAGATCAATGATGATTAGAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGATTGTTAGATCAATGATGATTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGATGATTGTTAGATCAATGATGATTAGAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.90,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 274925-276742 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ034007.1 Lactobacillus kimbladii strain Hma2 Hma2_scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 274925 36 97.2 30 N................................... AGCTTTACTTTTGATAGTGATGTTCTCAGT 274991 36 100.0 30 .................................... TTCTGAAACTAGCATAGCCACATAGAGTTA 275057 36 100.0 30 .................................... ACTCTTATCTTTTAACTAAGTATATTATAG 275123 36 100.0 30 .................................... AATCGCTTCTTTGAAATTGAGCATCCCTTT 275189 36 100.0 30 .................................... GGCTGTTACTGCACGTTTGGAATTGATTAA 275255 36 100.0 30 .................................... ATACACTACCAGTAGTGTATAATATAAGTA 275321 36 100.0 30 .................................... ATAAAACTAGATGTAGCTTCGATTAGAGGA 275387 36 100.0 30 .................................... TAGTATCAAGTTTATCAGCCCTGTCGTTAA 275453 36 100.0 30 .................................... ACTACACAGAGAATACTAATAAGGTCAAAT 275519 36 100.0 30 .................................... AATAAACCTTGTTTGTGTCGGGGTCATTCC 275585 36 100.0 30 .................................... TCACGACACGCTCGCTCGAATTGCCCCTCT 275651 36 100.0 30 .................................... CTCCATACTCATTAGCTCTGACAATTGTTA 275717 36 100.0 30 .................................... ATGCCTAACAAGTACGACAGTGCGCATTAT 275783 36 100.0 30 .................................... TAGAAAAAATAAAGAGCCCACACATTCTGT 275849 36 100.0 30 .................................... CACGAATCAATCAGGTTATAACGTTTTATC 275915 36 100.0 30 .................................... TATTTCAAGAGATACGGTTTCAGAACTTTA 275981 36 100.0 30 .................................... AACCCAAATAGTTCCATCCCTCATAACACC 276047 36 100.0 30 .................................... TCGCCTTAAAGAAGTTGGGCAGGAATTGGA 276113 36 100.0 30 .................................... CAGCTCGACAAAATTGCTGTCCATATTGCA 276179 36 100.0 30 .................................... GCCACATGATGATTATGTAGACGCAATGAC 276245 36 100.0 30 .................................... ACATTCTCGAATCCTTCAATTAAGCCATCC 276311 36 100.0 30 .................................... TTTTTCGATATTAAGCTTTTGCCACAGCTC 276377 36 100.0 30 .................................... AGAAAGCACCCTTTCTGATCAATTAAGCGA 276443 36 100.0 30 .................................... CGCTCATGCTGGTCTAATATTAGAGAAGCT 276509 36 100.0 30 .................................... TTAAAGACAATACTTGCTCTTGGGTCATTC 276575 36 100.0 30 .................................... GCACCGCTGCAAACTCGCGGACGCATGCAG 276641 36 100.0 30 .................................... TGGAAGGTATTGCAATTCAACGTGTAAGTA 276707 36 86.1 0 ........CA......G......C..........G. | ========== ====== ====== ====== ==================================== ============================== ================== 28 36 99.4 30 GTTTTAGATGATTGTTAGATCAATGATGATTAGAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CATAATTAATTGGGTTAAGGAAAGCAAAATTTTAAATGAAAAAGTCAGTCAAATTAAGGGAATGAGGCAACTCTAGGGCGGTTGTTATCCATAGAAAAATGCTGAAAGAATATACGCAGTTCAGCTATTTACAGAGTTGCAATAGACTCTAATGAGGATAAGCAAACTATAACGATAAAAAAGGTTGAAGGCTGAATATAATATTTTGACTAAAGCAATTACAGAATATAATCCGCTGCCTATAACAAAGAAAAAATGAAAGGCCTGATCCGGAGAGAATATTGGGTTCAAGCCCTAAAGAAATGATATTGACTTTTGGTACTTAGTACTTTAATATTTTAAGAAATTGACACTAATTAAAGAAAGGTTGCTATTTGTTCACATGCAAAATATACTAAAAAGTAAAAACAACAAACTGTATATTTTGTCAGTGATCACCGATAACTTGGGCAGCTCTTTAATGTCATTTGCGTTGCCGTTGATGGTACTTGATATCACTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGATTGTTAGATCAATGATGATTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGATGATTGTTAGATCAATGATGATTAGAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.90,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //