Array 1 215471-213489 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNYJ01000008.1 Salmonella enterica subsp. enterica serovar Kentucky strain H5 Contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 215470 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 215409 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 215348 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 215287 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 215226 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 215165 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 215104 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 215043 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 214982 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 214921 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 214860 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 214799 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 214738 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 214677 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 214616 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 214555 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 214494 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 214433 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 214372 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 214311 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 214250 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 214189 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 214128 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 214067 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 214006 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 213945 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 213884 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 213823 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 213762 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 213701 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 213640 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 213579 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 213518 29 100.0 0 ............................. | A [213491] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 235206-233103 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNYJ01000008.1 Salmonella enterica subsp. enterica serovar Kentucky strain H5 Contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 235205 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 235144 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 235083 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 235022 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 234960 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 234899 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 234838 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 234777 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 234716 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 234655 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 234594 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 234533 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 234472 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 234411 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 234350 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 234289 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 234228 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 234167 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 234106 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 234045 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 233984 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 233923 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 233862 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 233801 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 233740 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 233679 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 233618 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 233557 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 233496 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 233435 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 233374 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 233313 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 233252 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 233191 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 233130 28 79.3 0 ..G............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //