Array 1 356311-358924 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQHK01000002.1 Listeria monocytogenes strain CDPHFDLB-FM17-00090 FM17-00090_Contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 356311 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 356377 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 356443 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 356509 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 356575 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 356641 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 356707 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 356773 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 356840 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 356906 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 356972 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 357038 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 357104 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 357170 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 357236 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 357302 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 357368 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 357434 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 357500 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 357566 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 357632 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 357698 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 357764 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 357830 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 357896 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 357962 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 358028 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 358094 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 358160 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 358226 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 358292 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 358358 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 358424 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 358490 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 358556 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 358622 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 358688 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 358754 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 358820 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 358886 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [358911,358917,358920] ========== ====== ====== ====== ==================================== =============================== ================== 40 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //