Array 1 77603-76708 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGBA01000001.1 Porphyromonas gingivalis strain CP3 NODE_1_length_146555_cov_282.391, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 77602 36 100.0 31 .................................... CGCTCAAAACGACTCAAGAAAAACAAATGAG 77535 36 100.0 30 .................................... TTCAAATATTTTAAGCCGCATTACTATTTA 77469 36 100.0 30 .................................... AAGGTCTCCCAAACACCGCTATCGCGCGGA 77403 36 100.0 30 .................................... TTTCGCCCGAGGCGGAGAATCCACAACCGA 77337 36 100.0 30 .................................... TATAACCCTACAGCTTGGAGTCTTCTTAGT 77271 36 100.0 30 .................................... TGGTCTGCTTTCACTAAGTTCTTCTCACAA 77205 36 100.0 30 .................................... GAATCGTTACGCCCAAATCCGCCGCGATTT 77139 36 100.0 30 .................................... AGAAACAAACTTCGTCTTCTTCCCATTTAT 77073 36 100.0 30 .................................... AAAAAGAACGTGCAGTCGCCCGCGCGCAGG 77007 36 100.0 30 .................................... TTTCTGGAAAAGCATGGAAGGAACTAGCAG 76941 36 100.0 30 .................................... AACATCAGCACACTCAGGAGAGGCTATAGC 76875 36 100.0 30 .................................... ATACTTAACAAACCCCCTGGGAACCTGGAA 76809 36 100.0 30 .................................... AGAAACGAAAGAAACGGGAGTCGCTAATTA 76743 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 14 36 100.0 30 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : TATCGTTTTCATTTTGTATATAAATCATTTTTAATTTATATATAAATCGATTGGGATAAATATATAGATTGTAAGCCCGATTTGATATAAATCGGGCAGCTCAAAAGGCCTTTAGGGGAGGTATAAATAAAGAGGCACCCACCGAGTTCGTGCAGGAACTTGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGGCTCTCAAGCTCTACCGCTCATACAGCAGGCTTGTATCAGCTATACGCGCCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGAAAGAGAGGGATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAGAAAGGGAAAGCACTCCCGGTACAAATTCACCGAAGAGGGGAGCAGCTTGTCCGCCTGCAAATGTAGCGAAAAAGCCCCAACGAGGAAGAATCCCCACACTACTGCACATTCCAACGCCCAAGCCACCAATCAAGAATCAT # Right flank : CTACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAGTGGGATATTAGGATTGAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTGTGCTCCTGCCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATGCTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAATCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 214-3999 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGBA01000045.1 Porphyromonas gingivalis strain CP3 NODE_45_length_19136_cov_302.843, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 214 30 96.7 36 A............................. TTCTTTTTTCTTTGAGATATTCGAACTCACCTCTGT 280 30 100.0 36 .............................. AACGCGGCGATATCTTGGGCTATCAGCAGCGGTTTA 346 30 100.0 35 .............................. GGCAACAGACACGCAGGCTTCTATCGTCTACTGCG 411 30 100.0 35 .............................. AAGTAATCTTGAGGCAGGGAGTTGGAGACTTGTCT 476 30 100.0 35 .............................. TTTCATCCCGCGTCGTTTTGCCGATTATAAAAACG 541 30 100.0 36 .............................. ATACCTTGAACAATGATGAAGCTTTCATCTTGCCCG 607 30 100.0 36 .............................. CGTCTGTCGTAATGATAATACCCTACGCGCTGACCT 673 30 100.0 37 .............................. TTCCGTATGATTCTGCGGACAAACTCATCTCCTTGAT 740 30 100.0 35 .............................. TACCTCGTGATTCATTGCACCGCCACCCCGGCGTG 805 30 100.0 36 .............................. TATCTGTATAAAGCTCTCCGAACAAGCCCTCCTTTC 871 30 100.0 36 .............................. ACAGTGCTACCGTGGAGGCTTGGGGCAGTGCTACCG 937 30 100.0 36 .............................. TTAAGCGAAAGCTGTCCAAACTCCCCTTAGTTTGAA 1003 30 100.0 38 .............................. TAGAGAATTCCCACAAAAGACTACATTAGATAAAACAT 1071 30 100.0 34 .............................. ACACAGCCGCTATCTCTTCCGGCAAATCACACAC 1135 30 100.0 36 .............................. TCCACGCCGCCACGGTAGCGGTGCCCGCAGCCCGAA 1201 30 100.0 36 .............................. TTCCATAAGAGGCATATTCCCCATAACATCTTCTAT 1267 30 100.0 36 .............................. CTCCACTTTTTCTCCCGTTATCCGACACAGATGCGT 1333 30 100.0 36 .............................. AGGAACAATCCCTGCAGCAGAGCACGAACACCCACG 1399 30 100.0 36 .............................. TGTATATTTCTTCTTCGCCAGCGTTGAAAAGCAGCT 1465 30 100.0 36 .............................. TATGTATTCGTGAAAATAACTTGTATCTGTTCTCGC 1531 30 100.0 36 .............................. TGAGTTTTCTTTGTCACAAAAGTTCTAAAATAAAAC 1597 30 100.0 34 .............................. TCGCAAATTCATAAAACATAGCCGCTATCTCTTC 1661 30 100.0 36 .............................. CCAAAAACTCCTCAATCTTTTTATTAAAATGCCTAT 1727 30 100.0 37 .............................. CCCTTAATAATGCTATGAAACGAGATTTATATTTTGT 1794 30 100.0 36 .............................. ATGGGAGTATGTCAAGTCCGGTGATTTAACTGACTT 1860 30 100.0 36 .............................. CGCCATCCATGGAAAAATTACCAAATTCTCCATCGC 1926 30 100.0 36 .............................. TATAGACTTCATCCATTAAGGCTGCCCATTCGGCGA 1992 30 100.0 35 .............................. TTGCTGTATTTCCTCGATCGATATAGATATAGTCG 2057 30 100.0 35 .............................. ACGCTCAAACTCTGCGGCCGAAATGCCTTGCATTT 2122 30 100.0 36 .............................. AAAAAATGTTGCGACAAATAAAATTATGCATCTCGC 2188 30 100.0 35 .............................. GTCCACAGCCTTTTCAAGCTGCTTTGATTCCGACA 2253 30 100.0 37 .............................. TCGCATGCCCGAACCGTTGCGTCGCCCCATGCCTCCA 2320 30 100.0 36 .............................. CAAATTGTCAGGAAACCGCCCTCCCATCGAAAACCG 2386 30 100.0 37 .............................. AATAAATTTTAGCGTACCGGTGTTGCGCCCCTTGCAC 2453 30 100.0 36 .............................. CGCTCCATGCCGCCGATACGCCTTAGCTCTTTGTTT 2519 30 100.0 36 .............................. TCGATTGATTCGGCCGTTAGAGCCGTTGTCTGCCGA 2585 30 100.0 37 .............................. TCGCATGTCCGAACCGTTGCGTCGCCCGACGCCTCCA 2652 30 100.0 36 .............................. CTCTTCAGCTCTATATGGAGTTGCACATGACATTCC 2718 30 100.0 36 .............................. CCCAAGCCTCCACCGTTGCACTGCCCCAAGCCTCCA 2784 30 100.0 38 .............................. TATCTTTCTTTCTGCCATTTGTTAAATAATTATAACTC 2852 30 100.0 36 .............................. CTCCCGTTGTGCTATTTGCCCGTTATCGTAGTTCTC 2918 30 100.0 36 .............................. TCTTTTGATAGAAAAAACCTATTCCGTATGATTCTG 2984 30 100.0 37 .............................. GGTGCGGGTGAAGGTAGCGGAGGTGCAGGTGTGCAGG 3051 30 100.0 37 .............................. GCGAGCGGAAAGAATGAAGGTGTACAACACTCAACGT 3118 30 100.0 34 .............................. ACATAGCCGCTATCTCTTCCGGCAAATCACATAC 3182 30 100.0 36 .............................. GCAACGCAACCGTGGAGGCATGGGGCAGTGCAACCG 3248 30 100.0 36 .............................. CCAACTCGGAACGGTTTGCAATCGCGCGCATTCCGT 3314 30 100.0 36 .............................. CCGACGCCGCCACGATTGCACTGCCCCATGCCCGAA 3380 30 100.0 34 .............................. ATACCTCCCCGGCTTCGCCGGTTAATCCCAGTGC 3444 30 100.0 36 .............................. AAAGGCTGAGTCTATTTCTATTGACTTTGCCATACG 3510 30 100.0 35 .............................. GCAGGAAGGCTTAAGGAATTGGAAAAGAAAATTTA 3575 30 100.0 36 .............................. TTTTTATCCTTGAATGAGTGGGGGATTCCATTTAAT 3641 30 100.0 35 .............................. AACCACCGCCTTTTTCCCTTCCGCGGAAAGCAGAT 3706 30 100.0 36 .............................. ATTGCACCTTCAGCCCGAGCACCTCTCTTTTTATCG 3772 30 100.0 35 .............................. GATACCTCCCCGGCTTCGCCGGTTAATCCCAGTGC 3837 30 100.0 36 .............................. GATTATAGCGGCAAGGTCAGGACGTATGGTTCGCTC 3903 30 100.0 37 .............................. AACCGCATCGACACTGCTGTGTCTGTGCCCGTTGCGA 3970 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 58 30 99.9 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : TAGCGTTTTGTTTGTTCGTATCTTATTGATTGTCAACTGCTAAGATACAAATAATTCGCTACTTTTTCAAGCATAATGCCCACGTTCTTTGGGCGTTTACCACTAATCAGAAAACAAATTCATTGGTGTTTTCTTACGTCGAACTGACGTTAAAAAACAAGCCAAATAACCCCGAAACTAGTTGTCAGTTTTTGGAAGTAGTATAATGGATACA # Right flank : TCCGTTACAAATATAGGCTTTTCTGTTTGAATGTGAGGAGTTTACGAAAAGGTGAAACCCAAAATTCAGACATTCATAGTTGTCGATGTCTGATTCTATGAAAAACCAAGGGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGGAGGTTAATCATGGCAAAAGGCTTGATGAATTTGCTCGAGCCGACGCTTCAAAAGATAGATAGCGGGAGCTGTATCGTGCTGTATTATAGAAATATATCCGTTGCAGAACGCTCTTTGCCAATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCTTCTTTTTCCATAATTCCGGCTGCTCTGCTCTTCAGCTCTAAGAGCTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATATTTTCTGCACAGTTTTAACATTTTGCCAACACGCTTTTCACCGATATCGTACACTAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 1 6451-5824 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGBA01000050.1 Porphyromonas gingivalis strain CP3 NODE_50_length_16514_cov_331.579, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 6450 32 100.0 34 ................................ TTCTGGTAATTCATTTTCGTTAAAAACATTGTTG 6384 32 100.0 34 ................................ TCTTTTACAAATCCGGCTATTTCTTTTACCGTTG 6318 32 100.0 33 ................................ CTCCATTATATCGTGCTTATTTGAAATATGTTG 6253 32 100.0 34 ................................ AAAGACAGAAATGGAATGAAATTCCTCTTTGTTA 6187 32 100.0 34 ................................ GGCACCGATGAGAAAACTTTTTGTCTTCATGTTG 6121 32 100.0 35 ................................ CCTAAAAGTCTTGTTGTTTTCATATTTTCTAGTTG 6054 32 100.0 34 ................................ AAAGACAGAAATGGAATGAAATTCCTCTTTGTTA 5988 32 100.0 34 ................................ GGCACCGATGAGAAAACTTTTTGTCTTCATGTTG 5922 32 100.0 35 ................................ CCTAAAAGTCTTGTTGTTTTCATATTTTCTAGTTG 5855 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 10 32 100.0 34 GGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Left flank : GCTACGTTGGATGAAGTCAAGACTTTGTTGGGCGAATATGATCGCTGCCGCATCAAAATCTTCGATTGGGCATTTGCACTCGAAGGAGCCATCATGTCTGATCGCGACTTGAAGCCGTATTTGCACGAGTCGTCGAGCAGGGAGGGTAAGAGTGGAGAGCATTCTACACTGGTGAAGATGCTGGTGGAGAAGAAAGGCTGTCTGACTCCTGACGAAAGCCAATACCTGATTCTGATTCGCAACAAGGCTGCTCACAACCAATTTCCCTGCGCTGCAGAAATACCTCTTATTTACCGAGATGTGAGTGCAAAGGTCGGTAGCATTGAGGGATCTTCTGCCAAAGATCTGCCGGAAGGTAGTTCTCTGGTAGATTCATTATGGAAAAAATACGAAATGATAATTCGGAAAATTCTTCCGATTCTCGACCCTGAAAATAGATTTTTTGGAAAGCTTTTGAATAATATGTCTCAACCTATCAATGACTTATAAAGGGTCGGTTG # Right flank : TATTATTCCGAAAGGAGAAAGAGGGGAGGTTGTGCTATTGATGGGGAAGTATTCCTAAATTAGCGATTGCTAAAGTGATGGAAGATGGATAGAGGAAGTGTAACTGCCGATTGTGTTGGTGCAGAGCTGTTCGTCCGATCGGGAGGTCTTTCGTTCTTTCCCTTGGCTTTTGTCCGTAAATTTCGATTCTTTTAACTCATATAATTGTCTGTTCCTATCAAACGCTCTCATCTCCTTATCAGTGCTGCTTCATCGGGTGGTGGAAAGACTACTTTCACGCTCGGATTGCTACGCTTGCTTCGAAGGCGCGGTCTCAAAGTGCAGCCTTTCAAATGCGGTCCCGACTATATCGATCCTAAGTATCACCGCCTTGCATGCGGAACGGAAACGGTGAATCTGGATGCTTTCATGATGAGCCGGGAGCATATCGCCCGACTCTATGATCGCTACGGCAGTGAAGCCGATGTTTCTATTGTGGAGGGAGTGATGGGCTTCTTCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //