Array 1 161548-160298 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ819027.1 Brenneria roseae subsp. roseae strain LMG 27714 scaffold6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 161547 29 100.0 33 ............................. AAGGACGGCCATAAGTGCCGCTCGTCAGCAAAC 161485 29 100.0 32 ............................. CGATTTCAATATCTCCCGCCATCATTGCGCCA 161424 29 100.0 32 ............................. CATTCCAGGTTGTGGAAACATACGCGTCCGGT 161363 29 100.0 32 ............................. TGAGTATGGGAGTTCGTCGGCTTTTCAGATAC 161302 29 100.0 32 ............................. CGGAATTGAAATATTTTTAGAAAAACCTGTTG 161241 29 100.0 32 ............................. AGGCATTAATTGAGCGTTTGCCGGCACTTATC 161180 29 100.0 32 ............................. TAGTCTCTCGTTTTCTTCATTCGCACACCCCC 161119 29 100.0 32 ............................. GGGGATATGTGTTACCGGCGTACCGGTCAATC 161058 29 100.0 32 ............................. GGATCTATCTCGTTGTAGTAGGCGGTCATTGT 160997 29 100.0 32 ............................. TATGTGATGATAGACACGGCGGCGAAAGAATA 160936 29 96.6 32 ..........................T.. ATTTCTCTACCTTTGAGAAACTTTTCGAACAA 160875 29 100.0 32 ............................. TAATAACTCAGGGATCTTTGTGGTGAACGAAA 160814 29 100.0 32 ............................. CTCGCGTATCAAATCCCGTAATTCTGCAAACC 160753 29 100.0 32 ............................. TGGAGCTACTAAGAATGACGAGCCTTGATATC 160692 29 100.0 32 ............................. CGCTAGCCATCAGAATGCTCACCACGACATGT 160631 29 100.0 32 ............................. ATAGATGTCTGATATTTGCAGATTGGAGTAAT 160570 29 100.0 32 ............................. TACTGCGGCTGCTTTGAATTCGTAGAAAAACT 160509 29 100.0 32 ............................. GCTAACCAGACCTTAGCCAGTTCTGTATACAT 160448 29 93.1 32 ...........AT................ CTGTTACCGGCTTCGACGATGAACAACCGGGG 160387 29 96.6 32 ..............T.............. TTGCCGATGACCTGGCCGGCTTTGGCGCGTTT 160326 29 75.9 0 ..........TA..AA..........AAA | ========== ====== ====== ====== ============================= ================================= ================== 21 29 98.2 32 GTATTCCCCGCGCCCGCGGGGATAAACCG # Left flank : CATCGAAGACGTGCTTTCTGCCGGAGGTATCAACCCGCCGCTGCCGCCTGAAGACGCGCAACCGCCAGCCATTCCTGAGCCCAAAACGCTTGGTGATATCGGACATCGGGGGCATCGCTGAAATGAGTATGTTAGTGGTTGTGGTAGAGAATGCACCGCCTCGTCTACGCGGACGTTTGGCTATTTGGCTGCTGGAGGTGAGGGCGGGCGTCTATGTCGGCGATACGTCGCAGCGCATCAGGGAAATGATTTGGCAGCAAATTGTTGAATTGGCTGAACAGGGAAACGTGGTGATGGCATGGGCAACGAACACCGAGTCCGGTTTTGAATTTCAAACCTGGGGAGAAAACCGCCGTATGCCGGTAGACCTGGACGGACTGCGGTTAGTCTCATTCTATCCACCTGAAAATCAATAAGTTATAGTTCTTTAAAAATAGGGAAAGTTTGGTGGATTTTATCCTTTCAAATAAACCTTTATAAAACAATACACTACACTTAGT # Right flank : CGATTCTTGACTGGCAGTACCGGATTGATGCGAGTGGTTCCTGTATCCGATGCCGAGCCTGGCGGCGTCTGGAATGAACGCGTAGCAGAGGGCTATGCTTCGATTATGGAGTGGTACTCAACCCCGACATCAGGGCACAGGGTCCGAAGCAGGTCAAGCAGGTGATCCAGCCCGGCTTCCATAACGGCATGCTCGATGCCGGGGACGCCGTCAATGAAGAAAAGTACGTCACGGGTAGTGTCGGTAATGCGCGACTTGTCGTCCTGGCCGTAGATAATGCTCAGGATGATGCCATCCCGGTCTTTGAGGCAGATGTCATTGAGCTTCGGCTGAACATCACGGTCGCCGGCTGCCAAATAGTGCTCGTTACCCTGCGACACATCAATGGTCAGCGGCAATGTCAGATGTTGCAGGTCATGGCCGGCAATCAACAGTGACGTGGTGAGCTCGGCCAATAACAGCGCCTGTATGAGTCCCGGAGCGTCAGGCAGACTTTTCCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCCGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 165199-164391 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ819024.1 Brenneria roseae subsp. roseae strain LMG 27714 scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 165198 28 100.0 32 ............................ GTCTTCCCCATGATCTACTCCTGTATATGGAT 165138 28 100.0 32 ............................ AGAGCGTGTGGTACTTGCATGTTAAAACTGGC 165078 28 100.0 32 ............................ TTATCGCGTGGCTTGAACATTACCGCCCGTCT 165018 28 100.0 32 ............................ GATGTATCAGCAATAAACGCTGCACTTTCCGC 164958 28 100.0 32 ............................ CGGTATCGGCGGCGGTGTTGTCATGTTTGGCC 164898 28 100.0 32 ............................ AATGGTGGCGAACTCACCGATCAGATCGGCTT 164838 28 100.0 32 ............................ ACAACGATTACAACAACCTGATCGACAAATAA 164778 28 100.0 32 ............................ GAACGCGCAGAGCGTGAGAAGCGGGAAGCTAT 164718 28 100.0 32 ............................ AACAGCAGGTAAACGCCGCCAATCAGGCGGAA 164658 28 100.0 32 ............................ GTAATCGAGACAAGAGCGTCGTTTTCCGGCTT 164598 28 100.0 32 ............................ TCCAGGGAGCGTTCATTACGGACCGCAGCTTC 164538 28 100.0 32 ............................ ACGGCATTACCCTGAAAGATGGCGAGAAACGC 164478 28 96.4 32 .............C.............. TAAAAGGCCTTCTAAAACCATTTAAAGGTAAC 164418 28 89.3 0 ......C......C......T....... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 99.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TACAACGACTGGTTTCCCTCTTCCGTGACATATTCTACCCGACCACCATTAACCAGAATTCGGCAGTGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATCGTTTTTAAATCTGAAGGACTAAAGACATTATCCATAATATATTCTCTGTCGCAGCGATAACTATAATGACACCGACGAAATAAATCGCAGACTAATTATTTAATAGAGAAATTTGTCATGCTCTGGAAACGACACCCAATAAATTTCGAATTGCGGGGGAGACAATGTCCCTGCGATAGGAAAGATAAAGGATAGAGAACTCAGATTAGCACAGTGGTGCGATGGAAAGTTACTGCCACAAATAATATTCCATCAGTGATGACCCTTTTTTATTTGCCTGACTTATACGTATTAATAATCAATAAGTTATAAGAAGCCTGGAAAAAAGGGGTTGGCATATAAAAATGATAATTGCTGCTGATAAAACAAATCGTTAAAGTGAAAAGGCTACG # Right flank : CACACGCTGGATTGGCAGGAAAGAATAACGGTCATGCACTGCTGTGCATGACCGTTATTCCCTGTTAAAAAAGAACCACCGGATTAACCAAATCCATAATTGTTATGAATTACGGGCCGGTTAAACCCGGTGGCTTCGAATATTCTATTCGTTGTTTACTGAATGGCTGCAAAAGCCGCTGCAACGCGCTGGACGTTGCCGTGGTTCAGGCCCGCCAGACACATACGGCCGCTGGCAATCAGGTAAACGCCAAACTCTTCGCGCAGACGATCAACCTGCTCCGGGCTGAAACCCGTGTAGCTGAACATACCGCGCTGGGTCAGCAGATAATCAAAGTTACGGTTTGGCAAAGCCGCTTTCAGCGCGGTGACCAGCGTCTGACGCATTTCAATGATGCGCGAGCGCATCTCTTCCACTTCCGCGCGCCAGCTGGAACTCAGTTCCGTATCGTTCAACACTTTGGAAACGACCTGCGCCCCGAAATTCGGCGGAGAAGAGTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 174174-175281 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ819024.1 Brenneria roseae subsp. roseae strain LMG 27714 scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 174174 28 100.0 32 ............................ GCCTCGTTCCCTTCAATATTTCCTGACTCGAT 174234 28 100.0 32 ............................ ACTGGTATAGCTGCGGGAATATCTTTCCCTTC 174294 28 100.0 32 ............................ AACCAGCTCAATGCATATCATGAAAACAAGCA 174354 28 100.0 32 ............................ ACAGAAGAAAAGAACGATCTGATCACCGAAAT 174414 28 100.0 32 ............................ ATCAAACCCGTCAAGCCACGCCGACTCAATGA 174474 28 100.0 32 ............................ TCAACATCGTGACCTCGCAGTTTAAGAACCGG 174534 28 100.0 32 ............................ TTTCCCAGCGGACGGTATTACTTTCTCTGTTT 174594 28 100.0 32 ............................ TCTGCCGTGTCGATATCCAGCATGCTCTGAAT 174654 28 100.0 32 ............................ CAAAGCGCTCGCTAATCTGGATGTCGTAGTAA 174714 28 100.0 32 ............................ GCAATGAAATTGAGGGGTATGAGAATGGTGAT 174774 28 100.0 32 ............................ CCTCAATTGTCCTCCCCTGCGCCTTTCCACTC 174834 28 100.0 32 ............................ TTTCATTGCAGACGACGCAAGCGCGCCTTGAA 174894 28 100.0 32 ............................ ACTGCCGCCACGGCCATCAGGAACCAATTGAT 174954 28 100.0 32 ............................ TATCGCTAACTATTCAGCAGGTATCTTCTTAC 175014 28 100.0 32 ............................ GGCCACGCAGAAGGCCGTTTTCAACCCATCGT 175074 28 100.0 32 ............................ GAAAGTCCCGGCCAAATCATCGCCCAAATACA 175134 28 100.0 32 ............................ AGTTCAGCCAGCGAGCCATAGCAGCAATAGAT 175194 28 100.0 32 ............................ GGACGGGCAGACGGTCACAGTAAAATCGCAAT 175254 28 82.1 0 .............C......AAC.T... | ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.1 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : ACAGCGTTATCGACACTGGAGCAAACCGGTTGGTTGAAAGGGCTACGGGATTACACCCGAATTTCCAAACTCCAGGCCGTACCCGATGGCGTGAAATTTCGCACCGTGCGTCGCGTTCAGGTTAAAAGCAGCGCCGAAAGGCTACGCCGCCGTTCGGTTAATAAAGGGTGGCTTACCGCTGCTGAAGCCGCTGTGCGGATTCCTGATGCAGTAGAGAAACGTAGCAAACTGCCCTTTGTGCAACTAAAAAGCCTTTCCAGCGGACAAATGTTTCGACTGTTCGTTGAGCATGGACCACTACAGGATACTCCCGTCGCAGGTCGTTTCTCCTTCTATGGTCTAAGCACAGAAACCACCATCCCCTGGTTCTGACCCTTTTTTTACGGCCGACTGCAACTGATTGATTTCAAATGCAGTTGGCCTTCATAACAAAAAAGGGAGTTTTGCAAAAAAATGCGTATTTTCTTTAAAAATCTGGTGATTAGTGTAAAAAACTAACG # Right flank : AGCCGCTTTTCTTCAATGAAAGCGGATTAGCATGGCTGGATTAGAACGAACGTCAGTTCTTCGAACTATTCGTCGTTTTACCCGCAATGGTGACAAGCGCCAACGCGTTGTCCGCTGGCAGAATCCGCATTCCCGGTGGGTCGCCCGCCTAATGGAGAAATCACTGTTTTTATATCAACTGAGTAATACATTAGCATCGTGGAGGTTAATCAATTTTGATAAGAAACCGCTGGAAAGAATAAATTAAGCTGGGCTCAGAATAATACGCATTAACTATCAATATAAAAAACATTCTTCATTTTGTGAAAGTGCTAAAAATACAATAGAACTTCAGCTCAAATGAGTAGCAGGTGAATTTTCGTTTATTCATTACCGTTATTCCCCCTGGATAGTGATAATAAGCGTCCTGCTATCGCCATGATTACGATGCTCACATAAATAAATTCCCTGCCAGGTCCCCATATTTAAGCGTCCGTTGCTGATCGGAATAGTTAAATTAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //