Array 1 45546-47066 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJLJ01000011.1 Escherichia coli 2-005-03_S4_C3 e200503S4C3.contig.10_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 45546 28 100.0 33 ............................ AGGAAGATATCGATTTGATTATTGGAAAAAGTT 45607 28 100.0 32 ............................ TCAGAAATCGGGACAGGATGTGGGAATGTCGG 45667 28 100.0 32 ............................ AAACTGAGGAACAATTCCGGTTTTATAGTCAC 45727 28 100.0 32 ............................ GAGTTTCGAATGATATGACAAATCTAAATAAG 45787 28 100.0 32 ............................ TGGGATATTCCGGCGACCTGGTACGGGGATGT 45847 28 100.0 32 ............................ AACTTCGTTAACAGCGACTGCCGAAGCCGTAT 45907 28 100.0 32 ............................ TGTTTGAGCTTCAAATTGCTCACCTGTTTCTA 45967 28 100.0 32 ............................ GATAAAAATAATATTGGTTACTCCACGATAAT 46027 28 100.0 32 ............................ GATCTCAGTGCGGGACTCTGCTTTCATCTCTC 46087 28 100.0 32 ............................ GCCTCAAAATCCCTTGCGTGTTTTTGCTCCCC 46147 28 100.0 32 ............................ ATAAAGATAATAACACAATCGTGTCTGGATTT 46207 28 100.0 32 ............................ AGGAACCGCGTCAGCCCCCTGCAACGCTCATT 46267 28 100.0 33 ............................ TGGCGCGCCTGGAGGACATCCCGGAAGACCAGC 46328 28 100.0 32 ............................ GGTAACGGGTCAGGCCGACCGTGGAATACCGC 46388 28 100.0 32 ............................ GCCTGCAACCACTGATTGAGAGCTTCACACAT 46448 28 100.0 32 ............................ ATAAAGCGATCGACGCGGTTCCAGCCATAGAA 46508 28 100.0 33 ............................ TGATGCATCACAAACGGGAAGGGTAACGGGCGA 46569 28 100.0 32 ............................ AGACATCTGCTCAATAGAACGGGTGATCTCAA 46629 28 100.0 32 ............................ AGATCCAGTTCATCATCCAGCGCAGACTCTTG 46689 28 100.0 32 ............................ CGTCACCCGCGCAGCAGTCACACGGGCGCACG 46749 28 100.0 32 ............................ ACCGCCGGGGCGGTTTCCCCGATGAAAAGGAA 46809 28 100.0 32 ............................ GTGGCGCTAGCAATGAGATTTGCGGAAAAAAG 46869 28 100.0 32 ............................ GTGCTGCCCGCCAGCGTGGCGTAATTGTCACA 46929 28 100.0 32 ............................ AAAAAGTTGCGCCGCGTGACCGGCACTATAGA 46989 28 100.0 20 ............................ CTGAACGTTGAAGAGTGCGA Deletion [47037] 47037 28 78.6 0 CC..................A...C.CT | T,C [47055,47059] ========== ====== ====== ====== ============================ ================================= ================== 26 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 56126-57535 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJLJ01000011.1 Escherichia coli 2-005-03_S4_C3 e200503S4C3.contig.10_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 56126 28 100.0 32 ............................ AAAAGGGATAATGTGATTACTTATTTCAACGT 56186 28 100.0 32 ............................ TGGAAGGTACGCGCTGTTTTATTTCATTATTT 56246 28 100.0 32 ............................ AACGTAGTGAGCGAGTGGGCGAGGAAGCGGAA 56306 28 100.0 32 ............................ TCGAGGTACTCCTTATCCTTCGGCCGCTTTCC 56366 28 100.0 32 ............................ GCGCACGCTCGCTCAGACATTCCCCACCTGGT 56426 28 100.0 32 ............................ CGAAGCGCGGCGCAGCCGCTGACGAACGTACC 56486 28 100.0 32 ............................ TGAACGCTATCATCTTCATAAGTCACCCCAAC 56546 28 100.0 32 ............................ AGCAGCCCCAATCCCTAAAAGAGCCATTCCCT 56606 28 100.0 32 ............................ TTCCATGCCCTGACGGACATTTAAAACCCGTT 56666 28 100.0 32 ............................ CAGACGGTTTCCGGTTGTGCTCAAGGCACTGC 56726 28 100.0 32 ............................ CATTCCGGACTGGCATCAATAGCAACCGGAAT 56786 28 100.0 32 ............................ GGAACCGTGGCGGCTCGGTGGTTCTAGAGATC 56846 28 100.0 33 ............................ GGTACCTTGCAGGCTCAAAAATTGCTTGATTTT 56907 28 100.0 32 ............................ TCTTGCGTCCCCTGAAATACATCAGGGGATTT 56967 28 100.0 32 ............................ TTTTGGGGATACCTGTGTAAACCTTGAATTCT 57027 28 100.0 32 ............................ TTCAGCAGCTCTCGAACACGTTCCCAACCTTT 57087 28 100.0 32 ............................ ATGCGGTTGGTAGGTGGTCGTAGACCGTCAGT 57147 28 100.0 32 ............................ GTTCCGTATACCAGTGATATGCAGAAGGAACA 57207 28 100.0 33 ............................ AGGAGCATTGGCGGAGGGAACGCGAGCGCGGGT 57268 28 100.0 32 ............................ GAATCTCGGCGCGACGGCACCCGCCACCGGGG 57328 28 100.0 32 ............................ AGTTCGCGGCAGACATACACGCCGGGAGTTTT 57388 28 100.0 32 ............................ CAGCGGGGTGATTGAATATTTTGGCATCAGAC 57448 28 100.0 32 ............................ TTTCTGCTGTTATCGCCGGGTTGCACGAGTGC 57508 27 92.9 0 .......................-C... | T [57528] ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTATGCGCGCCATGCCCACCGCATACAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATATAGATTGATTCGTTTGGTTACGCAATGAACACACTGTTGGTGGGACGGAGATTATGACTGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAATCGTCCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTGTTTACTGCTATTTTGAAGTCTGGAAAAAGGGGGTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //