Array 1 23869-22131 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNJZ010000025.1 Parabacteroides johnsonii strain D43t1_170807_H1 NODE_25_length_57556_cov_24.2568, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 23868 47 100.0 30 ............................................... TACAATAAGTCATTTACCTATTTTTGTGTC 23791 47 100.0 30 ............................................... TAGGATTCAGAAATTCCTTCTCATAAAAAG 23714 47 100.0 30 ............................................... AGTTACATTGTTTCCGTTCCTGTCGGCTCC 23637 47 100.0 30 ............................................... GATGATTTTTCTTTGTTCTGTTTGTTACTT 23560 47 100.0 30 ............................................... TAGTTGTTATTATTAGTTCTTTTCTTTGAT 23483 47 100.0 29 ............................................... TCGAAATTATAGATTTTACCTTCTTCGAG 23407 47 100.0 30 ............................................... CGAACATGCACATCGATGTACTTGCTCAAA 23330 47 100.0 30 ............................................... AGCATACGATACTTTCCATTGCCTAAATCA 23253 47 100.0 30 ............................................... GGCATCATCATCATCGTCTATGTTTAGGTT 23176 47 100.0 30 ............................................... TTAGTACCTTTTCATCATCTTCGTCTGTTG 23099 47 100.0 30 ............................................... CTGTTACCGTACCGGCATTTCCTGTAGCTG 23022 47 100.0 29 ............................................... TGTGTTCTTGAAGGCAATTTCTTTTTCTT 22946 47 100.0 30 ............................................... CTTCCAACTTTCCTTTCAGAACGTTTAGCT 22869 47 100.0 30 ............................................... AATATTTCTATTGGCAACAATGGCATTTCA 22792 47 100.0 30 ............................................... CCTGTCCGTTAATGATACCTGCCTGTTGGA 22715 47 100.0 30 ............................................... GATGCGGTTCTTTGATGACTTCACCTACGA 22638 47 100.0 30 ............................................... GTTGTATTGTAGATTTCCTGTGACATTCCT 22561 47 100.0 30 ............................................... TCATACATTACTTTTTGCTCCATAATTATT 22484 47 100.0 29 ............................................... TATGCTTTAGCAATTATCAATAATTCGAC 22408 47 100.0 30 ............................................... ACGACCCAATTTTGGAAGCTATGCCAATAC 22331 47 100.0 30 ............................................... TATATATAAGAAATTTCTTTGTGTAGGGCT 22254 47 100.0 30 ............................................... CCCTACTTTCCTATTATGCTATTATGCTAT 22177 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 23 47 100.0 30 GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTGGAAACAAC # Left flank : CGCCAAGCTGTACGCAAAGGACCGTGGAAATTGGTCCACATGAATATCCGTGGTGACAAGCCCTATTATGAATTGTATAACTTAGCTTCCGATCCATCGGAACGGCATAATATACTGGATCAGTATCCTGAAAAAGTAGCGGAACTGAAAGATATCATGGTTCGTGAACACAGATCGGACCCAAACTGGCCGCTATTACCGAGTGAAAAATAACCTCCCAAAAAGTTTGTTTCCAATAACAAAAATGACCTCTTCCTGCTTAACGAGTAGATTACTATTTACTCGATAAGTAGGCAAGAGACAACATATCAGATCTTAGTATATAGTAAAATACTATGAACAAAAAATCTTAAAGTATCTGATATTAGAATTAATGGTTGGGATCTTAGGAATCATAGTCCTTAAGTATATGTTGGTATAGAAAAAATTTCATAATATGGCTAATTATAAACATATTCATATTTGTAGAGTATTATATACTTTGCATCTACATCTCCAAA # Right flank : TGATTTATCATTATCAATTGTTAATCAACAAATTACACAGCAAATTAGAATAAAAAATGGATGTTGTTTCAAAGAAAAAATCCCACTATTAAGCGGGATTTTTCTTTTTAAAACAGTTCTAACTGCTGCCCTGGAATACTCACCTCCATTGTCTTTTTACCATAAAACAGTTCGATATTTCCAAACTGTTTATCCGTAATACACATAATTCCGACACTTCCATGCTCTGGAATAAACGATTTAACCTTTTTTATATGCACAGTTGCATTCTCGCTACTGGCACAATGACGGACATAGATAGAAAACTGAAACATTGTAAATCCATCCCTTTGCAGATTCTTTCTGAAATCAGCATATGCCTTTTTCTCCTTCTTCGTTTCAGTAGGCAAATCAAATAATACAAGTACCCACATAACACGATATTCGCTAAATCGGTCCATAACTACATTTCCGGATAAGAAATTTTGCGCAACTCTCCACTAAAGCACTTATACAAGGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //