Array 1 941711-943185 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034734.1 Escherichia coli strain L53 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 941711 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 941772 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 941833 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 941894 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 941955 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 942016 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 942077 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 942138 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 942199 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 942260 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 942321 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 942382 29 86.2 12 ...............C.A.C.....G... CAAACAGAGCCG G [942406] Deletion [942423] 942424 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 942485 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 942546 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 942607 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 942668 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 942729 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 942790 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 942851 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 942912 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 942973 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 943035 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 943096 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 943157 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.0 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 967643-968830 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034734.1 Escherichia coli strain L53 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 967643 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 967704 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 967765 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 967826 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 967887 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 967948 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 968009 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 968070 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 968131 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 968192 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 968253 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 968314 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 968375 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 968436 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 968497 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 968558 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 968619 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 968680 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 968741 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 968802 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //