Array 1 4369129-4370806 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026609.1 Salmonella enterica subsp. enterica serovar Derby isolate 2014LSAL01779 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4369129 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 4369190 29 100.0 32 ............................. GCTTCTGATTGCATTAGCTCCAAATCAGTACC 4369251 29 100.0 32 ............................. GCGTCAGGCGTGGTGGCCGTGATTACGGACGA 4369312 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 4369373 29 100.0 32 ............................. GGCTAACCCATGAACACTATTACCAAATTCAC 4369434 29 100.0 32 ............................. GTTGCCGCCCTTACTGCGCGAGGCGTTGGAAC 4369495 29 100.0 32 ............................. GAGGGGCCGTCTGCCGCATATCAAACGCTATC 4369556 29 100.0 32 ............................. CAACACGAAAGAAAAAATACTCAATATTATTG 4369617 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 4369678 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 4369739 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 4369800 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 4369861 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 4369923 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 4369984 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 4370045 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 4370106 29 100.0 32 ............................. CTTGCAGCCGAATACGGTATAGAGTGGGACGG 4370167 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 4370229 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 4370290 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 4370351 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 4370413 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 4370474 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 4370535 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 4370596 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 4370657 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 4370718 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 4370779 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4387065-4389046 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026609.1 Salmonella enterica subsp. enterica serovar Derby isolate 2014LSAL01779 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4387065 29 100.0 32 ............................. TTGAGGTTTGCGTTGAGCCTGTTCAGCATCAC 4387126 29 96.6 32 ............................C GCTGACTCTGCGGCGGATCTTCTCAACCAGTC 4387187 29 100.0 32 ............................. CCTAGAAAAGTTTGTTTAGGCAATCAAGCCCC 4387248 29 100.0 32 ............................. GTGTTAATTAATGAGTTTATTCCGTTTTAACA 4387309 29 100.0 32 ............................. AAATTTGGTTGACAGTAAAAGAGTGTGTCGGT 4387370 29 100.0 32 ............................. TCGGCTCGAGCACTTGCGACAACAAACACACG 4387431 29 100.0 32 ............................. GCGTTGAACTTGATATTCTCTACACCGATGCA 4387492 29 96.6 32 ..C.......................... ATATGAGGCAGCTCGCTGGCGGCTGGGATGGT 4387553 29 100.0 32 ............................. CCGTTTTTTTCCCACAGTTTGCCACCGAGACG 4387614 29 100.0 32 ............................. TTAAGTCGCTCTTTGTACGCTACACCGGAGGC 4387675 29 100.0 32 ............................. AAATATCCAGAGCTGGGCTTGAGGCTGACGGT 4387736 29 100.0 32 ............................. TAATTGACATACATTCACCATATTAAGGAAGA 4387797 29 100.0 32 ............................. CCATGCGCGGCGGCGCTTGCCCAGCTCAGAAA 4387858 29 100.0 32 ............................. GTAGTCTTCATATGCAGCGACATCATTGCCGA 4387919 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 4387980 29 100.0 32 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAG 4388041 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 4388102 29 100.0 32 ............................. CAGGAGTGGCTGGAGACTGTCGTCAAGCCTGA 4388163 29 100.0 32 ............................. GACCTATCAGCCTAATTTCCGGGGCAAGAGCT 4388224 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 4388285 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 4388346 29 100.0 32 ............................. GCGTTTATTTTTGATTTGTTATTTGGACGTTA 4388407 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 4388468 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 4388529 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 4388590 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 4388651 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 4388712 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 4388773 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 4388834 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 4388895 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 4388956 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 4389017 29 96.6 0 A............................ | A [4389043] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTCAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //