Array 1 2035-2735 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYXL01000049.1 Salmonella enterica subsp. enterica serovar Lubbock strain 12TTU07-4-42-1 NODE_49_length_34493_cov_17.1934, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2035 29 100.0 32 ............................. CGGGTGATTTTAATGATGTGCTGACTACCGGC 2096 29 100.0 32 ............................. GCGTTCTACAGTAAGGTTTACAGCCTGAGCAA 2157 29 100.0 32 ............................. GTACGGAAATTTGTGTCAGATATTGCCGGGAA 2218 29 100.0 32 ............................. TGCCCACAGTTCGTCGTGAATTGCGCAGGATA 2279 29 100.0 32 ............................. GTTCTCAATAAATTTTCCCGGCTGCCGGATCT 2340 29 100.0 32 ............................. ATTGGGACCATTCCAATGGTCAGTTTCACGGA 2401 29 100.0 32 ............................. AAACCAGAATTGCTGAAGTAAATTGCAAAAGA 2462 29 100.0 32 ............................. ATATCGAACGGGTTACGGCTGTCGGTGTAACT 2523 29 96.6 32 ............T................ ATATTTTGGCAACTCGTCGTACATTATCGCCA 2584 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 2645 29 100.0 32 ............................. TCTTTGTGGTAAATATGGAATCGATTAACCCC 2706 29 100.0 0 ............................. | A [2733] ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTTCTCAGCGGGTTGATACACGCAAAGAGGTTGAGCGCAGCGTAGATATTGGCTGGCTACATAGTGAAGAGGCGTGTCTTGAACATATAGGTGAAGCAGTGGAAAAAGGAAACTGTATCGCCTGGATACGTAACTCCGTTGATGATGCGATTCGTATCTATCGCCAGCTTCAACTGAGTAAGGTCGTCGCCACGGAAAACCTTTTACTCTTCCATAGTCGCTTTGCTTTTCACGATCGTCAGCGGATTGAGTCGCAGACGCTGAATCTCTTTGGCAAACAGAGCGGCGCGCAACGTGCCGGTAAGGTCATTATCGCCACGCAGGTCATCGAACAAAGTCTGGATATTGACTGCGATGAGATGATCTCTGATTTAGCGCCGGTGGATTTATTAATTCAGCGGGCCGGTCGACTACAGCGTCATATTCGCGATCGTAACGGTCTGGTGAAAAAGAGTGGGCAGGATGAGCGAGAGACGCTAGTGCTGCGCATTCTTGC # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5323-6632 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYXL01000116.1 Salmonella enterica subsp. enterica serovar Lubbock strain 12TTU07-4-42-1 NODE_116_length_14002_cov_16.3237, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5323 29 100.0 32 ............................. CCTTCGTTATTTACGACATTAACATTAACCGT 5384 29 100.0 32 ............................. CTTAATGCTTTTTCGTCCGCCCATAGAAATAA 5445 29 96.6 33 ...................A......... GTATCAAAGGTCATCAGGTGTTCGCCTTTCAGC 5507 29 96.6 32 ............................A GCAGATTGGTATCTGGTACGACGACTGCCGCC 5568 29 100.0 32 ............................. ACTGTTAAAATGCTTCAGGACGGTGAAGTAAA 5629 29 100.0 32 ............................. TCCACTGTACCGCCGACAGGACTTTTTAACGT 5690 29 100.0 32 ............................. CGCAGGCGCTGGACGCGCTGCACAGACAGTCC 5751 29 100.0 32 ............................. GTGCGGTCGAGGTGGCGAGGTTGATAGCAGTA 5812 29 100.0 32 ............................. CGAATATGTTGATCGGGATTCTGGCCGCACTG 5873 29 100.0 32 ............................. CGTTTATCGCTCTGAGAGTGGCGCTCGTTACT 5934 29 100.0 32 ............................. GCGCTGACCATGATTGCAGTCAGGGTCGGCAT 5995 29 100.0 32 ............................. GGGGAATGATGAAACGAATTAGTAAAAACAAA 6056 29 100.0 32 ............................. AAATGGCATAGCCACCCCAGACAGTGGCTTCT 6117 29 100.0 32 ............................. GACCGATCCGGGAACAACCGGAACAACGCGGG 6178 29 100.0 32 ............................. CCAGTAACGCTGGCGTGATAATTTTGGTCGCC 6239 29 100.0 32 ............................. CAATACGACTGGACTGGATTTGATTCATTAAC 6300 29 100.0 32 ............................. CAGAGCCTGGAGCTCTCGACTCCTGATTTTGG 6361 29 100.0 32 ............................. GGGTAACGTCCTTTGCTGGTGTTTTTGTGTCT 6422 29 100.0 32 ............................. AAACACCAACATTACGGCACGCAAGAGGTTAT 6483 29 96.6 32 ........T.................... GTTGGAGGGCGGTTCTGATGGCGAAACTTATC 6544 29 100.0 32 ............................. TACCAACAATTCAGCGTTACGCCAACGGTAAC 6605 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACACTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //