Array 1 2897438-2897109 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP064855.1 Erwinia amylovora strain Ea1/79Sm chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2897437 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 2897377 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 2897317 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 2897257 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 2897197 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 2897136 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : GGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCAA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2909007-2906901 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP064855.1 Erwinia amylovora strain Ea1/79Sm chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2909006 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 2908945 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 2908884 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 2908823 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 2908762 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 2908701 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 2908640 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 2908578 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 2908517 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 2908456 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 2908395 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 2908334 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 2908273 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 2908212 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 2908151 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 2908090 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 2908029 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 2907968 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 2907907 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 2907845 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 2907784 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 2907723 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 2907662 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 2907601 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 2907540 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 2907478 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 2907417 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 2907356 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 2907295 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 2907234 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 2907173 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 2907112 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 2907051 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 2906990 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 2906929 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.2 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : ATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2922077-2919914 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP064855.1 Erwinia amylovora strain Ea1/79Sm chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2922076 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 2922015 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 2921954 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 2921893 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 2921832 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 2921771 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 2921710 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 2921649 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 2921588 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 2921527 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 2921466 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 2921405 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 2921344 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 2921283 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 2921222 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 2921161 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 2921100 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 2921039 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 2920978 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 2920917 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 2920856 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 2920795 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 2920734 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 2920673 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 2920612 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 2920551 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 2920490 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 2920429 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 2920368 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 2920307 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 2920246 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 2920185 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 2920124 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 2920063 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 2920002 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 2919941 28 93.1 0 ...........A........-........ | ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.2 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : CCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //