Array 1 237126-240932 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSFQ01000001.1 Bifidobacterium pseudocatenulatum strain AM43-10 AM43-10.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 237126 29 100.0 32 ............................. TGAAAATATCCCTGATTGTCTGTAATTGCTCG 237187 29 100.0 32 ............................. GCCAGTTCTTCACCGGAGTGCTGCCCGGCCAG 237248 29 96.6 33 ............................T CATCGATTGATACGATATCCCAAACATACCGTA 237310 29 100.0 32 ............................. AATTACTAACGAAAGGAAAAACAATGTTTCCA 237371 29 100.0 32 ............................. GGTTGGCGTTTTCCGGTGAACAATTCCAATGG 237432 29 96.6 32 ............................T CATACTATGGAAGCACCGTTAAAGGCCAATTT 237493 29 100.0 33 ............................. AACGCTTACGCTCAGGCACAAGTCGGCACGCAG 237555 29 100.0 32 ............................. CCATGACGAAGCAGTAATGAAAGCCCTCCTTG 237616 29 100.0 32 ............................. TGCGGGGTGTGTCGAAATCATAATCGTTCGTA 237677 29 100.0 32 ............................. GGCGTACATGCTCAAGTCCTGTACCATTATTC 237738 29 96.6 32 ............................T GCTCGTGCCTCAATGGCACGGTCATTACGTAC 237799 29 100.0 32 ............................. CGCCGAAATCCTCAAGGTTACCGCTCAGGCTA 237860 29 100.0 32 ............................. GTTCTGCACGCTCTCCCGTGACGCTGGCGTGC 237921 29 100.0 32 ............................. GTAGTTCGGGGACTATGCGGACAATAAAAGTC 237982 29 100.0 32 ............................. GGAGCCTGATGCGACAACATAGCGCCGATAAG 238043 29 100.0 32 ............................. GCATCATTTGACATCACGAATTTTCCAACGTT 238104 29 100.0 32 ............................. ACGATATCCAGCTCGGCAACGCCTATGTCGAA 238165 29 100.0 32 ............................. ATGTCTTCCGGAATCGGAATAATGCGATACGG 238226 29 96.6 32 ............................G ACTCAATCGACTCACCAGCACAAGAGGCTATG 238287 29 100.0 32 ............................. GCCGCAGCCTGACGAGGCCGAGCCGGATCATA 238348 29 100.0 32 ............................. GTCTGAACGAGTTTTCGGGCGTGTCGCAAGGC 238409 29 100.0 32 ............................. GACGAACACCAAGACACTATCGAATTACGAAC 238470 29 100.0 32 ............................. CTCGGCAACCAGCGGACCATGCAGCTAGCCGA 238531 29 100.0 32 ............................. ACAGCAGGAATGGTTTGACAAACTGGACGGCG 238592 29 96.6 32 ............................T TGTATTGCGGCGGCTTTATCTGTTTGGAATTG 238653 29 100.0 32 ............................. GTTATTTGGAGTTGACGCTTTTCGAAAACGGC 238714 29 96.6 32 ............................A CTTGCGTTGCGCGGAAATGTACAGCTGATTAA 238775 29 100.0 32 ............................. GCGCGTAAGGCCGCGCACTGGGATAACCAGAG 238836 29 100.0 32 ............................. GGCTGAACCGTCGTAAAATACCGCTGTCTTGG 238897 29 100.0 32 ............................. GCGCCATGGAATTTCATAATCGGCGCACGTGG 238958 29 100.0 32 ............................. GCGCCATGGAATTTCATAATCGGCGCACGTGG 239019 29 96.6 32 ............................G GCACTGCTTGTGGACAATACGGTGGATAACGC 239080 29 100.0 32 ............................. GTGTTGGAGAGTGCTTGCGAATTGCTGGACAC 239141 29 100.0 32 ............................. CTTGCCACCGGCACCGCCAATGCCGAACATGT 239202 29 100.0 32 ............................. AAATACAACAAGGGCAAGCTGTTCGCCACCAT 239263 29 96.6 32 ............................T CTCAGCAATATAATCCGCCATGCCCGACTCAC 239324 29 100.0 32 ............................. GGGGGAGTTCGTGGTTTCCAACATTTCGTCCC 239385 29 100.0 32 ............................. CGGCCGGTCGGAACCACATGCACCAGCTCTCC 239446 29 100.0 32 ............................. TGGGTAGGCAAAGGCCTGTTCTGCATCGATTG 239507 29 96.6 32 ............................T ACCGTGGCGAGACCCTGCACATCAAGCGCCGA 239568 29 100.0 32 ............................. AGCATTATGACACAATCCAAAATCATGCACGC 239629 29 100.0 32 ............................. AAGATGACAACGATACTCATACATTCCATCAT 239690 29 100.0 32 ............................. GCGGACGCGCTCATGCACCGGTTCTATCGTCT 239751 29 100.0 28 ............................. ACAAAAGAACACACACACAACAGAACAG 239808 29 100.0 32 ............................. TGCAGGGCGACGACATGCTCCAGCTCATGGGA 239869 29 96.6 32 ............................T CGAATCGTTGACCGGTCAGGTCGATAACGCCA 239930 29 100.0 32 ............................. GGGGGATGCAGCCGATTCTACGCCGATGCGAG 239991 29 100.0 32 ............................. TCAACAAGGAGAAATCATGAGACATGACGAAC 240052 29 100.0 32 ............................. TGGTCGGTGACGGGGCATTCGACGAGCGGCGT 240113 29 100.0 32 ............................. TCCTTGACGTGGCGCAACGTGGTGGCGCTCAG 240174 29 100.0 32 ............................. GCGCTCGCCTCCGTCAAAGGCACGGCCTTCGG 240235 29 100.0 32 ............................. CTGTGGATGTCGGCGTTGGAGTCGCCGAGAAT 240296 29 100.0 32 ............................. GGATTCACCCTCAGATGCGACGCGACACTGAA 240357 29 96.6 32 ............................A CTGTGGCACGACGGGCTGAAAGGCAACGTATG 240418 29 100.0 32 ............................. CCTGGAACGTGTCCCACGAGCCCAGCCAGCCG 240479 29 100.0 32 ............................. CCAGTTGGGTGTGGCCCGGACGGGTCAGCATG 240540 29 100.0 32 ............................. GTGGATGTCCGCGGAAACGTCCCTAATTTGGT 240601 29 100.0 32 ............................. CATGGTTCGCCATTCTCGTCGGTCAGTGTGCG 240662 28 96.6 32 ....................-........ AAGGATACGCTGCCCATGATCGTCGGCACGAA 240722 29 100.0 153 ............................. CGAGGCATGAAAAACCGGAAGCAAGCCCGCGCGAATCGGCTGTTATCTCAAGTCTGCACGGGGACTTCCGGCAATGCAAAATCATACCCCACAACCGAGAAAAGCAAGGCAACATGGCTGGATACCGAAGCAGACCAACGGAGCCGCCTGTAA 240904 29 86.2 0 ................T.........TTT | ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 61 29 99.1 34 GTGTTCCCCGCATACGCGGGGATGATCCC # Left flank : GGGATCATGTCGGACTGTGGGATGAACGGCTGGGAGAAGTATCTGCAGGAAAATCCTATGCCGATGATGAGTGGGGATATGAGGAATGGTAGTTATTGTATTAACGGCATGCCCGGTGGGTTTACGCGGTGACCTTACTCGATGGCTATTGGAAATATCGCCAGGCGTGTTTGTGGGGCATTTGGATGCACGTGTTCGTGAAAAACTGTGGGAGCGAATCGTTGAACTCTCAAAGAACGGTCGTGCCATTATGGTTTATTCGGCTCGAAATGAGCAGCATCTTGCTTTTAAAGTGCATGGAGCTGAGTGGTCTCCGACAGACTGTGAAGGCTTGGAGCTTGTAAAACGTCCTTCTGGTCCAAAGGAAGTGTCGTTTGGTAGTGCTCTTCACCGTGGATGGAGTAATGCCAGTAAGTATCGGCAGGCGAAGAAGTATTCAAACTAAATGAAAAACGAATGACATGAATTTAGAAACCACGAAATTGCTATAATCTCTTAGT # Right flank : TAATTAAAACTTCGACCTGCATATAGCTTTCTGTCGAGCATAATGAGGGGCGCGCTTGCGATTACCGGTTGTATCTCGCTTCGGTGATCCGGATTCCTGGTGTTCGGAGCGTTGATGACGAGTCCACGGTTGGATGCAGAAAGCATAAGCGGATGGCGGTCGATGAAATGCCGGACGACAAGAAAACCTACGACATTAATTCGTGCGCGGTCAGCATGCCGACGGCGCACGACGGGAGGGGTCTGTCCTGGAGTCAAAGATCGAGCCAGTTCCCCAGCTCTTGACTGGCGATTATGTCTATTGGATAGTGTACCTCGCTTATATATGGCAGGTGTTCGTGCGAAAAGTGTCAAAAACATGCCCCCTAAGTGGCTTTTCTCGAAGGGCATGTGCCATATATAAGCGAGAAACTTCAGGTCAAGATGCCAAATCTGCCATATATAAGCCAGATATCGCGGTTCAGTTCAGATGAACTGGGTGTATGTCCATAAATTTCGACG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //