Array 1 99-800 **** Predicted by CRISPRDetect 2.4 *** >NZ_QATD01000084.1 Salmonella enterica subsp. enterica serovar Saintpaul strain sg_wd21 wd21_84, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 99 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 161 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 222 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 283 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 344 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 405 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 466 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 527 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCCTCCTGC 588 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 649 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 710 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 771 29 96.6 0 ............T................ | A [798] ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGTG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1532-162 **** Predicted by CRISPRDetect 2.4 *** >NZ_QATD01000011.1 Salmonella enterica subsp. enterica serovar Saintpaul strain sg_wd21 wd21_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1531 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 1470 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 1409 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 1348 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 1287 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 1226 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 1165 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 1104 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 1043 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 982 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 921 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 860 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 799 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 738 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 677 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 616 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 555 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 494 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 433 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 372 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 311 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 250 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 189 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //