Array 1 50-217 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOL010000026.1 Bartonella sp. B10834H15 NODE_51_length_266_cov_166.127072, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 50 36 100.0 30 .................................... GAGCAATGGTGGCAATGGTTCGCGTCATTT 116 36 100.0 30 .................................... CCGCCAATATGTTAAGGCTTTCGACATGAC 182 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : TTTTCTAATCTGTTACAACCGGATCGTCGTCATTGCCGCGCGGACTTTTG # Right flank : TCTTTTTCACCGGACTGGATATCGCCGCCTGTTGCGGCTTGACCGCATT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 315494-314596 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOL010000003.1 Bartonella sp. B10834H15 NODE_3_length_517085_cov_194.886458, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 315493 36 94.4 30 A.G................................. CGGCTTCCAATGGATTGTTTTGGCGCATGT C,C [315486,315488] 315425 36 100.0 30 .................................... ATGGAATGCCATTGATGCCCCTGCCTTTAG 315359 36 100.0 31 .................................... GTGCTCAACAGTCTGAGACGCGCCTGATCTA 315292 36 100.0 30 .................................... AAACAAAGGAATAACGATGATGTCTCGCGT 315226 36 100.0 30 .................................... AATTTTGCTTAACTGCACCGCTGCAAAACC 315160 36 100.0 30 .................................... GAAGCGGTTGATTATTGCGAGAAGCTTAAC 315094 36 100.0 30 .................................... CTGTCATGACTATTCGTGCGTCACCCCATG 315028 36 100.0 31 .................................... TTGGTGGATTATACCTAACCTTCTTGTATGA 314961 36 100.0 30 .................................... CTGTAGGTCTCGTCACTATCACTGCTTCTG 314895 36 100.0 30 .................................... CAAAAGCTGAATTGATTACTGAATATTCTA 314829 36 100.0 30 .................................... TGAACCGGTAACGGCGAACAAGCTTGATAG 314763 36 100.0 30 .................................... GGGAGTAATAAAACCCCCCCTGTCGGGCGA 314697 36 100.0 30 .................................... AAACGCATGGTTGATTTCAAGTATCCTGTA 314631 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 14 36 99.6 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : CACAAATGTAGACACACTACGCCTTTGGCCGATTTATGCAGAAGTTTTCTTCACTTGTCAATCGACCAGCTTTAAAAAACCGGAAAGCTTTTTGTGAATTAACCGGCAATCATGGCGAAAAACCGGATGCATTTGACAACAAACCATTTTTTGTCGGGCAAACAGCAAAAGAGCCGGAAAACTCTGATGCTTTTAAAAAAACGCGCCCGTGGCCTCGCGCAAAATGAACAAAACAGATTTGAAAGGGTGAACGGAATTTTCCAAAAATTAAAAAAAGGGGCTTGTGTCAAAGCCAATTGCCAGCTATTTAGCCGCTAACGCGCTCGGATATTTGTTTATCAAATAAAGTTCGCCTTTATGGAGAGGTGGCTGAGTGGTTGAAAGCACCGCACTCGAAATGCGGCATAGGGGCAACTCTATCGGGGGTTCAAATCCCTCCCTCTCCGCCATGATTTTCCTTTTCTTTTGAAACGACTTCTTTAGTTATGCACCCGTTCGGA # Right flank : CGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGACATTTTTTTTAAAAAAAATGCTGTTTTTCATTAAAATAACACCAGTTGGGCGGGATTTTTTTGACGTTTCCTACGTGCTTGATCGGAAAATCTTACGATATTTTCATATTGCTTGTCGGTAAATTGGAAAATATAGATGTTCCCTCGTTCAGGCAAGGAGGATTCGATCTTCCTGACATAAGATTCGAATTGTTCTTTTCCGTTACAGAAACGCAGATAATTCGAGAACTGGCTCATCTCGAAGCCAATATCCAACAAAAATTGTCTGAATTTCGTTGCGTCGTGGCGCTGTTTTCTTGTCTCTACCGGTAAGTCGAAAGTAACTAATATCCACATTAATCGATACCCGCTTAAATGTTTAGGACCCGATGTTGCACGCTCAAGATAGGCTGTCATAATTGTCATTTTCTCCCCATGCGTCATCAATTTGGACCGGATCGTTTTGCAAAGAAAAAATTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 2 319434-318287 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOL010000003.1 Bartonella sp. B10834H15 NODE_3_length_517085_cov_194.886458, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 319433 36 94.4 19 CC.................................. TATCAATATTTGCGATTTT Deletion [319379] 319378 36 100.0 29 .................................... TTAGTGCGGGTTCATAATCGCGCAAGTTA 319313 36 100.0 30 .................................... CATCAATGCGGCAATACCAATTGCCAAGGC 319247 36 100.0 31 .................................... TAGTACTGCCAACTATTCCCCTACCCTTACA 319180 36 100.0 30 .................................... TTGACGCGATTTTAACAATCGGCAACGAAA 319114 36 100.0 30 .................................... GTTGCGAAAATTACTTCGAGTACTAGGAAT 319048 36 100.0 29 .................................... AAAATATATGCTGCCCACGCGAATGACCC 318983 36 100.0 30 .................................... GGCGGTTATCATGATACCGGCTGCAATTGT 318917 36 100.0 30 .................................... CAAGCGGCTATTATACATTTATCGCAACTA 318851 36 100.0 30 .................................... GATGGGTGCGTCGTGCAAACAAAACGTGGT 318785 36 100.0 30 .................................... CGAGCTAATAGAATTAAGGCTAGCTAGTCG 318719 36 100.0 30 .................................... TAACCTGTATAGTTACGTTACGTCTTGATT 318653 36 100.0 30 .................................... CGAAAATTTCGAACGTCGCTTCATGCGTGA 318587 36 100.0 30 .................................... GTTCCAAAGAAACATCGTTAATTTCGATAC 318521 36 100.0 30 .................................... TGACGAAGCTGAAACCATCTTGACGCCGGT 318455 36 100.0 31 .................................... GTATCTATACCAGATAGCCGATGGGCCGCGT 318388 36 100.0 30 .................................... TTCACCAAAAAACAAGCGAATGGCTGAGGT 318322 36 97.2 0 ..................C................. | ========== ====== ====== ====== ==================================== =============================== ================== 18 36 99.5 29 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : TCACATCCATTTTGTTCCTCCCCTTGCAATGCAACACCGGTTGAACATTTACACACACTAGCGTCGCTGCTTGCCCCCATTTGCTAATCTAATATAATTTAACCATCATAGTAATATTGACTTTAAATCGGGGTAACCAATGAAAAACTTGTCGCATCTCTTATAACAATTTCTCGTATAACAACATAATCCGTTATAATTACCGGTTTTGGAAAGTCAGAAAAACAAAAGCAAGAAGAAGCCGCAAAAGCGTTTTTATCGGTTAAACTCCGCAATGCCCCAAACAAGAGCTACTGAATATGTTACTGTTTCGTTTTCTTGATCCATTATTCTTAATCTTAAACATGTTCGCTGTGTTTATGTGGGGATTATATTTGCTTAATCCGTTTTTTGCATTTGTTCCATTTCACGTTGATACAGCACCGATTGCCCTTACTTTTTGGTTAATTGTCTATATCGCCGTTAAACGCTACTTCCGTCGCAAGCGTTGGATGAAATAA # Right flank : CGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTGTAAAAAAATACTGTTTTTCATTAAAATAACACCAATAAATTTCGATTTTTTTTGGCGTGTCTTCCACGTTTTGTCTGAAAATCTAACAATATTTTCACATAAGCACACGATCAATTTGCTTGTCCCGTAAGGCAAAAAAAATATCGAACTTTCATCGTTCGGGCAAGGTAGAAGTGGGCTTACCAATACAGGATAAGCCGACATGTTCGGGCTTGTTTTTACAAAGACCTCAAGCAATTTAGTGAACCGCTGTTTCGACTTTTTTAAGAAAGCTTTCCGTTGTTAAAATGCTGGTGAATGCGCCGTGCTACCTAACAAGCAGCCCGCTTTGATAAAGTGGGCTTAAGACAGCATGATAAACCTTAAGACAGCGAGTTAAACCGGTTTGTCGCATCCGGTTTGCTTTTGTCAATTTTTATGCGTGGCTAAAACTGAACGAGCCTGCACCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 3 322300-321275 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOL010000003.1 Bartonella sp. B10834H15 NODE_3_length_517085_cov_194.886458, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 322299 36 100.0 30 .................................... TCTTTTTCACCGGACTGGATATCGCCGCCT 322233 36 100.0 30 .................................... CATAAATAAATGTGTCATAAGCGTCGTTTT 322167 36 100.0 30 .................................... AAAAAAGCCCGATGCCGCTTTTGCTGTTCT 322101 36 100.0 30 .................................... TCCACCCCCAACGCCCTGTATCGTCAAAAC 322035 36 100.0 30 .................................... TCGTCGTAGTAGATAATGACGATATTCTGC 321969 36 97.2 30 ...................................T AAATCAGCCGGGTATCGCTTATACCATGGG 321903 36 100.0 30 .................................... CGGATCGTCGTCATTGCCGCGCGGACTTTT 321837 36 100.0 30 .................................... TCTTTTTCACCGGACTGGATATCGCCGCCT 321771 36 100.0 30 .................................... TATCAGAAAGCTTGTAAAAACCCCATTTTA 321705 36 100.0 30 .................................... CATAAATAAATGTGTCATAAGCGTCGTTTT 321639 36 100.0 30 .................................... AAAAAAGCCCGATGCCGCTTTTGCTGTTCT 321573 36 100.0 30 .................................... TCCACCCCCAACGCCCTGTATCGTCAAAAC 321507 36 100.0 30 .................................... TGTATTGTTTTGTTATATCTGTTGAAAACA 321441 36 97.2 30 ....T............................... TCGTGCTTTGATATTGACGTTTGACGTTAT 321375 36 100.0 29 .................................... AGTATCAATCCGCCCTCGATAGATTGTAT 321310 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.7 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : CCAGCTCCTTTCACAACAATATATTGAAACTTGAAGATTTTCATACGGGCTTTTTCGTCGTCGGCTTCATCTCGGCACTTGCTTTCTTCATCTTCCGCACATTGCCCCGCGATGCGGGCCATGCTTTGAACGAAAAGAGCAAACAATCCACGGCACAACACTGATGAAACCAAAACATATTCTACAGCCGCTTGACCGCATTTTCTAATCTGTTACAACAACAGGCAAAAAGCCCAAGCAGATAAGTCTGTTGCGGCTTGACCGCATTTTCTAATCTGTTACAACTAATCCGCCCGTAAATGGCGTATTCTGCGGGTTGCGGCTTGACCGCATTTTCTAATCTGTTACAATAAATCAGCCGGGTATCGCTTATACCATGGGGTTGCGGCTTGACCGCATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT # Right flank : CGATGTCCACTTAACCCTTTGTTTTATAAGGCTTAAGTGGATATTTTTTTGTAAAAAAATGCTGTTTTGCATTAAAATAACACCGGTAAATTTCGATTTTTTTGACGTATCTTCCAAGCTTTTCCTGAAAATCTTGCAAGATTTTCACATTGCTTGCCAATTCAGAAAGGTGGTTAGTCTCTCACTAATTGAAACACCTCCTGTAATTGGCATTTAGTAACAATGAGCAACCTATAATCAGTCCTTATCGTCTCTGCTGTTCCGGAAGTCACTCGCATACCCCATAAAATCGGGAGATTGATAATGATGAGCGAGCATCAAGGCAAAAAACGGATAACCGACATTCGATACAGAAGAAACCTGCCGCAAGCCATGACAATTTACAACGTATAAAACAAACAAATCCCGATAAAAATCAGCAAAAGAAGTATATCACAGAAAGGAAAGTAACACGCCGGGGAGCCGGAAATGCAATCCCCACATCGCTAAAAGCCATGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 4 322617-322449 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOL010000003.1 Bartonella sp. B10834H15 NODE_3_length_517085_cov_194.886458, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 322616 36 88.9 30 ACA..C.............................. AACAGGCAAAAAGCCCAAGCAGATAAGTCT 322550 36 100.0 30 .................................... TAATCCGCCCGTAAATGGCGTATTCTGCGG 322484 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 95.4 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : GCTCGGCATGAAGTTCGGCGCAAAAGAAGTTTATGCCCATTTCGGATTTCGGAAGGTGCTGATGGCAGGCTCTATCGTCTCGGCAATGTTTACCGCGTCCAATGGCCTGTTTTACCCCACCACACCCTATTTGTTGATGATTATCGTGCTCTTGTTCGGCGGCTTTTTGCGCTCGCTTTTCTTCTCCGGTGTCAATGCGCTTGCCTTTTCCGATATTGCCAAAGAAGACATTAGTCAGGCAACGCCGATTGCCGCCGTTGCCCAACAGGCTTCAATGGCACTCGGCATTGCAATTGCCGGCGCGGTTCTGGAAATTGCCAGCTCCTTTCACAACAATATATTGAAACTTGAAGATTTTCATACGGGCTTTTTCGTCGTCGGCTTCATCTCGGCACTTGCTTTCTTCATCTTCCGCACATTGCCCCGCGATGCGGGCCATGCTTTGAACGAAAAGAGCAAACAATCCACGGCACAACACTGATGAAACCAAAACATATTCT # Right flank : AAATCAGCCGGGTATCGCTTATACCATGGGGTTGCGGCTTGACCGCATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTGCGGCTTGACCGCATTTTCTAATCTGTTACAACTCTTTTTCACCGGACTGGATATCGCCGCCTGTTGCGGCTTGACCGCATTTTCTAATCTGTTACAACCATAAATAAATGTGTCATAAGCGTCGTTTTGTTGCGGCTTGACCGCATTTTCTAATCTGTTACAACAAAAAAGCCCGATGCCGCTTTTGCTGTTCTGTTGCGGCTTGACCGCATTTTCTAATCTGTTACAACTCCACCCCCAACGCCCTGTATCGTCAAAACGTTGCGGCTTGACCGCATTTTCTAATCTGTTACAACTCGTCGTAGTAGATAATGACGATATTCTGCGTTGCGGCTTGACCGCATTTT # Questionable array : NO Score: 3.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //