Array 1 95614-94671 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMBN01000004.1 Escherichia coli strain MOD1-EC6169 MOD1-EC6169_4_length_209975_cov_19.5799, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95613 29 100.0 32 ............................. CAACAAAACGCTGGAAGCCGGAACAGATATCT 95552 29 100.0 32 ............................. CTTATTGAGTTGGCACAGGAATTACATGAGGA 95491 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 95430 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 95369 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 95308 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 95247 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 95186 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 95125 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 95064 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 95003 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 94943 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 94882 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 94821 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 94760 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 94699 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 122562-121313 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMBN01000004.1 Escherichia coli strain MOD1-EC6169 MOD1-EC6169_4_length_209975_cov_19.5799, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 122561 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 122500 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 122439 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 122378 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 122317 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 122256 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 122195 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 122134 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 122073 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 122012 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 121951 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 121890 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 121829 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 121768 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 121707 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 121646 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 121585 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 121524 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 121463 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 121402 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 121341 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //