Array 1 51-1362 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWRJ01000024.1 Salmonella enterica subsp. enterica serovar Tennessee strain MOD1_SALC_73 contig0023, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 51 29 100.0 32 ............................. TTGAAGAGTCCCGCGTTTACAATTCTTTCTGT 112 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 173 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 234 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 295 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 356 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 417 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 478 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 539 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 600 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 661 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 722 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 783 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 844 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 905 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 966 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 1027 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 1088 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 1149 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 1210 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 1272 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 1333 29 96.6 0 ............T................ | A [1360] ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCCAGCTGGGCTAAGCCGACCTTGGGGCGGTCGTGTTGCGGCGGACCGGTG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11770-10400 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWRJ01000033.1 Salmonella enterica subsp. enterica serovar Tennessee strain MOD1_SALC_73 contig0033, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11769 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 11708 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 11647 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 11586 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 11525 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 11464 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 11403 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 11342 29 100.0 32 ............................. GGCCACTTATCAGCAAACCGGGCATCCAGAAC 11281 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 11220 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 11159 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 11098 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 11037 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 10976 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 10915 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 10854 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 10793 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 10732 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 10671 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 10610 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 10549 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 10488 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 10427 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6198-7629 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWRJ01000041.1 Salmonella enterica subsp. enterica serovar Tennessee strain MOD1_SALC_73 contig0041, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6198 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 6259 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 6320 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 6381 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 6442 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 6503 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 6564 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 6625 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 6686 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 6747 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 6808 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 6869 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 6930 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 6991 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 7052 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 7113 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 7174 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 7235 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 7296 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 7357 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 7418 29 100.0 32 ............................. GTTTTCCGTATCTTCGATCCTACCGGAACGGT 7479 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 7540 29 93.1 32 .G...................G....... CCACGACCAACCGGTACTAATCCTGAGTTCAT 7601 29 96.6 0 ..............C.............. | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : | # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //