Array 1 37084-31826 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQKS01000003.1 Haemophilus haemolyticus strain M26174 M26174_HUY4190A162_cleaned_ctg_5434, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 37083 33 100.0 35 ................................. AATGATAAGGATTTTTCGGAAGCATTGTTAGATAC 37015 33 100.0 33 ................................. AATCAGGCAATTTTACAGGAAGTGCGGAAGGCG 36949 33 97.0 33 ................................T TCTGTGCTATTTTCTTGTGGAGTCTGTGTGGAA 36883 33 97.0 33 ................................C TCAACAATCCGCACAACAAAAACAAGCAGAAGC 36817 33 97.0 34 ................................G TAGTAGGGATGATTTTGATCTCGATATTCGGGGG 36750 33 97.0 33 ................................T ATATCGCTATAAGGGGATTTTTCAATAATAAGA 36684 33 100.0 36 ................................. CGGTCTAATGTTACGGTTTTGCCATTGACTGCTAAA 36615 33 100.0 33 ................................. TATCAATACCAAATAACCAGCCGTTTAGGTATT 36549 33 97.0 34 ................................C TGTCTAGTGCATAGATATGGTGGATCTAATACAA 36482 33 100.0 34 ................................. AAAATAACTACGTCGATAAGCGGACAGCATGACT 36415 33 97.0 33 ................................C CTGCCATTGTCTGTGATGTATCTTTTTGCGGTG 36349 33 97.0 32 ................................C ATATTTTGAAGTTTTAATTTTATTAAATTGTA 36284 33 100.0 34 ................................. GTCAACCAAACATTACAAGTAAATCTTGGCTCTT 36217 33 97.0 34 ................................G CCACTTGGCGAGAAGATGCTTCGAGCAGGTAAAA 36150 33 100.0 33 ................................. TTTTTAAAATGCTTGATCTTTTGATTTTTGAGG 36084 33 100.0 33 ................................. CTTGTCAAAAATGATATTAAAACAGAATAAAAT 36018 33 100.0 34 ................................. AAATCAAATTCGCGTGGACTTAGACGGTCGGACG 35951 33 97.0 32 ................................C AGCTTACTTCGCAACATTAGATGTTCAATTCG 35886 33 97.0 33 ................................T GATGCATTCTGCTTTACAATCCTTCGTCATACG 35820 33 100.0 34 ................................. ATTTTATTGAGCCAGGAGGATTGTGTGGCTATTC 35753 33 100.0 30 ................................. TACATCATGACATCATCATCTTTACAGAAG 35690 33 97.0 32 ................................T GCTTACCAAGTTATTAATGATATTTGCTCAAT 35625 33 100.0 33 ................................. GCTTGACGGCGATAAAACACAATACGATGCCAT 35559 33 97.0 32 ................................T TGCAATATTTCAAGAATTTTGCAAAATTTGAC 35494 33 97.0 33 ................................T CAAAAAATCAAGACGTGAACGCAATTTGTAACT 35428 33 97.0 32 ................................T GATTGAAAAAGAATAAAAAAATTGAACAAAAG 35363 33 97.0 32 ................................T TACACGATAGCAAAGAGAAAGAGTATGCAGAA 35298 33 100.0 32 ................................. TTTAATTTTTTAATTTTTTCTGCGCGAATGGT 35233 33 97.0 34 ................................T GATATGCCTCCATCAAGTTATCCATTTGCTTGAC 35166 33 100.0 34 ................................. TGGGTATTGTAAAGGAAATTATTTATGTTTGGAG 35099 33 100.0 32 ................................. GTATCACTATAAAATCTGGACAACCTAAGAAA 35034 33 97.0 34 ................................T TATCAAATGACCGCTCTTTTTGTTCGGAAAATGA 34967 33 97.0 33 ................................C GATGCCATAGCCAGCTAAGGTTGTGGCTGGGGA 34901 33 97.0 33 ................................T TCGTCAATCTTTTGTTTTTTTGCGTAGCATTAC 34835 33 97.0 33 ................................C GAGTACGAGTGTCATAGTTGCTTGGTACCTTTA 34769 33 97.0 34 ................................T TTTGACAACTACATACCGCCTGTTGATATAGGGG 34702 33 100.0 33 ................................. CTTTTACTGGACCAAACATTCCGCCTGCGCGGT 34636 33 100.0 33 ................................. AGAACAGATATATTAAAAGATATATTAAAACCG 34570 33 100.0 32 ................................. GATATTCAGAAAGGCGGTGATCGCGTTTTAGC 34505 33 100.0 34 ................................. TAATTTGTTTCCTTTTTCTGCCCCTGCCGAATGG 34438 33 100.0 34 ................................. AAGAAGTCGCATTGCAGGCTGAATTACATAAATT 34371 33 97.0 33 ................................C GTCCAAAATATGCCGTCGAGTTGCAACTACTGG 34305 33 97.0 33 ................................T GGACAAATGAGCACATTACGACTTATCTATCAC 34239 33 100.0 33 ................................. GGCAAATCAATCTGCTTACATCGAACGCCTCCA 34173 33 97.0 34 ................................G TTGTAACAGAATTAGGGGATTTACGCCAAACAGG 34106 33 97.0 33 ................................C AGATGAGCAAATTATCCTTGAGTTGAATAATAC 34040 33 100.0 33 ................................. AAAGAAGTGTTAGGAATTTCCCCTGCTGCAAAT 33974 33 100.0 34 ................................. TTGTGCTTGCTATATCAGTAGTAATAATTTATTT 33907 33 100.0 33 ................................. ATTCAGTTTACATTTGTTAGCTGAATAATTATG 33841 33 97.0 33 ................................G CGAAACCGATCAGAAGATTACAGATAAATCCTT 33775 33 100.0 33 ................................. CTCCAAGTGCGGTTAATTTCGGCTTGTTTTTGC 33709 33 97.0 34 ................................G CTTAGAGTGTTGTCGTGCCAGTCGGTGGGTTCAT 33642 33 100.0 33 ................................. TCTACGCGCGACACTATCTCATTAATCCCTAAG 33576 33 97.0 33 ................................T ACAAATTGTCTTTTAGTTCATGGGTGTAATTGT 33510 33 100.0 33 ................................. GGTTATCAAATTACAATAAATTATCTCAAGAAG 33444 33 100.0 33 ................................. CGGAAATGTCTTTATCCATCGCCCAGTCAAAGG 33378 33 97.0 33 ................................T AAATAATTTAGCAAAGATTGTATTTTTATCCAT 33312 33 97.0 35 ................................C AGAATCAAGAAGAGATATGGGGCAAGCAATGAAGA 33244 33 97.0 33 ................................C CTCACGATAAACAGAGTTTAAATCGACTTTGTT 33178 33 97.0 34 ................................T TCTAAGAGTCTTTGTCCGAATAATAGGCCTGTAT 33111 33 97.0 32 ................................G CCTTTTTGAGTTAAACTTGCCGTCTTTCGGTT 33046 33 97.0 36 ................................T TTAAGGTACCATTAGAGATAATTGCCGACGAGGTCA 32977 33 97.0 33 ................................C AACCAAAACGCTTTGTGATTAGTGGTAAATCAC 32911 33 97.0 36 ................................T GACGGTATCAAAGAAACATATTTCTATTTATTAGAA 32842 33 100.0 33 ................................. AGCAACGATAGAAAGCAGAACAAAATAAACGTT 32776 33 97.0 32 ................................T TAAAACGTGACAAAATACAATTAACAGACGGC 32711 33 81.8 32 A.....G...C..C.C................C ACTTATCTTTGCCAACTTCTTTTTTAATAGCT 32646 33 84.8 31 T.....G...C..C.C................. GGGATTAAATCGGGAACACCATTGGCAAGGG 32582 33 81.8 33 T.....G...C..C.C................T TACCAAAGGCAAATATTCGCACTGCGAGATTGC 32516 33 84.8 32 C.....G...C..C.C................. CCACCGCTTCACATTGCGACACAATCAAATCA 32451 33 81.8 34 T.....G...C..C.C................T GACGCTCTAATATGGATTAACTCTCCATCATTAT 32384 33 84.8 33 ......G...C..C.C................G TTTGCGGTTGGTACCACTCTTGATGCGTCAAAA 32318 33 84.8 32 ......G...C..C.C................T GAGGTGCTAAAATATCCTGATGGGACGATGAT 32253 33 84.8 33 ......G...C..C.C................T TTTAAGGTAAACGTATGAATCATTTAGAGCTAA 32187 33 84.8 32 ......G...C..C.C................T CGCATTACGCTAACTATAAGTGAAGCTCGTCA 32122 33 84.8 33 ......G...C..C.C................T ATCAAATGAGCGCTCTTTTTGTTCGGAAAATGA 32056 33 87.9 34 ......G...C..C.C................. AATAATAATGGCTATCGTTATTCTCAAAAATTAG 31989 33 87.9 33 ......G...C..C.C................. TCGTTATTTAGTGGGGTATTGCGATCCCATAAG 31923 33 84.8 32 ......G...C..C.C................T TTTACGCTCAAAAAAATAAAAATCCATAAAAT 31858 33 84.8 0 ......G......A.C....A...........G | ========== ====== ====== ====== ================================= ==================================== ================== 80 33 95.9 33 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Left flank : TTGATGAGATAAACTATGTTAATGTTGATTACTTACGACATTTCTTTTGATGATCCAAATGGGCAAGCGCGATTGCGCCGTATCGCAAAACATTGCTTAGATTACGGCGTTCGGGCGCAATATTCGGTATTTGAATGCGATGTCACGCCTGACCAATGGGTCGCGTTGAAAAACAAACTGTTGGAAACCTACGATCCCACATGTGACAGCCTGCGCTTTTACCATTTAGGCAGTAAGTGGCGTAATAAAGTGGAGCATCATGGGGCAAAACCAGCAGTGGATGTATTTAAAGACGTGCTTGTTATTTAGTTCGCTAACCTATTGTTCTCATTAAAATCCTAATAGGATAGCGATCTTCGTTTTCTTTAACAATTTGGATGACTTAATCTATTTGTATAACGGCAATACGGCCGTTATACTGACTAAACTCCTTATCATAAAATCAGTTAGCGAAATACGGTATTTAATTTGCTGATTTTTCTTGCTTTTTTATGTAGGGA # Right flank : TTCACGCATTAAGCCAAAGGTAACCCTTACAACGCAGCTGTTTCAGCCAGCGTGTGTTAAAACAGCTCTGTTTTTTATTATTTAAATGTTATTTTTTTGTTAAATATATTTTACTTGAGTATAATGCTCAGCATTATTCCTCACGGAAGAGAATCCGTAGAATAATGAGATTAATCGTAAATATAAGGAACAAAAATGGATTTCAATCGAATTATCACTCACATGAATGATCATCATCAAGATGATATGGCTGCTCTTTGTAAAAAATTTGGTGGCGAAAAGGAAATCACGGATGTGACATTAGTTAATGTAGATTTTGGTGGTTTAGATTTTAAATATAATGGTGGAAAAACATTGCGCGTGGAATTTCCACAACAAGCTGACGCAGGTTCAATTAAACAAGCGATCATCAATCTTTGTGTAGAAAATAAACCAGTTGCAAATTACGATCGTATCAAAGCTAAAATTGATGAATTTCGTCAAGAGTTTAAAAGTTGTGT # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //