Array 1 941-1702 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABGUI010000012.1 Escherichia coli strain 4928STDY7071632, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 941 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 1002 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 1063 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 1124 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 1185 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 1246 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 1307 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 1368 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 1429 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 1491 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 1552 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 1613 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 1674 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 235165-236291 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABGUI010000007.1 Escherichia coli strain 4928STDY7071632, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 235165 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 235226 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 235287 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 235348 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 235409 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 235470 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 235531 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 235592 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 235653 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 235714 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 235775 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 235836 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 235897 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 235958 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 236019 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 236080 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 236141 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 236202 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 236263 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6534-6902 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABGUI010000068.1 Escherichia coli strain 4928STDY7071632, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6534 36 100.0 30 .................................... ACATCAAAAAGCAAAGAACTGGTTTTCTCA 6600 36 100.0 30 .................................... ATGGTGACCTTCACAATAGTAGGATCCCGA 6666 36 100.0 30 .................................... AACTAATTGAATGCTTAGAAGAATTGGAAG 6732 36 100.0 30 .................................... AATTTACGTGCTTTCGTGATGATTTCTTCT 6798 36 100.0 30 .................................... AATGCAAGTTCCTACACAGCGAAACTAACC 6864 36 83.3 0 ..............C..........A.GGA.....A | A,A,T [6889,6892,6900] ========== ====== ====== ====== ==================================== ============================== ================== 6 36 97.2 30 GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC # Left flank : AATCAATGATTGATAAATTAACGGCTACGATTAGTGAGCTAATCAATTATGAACTTTTAGAGCATGAGTTGGATTTAGAAAGTGATGAGATCACTGTAATGGAATTATTCAAGGCTCTGGGAATAAAGATCGAGACGAAGAGTGATACGATTCTTGAAAAACTGACTGAGGTTGTTCAAGTGTTTAAAAATCTTTCGAAGAAAAAGTTATTGGTATTCGTAAATACTTGTTCTTATCTAACTAGGGAAGAGTTAATCGAATTAAATAATTATATTTCGTTGTATGGGGTTGATGTTCTTTATTTAGAGCCAAGACAAGTCACTGGCTTTAAACAATATGTTTTGGATGAAGATTACTTTTTAGAAGTGATTGAATAATAATTTTATGGTTCTTTGATAATTGAATAAAAGTGCATAATATGAAGCATTCAAAGCTGAACCCTTGCTATGGATGAGTAGCGCGATTACGAAACTTTTTAGAAAAAAGAAATTGTCTACGAG # Right flank : AAGAACGCTGCCTACTTCTCTTTTAAAGAAAAGCAGGAAGCGTTTTTTAATCTAATACTTCACCATTATCGCCAATGGAATCGTCTGAAGTTTCCCCTT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //