Array 1 51627-53164 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBEO01000004.1 Ligilactobacillus salivarius strain CCuG47826 CCuG47826_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================ ================== 51627 36 100.0 30 .................................... GGGTTATTTGTTTTAATATTAAAGAAATGA 51693 36 100.0 30 .................................... GGGGCTTTCGTTCAAATTTTCTAGGCTAGA 51759 36 100.0 30 .................................... TTGGAACAGGTGAGAGGGTCGTAAGTTCGA 51825 36 100.0 31 .................................... AAATTTTTAGAACTTAAAGCATTTTTATTGA 51892 36 100.0 30 .................................... ATCAAAACTTAGGAGGAATTCCATTGCCTA 51958 36 100.0 30 .................................... AAGCGGCTAGCATGCCCCGATCAGTATGCC 52024 36 100.0 30 .................................... CAACAGTGGTGTTTTGAAATACAGCCGCTT 52090 36 100.0 30 .................................... AACTAAAACCAATCTGTTGCTCAAACTCAC 52156 36 100.0 30 .................................... GATAATAGCGAAAAGTTTACCTTTGTTTAT 52222 36 100.0 30 .................................... TAAAACAGTTAACAAATACGTTATCTGATT 52288 36 100.0 30 .................................... TCATGCCAGAGGGCTTAGCAGCGTTCCGGA 52354 36 100.0 30 .................................... ACGTTTAGTTTCTGGAAATGTGACTACTAT 52420 36 100.0 30 .................................... TTAAATTACGCTCTGCTACATAACCAGATT 52486 36 100.0 30 .................................... ATTTTCTAAGCCCTCTTTACTTTCATCGCT 52552 36 100.0 30 .................................... CTGCCAAGTTGAGATTTAATTTGTTTGCTA 52618 36 100.0 30 .................................... ATTCAGAAGGTGCTGTTTACCAAGATTTCG 52684 36 100.0 30 .................................... CAGAAGCGTTACACGTTGGATCAAACATTT 52750 36 100.0 30 .................................... GAGTAAACTATTTTACACAAGAAGATTACT 52816 36 100.0 30 .................................... AAAAATTTAAAGAAATGTCACTAGAAGAAC 52882 36 100.0 30 .................................... ACTAAACGTGATAGATTCGCCTTCTTGAGA 52948 36 97.2 29 ..................................A. GGTTCTGAGCCTAGTTAGAATGAATAGGT 53013 36 83.3 80 ..........A..A......T......A....T.T. TTGACTTTGTCTCCACAGTTATATATTCTAATTTCAGAATATATTAATTGACTATTTTAGAGTGGTTAGTTTAGGTATTA 53129 36 80.6 0 ..........A.........T...AG...CG..G.. | ========== ====== ====== ====== ==================================== ================================================================================ ================== 23 36 98.3 32 GTTTCAGAAGTATGTTAAATCAATTAGGTTAAGACC # Left flank : AACAGACCGAATTAGTAAAAAGTATATGAATGTATTGATCAAAAAGATTATTGAAGACATCACGGATGATGAAAGACAAGCAATACTAAAATCAGTAAATGGTTTGTATGATCGTATTCGAGAGGTTTTGTATAAAATTGATATACCCTTACAAGTAGATTATGATAATGATTTAACAAGACTATTCAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCGTATGATAGAATATCTTCAGATGTTAAATTACATGTGGAACTAAACAGAGAAAGAATTATAGGTCTAACCAATGTCGCACATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTGAACCTTGTTAAGGTGACTAACGCATCAATGTTTATAATTGAATTCACAGAAAAGAATGGTCAGAGATTCTTTGAAAACTGTGATAATTACTATATTGATGAGGATTATATTGATTGGTACTAACGAATAGTTAAATTTTGATTATAAAGTAACT # Right flank : CTAAAATACAAAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTAAGATATATTATGGTTGATAATGTAATATTATATGATATATAATATAGTTGAAGATAAGAAATAAAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTACTAGATGGTTTAGTATTGGCGCTTTTAGATAAGCAAGATTATTATGGATACTCATTGACACAGGATATGCAAAGGGCAATTTCAATTTCAGAATCAACACTCTACCCAGTATTACGAAGGTTAAAGAATAATGGTTTATTAGAAACATATGATCAATCATATCAAGGGAGAAATCGTAGATATTATCGCATAACAAATAGTGGGGAAGAACATTTAGGAAGAGTTAAAAAAATGTGGAGCGACTACAAGGTTAGTTTAGATTCAATTTTCGAAAAAAACTAGGGAGGGGGAATAATAATGAAC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGTATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 273231-274363 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBEO01000008.1 Ligilactobacillus salivarius strain CCuG47826 CCuG47826_contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 273231 36 100.0 34 .................................... TAGTCTTTACTAGGTAACAGTCTTATCACGAACC 273301 36 100.0 36 .................................... CCTTACTTGATTTTTTGAATTCATCCAAAATACTTG 273373 36 100.0 37 .................................... AACAATGTAACGTGGTACAATTTGTGATACATCTTTC 273446 36 100.0 36 .................................... AATAATAATTTAGTTTTAAAAGAACCGTGTTCGACT 273518 36 100.0 36 .................................... GAAGATAATGGGAAAGATTGGTTTATTAAGTTAAGG 273590 36 100.0 36 .................................... TCCAGCTGCAGAAGATAATTCAAGAGAAATGAATTT 273662 36 100.0 38 .................................... CTTGTCTTGTCTGGTGTAATTGATTCCACGTACCAAGC 273736 36 100.0 35 .................................... TCTTACTCATTTCAATCGCTCCTTTTAGTTTTGCA 273807 36 100.0 35 .................................... TTTAGTGAATTCTATTTCCATTTTTTATTTCTCCT 273878 36 100.0 36 .................................... CCTTACTTGATTTTTTGAATTCATCCAAAATACTTG 273950 36 100.0 37 .................................... AACAATGTAACGTGGTACAATTTGTGATACATCTTTC 274023 36 100.0 37 .................................... ACGACAGCCTAATACCAGAGCTACTCCTTTCATTTAA 274096 36 100.0 42 .................................... TTCGTTCATTAGGTTTATCAATCTTTCATCAAATTTCATTTT 274174 36 97.2 41 ...............T.................... TTACCACCAGAAAAAGCAACTAAGATATTATCAAATTCATT 274251 36 97.2 40 .....................G.............. CCTGCTGTTGTTAGTTCGATCATTTTTCTTCATCCTTTCG 274327 35 88.9 0 ............................-....TCT | TT [274357] ========== ====== ====== ====== ==================================== ========================================== ================== 16 36 99.0 37 AGTAAGAACATATCTCCGAATATAGGAGACGAAAAC # Left flank : CAGGATTGAAATTACCGACTTTCATTGAGGAAGGAAGATAAGTATGATGCTATTAGTATGTTTTGATTTACCAAGAGACACGAAAGAGAATAGAAAAGAAGCAACTAAATATCATAAGAAATTAGTAGAATTAGGTTTCACAATGAAGCAATTTAGTGTGTATGAAAGAGAAGTAAGACAAAATTCTACTAGAGATAGAGTAATTAAAGTGTTAAAAGATAGATTACCTAAATCAGGTGCAATTACTTTATATTTACTTCCTAACGAAGTAAATGATTCACAAATAACGATTTTAGGAAGTGAGTCTATAAAGAAAACTGTTAGGAAACCTCAATTTATTGTGTTATAATACACTTACACTGCTGTAAGAAACAGTAGTACAAATAAAAACTTGTCTGAATTTTGACCAAATAATACTTATTAATTTAACCTATTGCCCGTTTAGGGTACCATTAAAAATGTCAATAATTGTTGATATATCAACTAATTGATCAAAGAGT # Right flank : TAATTAAAGTGATAAGAAGGAGAGTAAAAGTTAGAAAAAATAATATATAATATAGGTAATTAATTAGAAAGTGGTGTAATTATGACAACATTAATATCATGTATTGGTGATACAGATCCTATAAGAAATAGGCATGATGGAGCTTTATTGCATTTAGCAAGAGTATTTCGCCCTGAAAAAATATTATTAATATACTCTGAGCGTGCTTTATTGAAAGAGAATAATATCTTATTAGCGTTAAATTCTATAGAAGGATATAGTCCTGTAATAAAAAAAGATGAGAGACTTATTTCCGATAGTGAAGTATTTATTTTCGACAAAATATATGAAATATTAAATAATGTAGTCTTAAAGTATTCTAGAGATAATGAGGATTTAATTTTGAATTTATCTAGTGGAACTCCACAAATGAAGTCAGCTTTATTTACTATTAATAGATTGAATGATATTAATGTTAGAGCCTATCAAGTAATAACACCTAGTCATTCTTCAAATGAAGG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTAAGAACATATCTCCGAATATAGGAGACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //