Array 1 125013-126766 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZBU010000001.1 Streptococcus thermophilus strain ST11 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 125013 36 100.0 30 .................................... AAAGTAAACAAGTTTATCATCGCAGGTATG 125079 36 100.0 30 .................................... GAACCATTTTTGGATAAGTGCATTTCATTC 125145 36 100.0 30 .................................... AAAGTAGATAAAAAATCTGAATCGGTAATA 125211 36 100.0 30 .................................... ATGCCAGAGTATGTTATTCCAACCGATATT 125277 36 100.0 30 .................................... TGTATCGGTCTGTCAGCGATACGAGTGTCG 125343 36 100.0 30 .................................... GTCAAGGACGTGCCGTTCCAGTGGATGTCA 125409 36 100.0 31 .................................... CTATTTTGTGAAGAAGCTAGACGGCGTGGTC 125476 36 100.0 30 .................................... GTATATCACTGACGGACTCGCAAACGACTT 125542 36 100.0 31 .................................... ACTTGATATGACTGCGTTTCTAGAGGAACGA 125609 36 100.0 30 .................................... GTATGATAGATGAATAGACTTAAAGAGTTA 125675 36 100.0 30 .................................... CTTATGGTTATGCAAACGGTGGTCTAGTCC 125741 36 100.0 30 .................................... TATATTGATTGAGATGTGTTTATATCTTAC 125807 36 100.0 30 .................................... AAAATAGTATCGAAGATTTAAAACTCATTG 125873 36 100.0 29 .................................... GGTGTTTGATAAGTTGATTTTATCGACTG 125938 36 100.0 30 .................................... CTAAAAAGCGCAATGAAACTATCAATAAAT 126004 36 100.0 30 .................................... CCAAATTTGAAATTTGTAGTATACTAGAGT 126070 36 100.0 31 .................................... TTTGAGTCTTTGGTTATGGAAATTGTTGTCC 126137 36 100.0 30 .................................... GATGTCCTCTGTTCTCCAGTCGTAAATTGG 126203 36 100.0 30 .................................... TCTATATCATTCAAGTTAGTATTAGTAGTT 126269 36 100.0 30 .................................... GTCCACGTTTGGCACTAATGACAAGAACTT 126335 36 100.0 30 .................................... AACTGTATCCATTAATATAGTAGCATTTTT 126401 36 100.0 30 .................................... AGCACTTGATAGATACATTGATAGTCAGCT 126467 36 100.0 30 .................................... CTAGACAGTGGTATGTCTGACGCTTGGATT 126533 36 100.0 30 .................................... ATAGCTGGAGATAATTCAGAAGAGGGTTCT 126599 36 100.0 30 .................................... TAAGCCTTATACTGTATGTGAAATGTGTCA 126665 36 100.0 30 .................................... GGGCAATGATCGGTAAAGGTTTGGCTGATG 126731 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 27 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAACCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTCGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATCTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAATACTGGATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 19940-20406 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZBU010000019.1 Streptococcus thermophilus strain ST11 19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 19940 36 100.0 37 .................................... AAAGTTACATCGTTTTTTTCGTTTTTGAAGATTTTCC 20013 36 100.0 33 .................................... AGTTTAAAAAACTCGATACGATCTTTCTTTTTT 20082 36 97.2 36 ..C................................. ATTTTCCATGCTTTTGTCATAATTTCTTTTTTCATT 20154 36 100.0 37 .................................... CAAAGGTTGTTTATTGCTGTATTCGGTATTTTTTCTT 20227 36 100.0 37 .................................... CGTAAAATGGCATGTTCAATTTAAGTGAGTTATCATT 20300 36 100.0 35 .................................... TTTGTGCTGACGTGCCAACACTTTTAGCAAATTCT 20371 36 83.3 0 ..............................TTTTTT | ========== ====== ====== ====== ==================================== ===================================== ================== 7 36 97.2 36 GATATAGACCTAATTACCTCGAGAGGGGACGGAAAC # Left flank : GACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCGACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACCTCCTAACTGAGAAAGTGTCACTAACTGATATTGCAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : TGAAAATTTTGAAAACAGTATTGATACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGTTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGATGACCTCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGACAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATTAAACCTATTTTTCAATTATTTTTGAG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAGACCTAATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 23979-23151 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZBU010000007.1 Streptococcus thermophilus strain ST11 7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 23978 36 100.0 30 .................................... CAGCTAAATCTTTTTCAGCTTGAGCACGAT 23912 36 100.0 30 .................................... GCACTTATGGGCGACATCGTAATGATGTCG 23846 36 100.0 30 .................................... GCACTTATGGGCGACATCGTAATGATGTCG 23780 36 100.0 30 .................................... CTATGATGATTGATAAAATAATCAAGGCAC 23714 36 100.0 30 .................................... CTGAACTTAAAACTGACGTATCTAACATCG 23648 36 100.0 30 .................................... AACTATTTAGGTAATGTAGCTAGAGAAACA 23582 36 100.0 30 .................................... AGTCCAAAGGTATTTTCCTTTAACTAAAGT 23516 36 100.0 30 .................................... CACTAGGTTTTACAGCTTCTTCGACTGGTT 23450 36 100.0 30 .................................... GCTATAATGACTTGCTTAGTATGTTTAGTT 23384 36 100.0 30 .................................... AATCAGCAAATAACACTGACAACTATCCCA 23318 36 100.0 30 .................................... CCAAAGAATGGACCATCTTAATGAGAATAT 23252 36 100.0 30 .................................... TTGACAGAACTTTTGAAAGTATGGTTAGAA 23186 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTTGGTTGACATCTCCTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAGGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGATCTTGCCTAATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //